Best Alignments for T0344

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1z47A/T0344-1z47A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z47A/T0344-1z47A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8199e+003.90e-08
1fobA/T0344-1fobA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fobA/T0344-1fobA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8807e+004.24e-06 c.1.8.3
2b99A/T0344-2b99A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b99A/T0344-2b99A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0021e+004.44e-03
1l2tA/T0344-1l2tA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1l2tA/T0344-1l2tA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2125e+001.26e-07 c.37.1.12
1c9kA/T0344-1c9kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1c9kA/T0344-1c9kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2688e+003.64e-09 1c9kB c.37.1.11
1hpm/T0344-1hpm-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hpm/T0344-1hpm-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8800e+006.64e-08 1ba1 c.55.1.1
c.55.1.1
1mb3A/T0344-1mb3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mb3A/T0344-1mb3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3200e+002.08e-03 c.23.1.1
1jf8A/T0344-1jf8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jf8A/T0344-1jf8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9402e+001.14e+01 c.44.1.1
1z2lA/T0344-1z2lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z2lA/T0344-1z2lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.4851e+006.55e-13
1vp8A/T0344-1vp8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vp8A/T0344-1vp8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.5239e+008.37e-05

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001