(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0344 Hypothetical protein PF2046, Pyrococcus furiosus, 229 res
    • gi|18894260|gb|AAL82170.1|_1:176 hypothetical protein [Pyrococcus furiosus DSM 3638]
    • gi|18978418|ref|NP_579775.1| hypothetical protein PF2046 [Pyrococcus furiosus DSM 3638]
    • gi|3256453|dbj|BAA29136.1|_3:178 184aa long hypothetical protein [Pyrococcus horikoshii OT3]
    • gi|33359253|ref|NP_142085.2|_11:186 hypothetical protein PH0067 [Pyrococcus horikoshii OT3]
    • gi|57159905|dbj|BAD85835.1|_1:176 hypothetical protein, conserved [Thermococcus kodakarensis KOD1]
    • gi|57641581|ref|YP_184059.1| hypothetical protein TK1646 [Thermococcus kodakarensis KOD1]
    • gi|5457507|emb|CAB48998.1|_1:178 Hypothetical protein [Pyrococcus abyssi GE5]
    • gi|14520292|ref|NP_125767.1| hypothetical protein PAB2293 [Pyrococcus abyssi GE5]
                 10        20        30        40        50        60  
                 |         |         |         |         |         |  
   1 ...MRIVAADTGGAVLDETFEPIGLIATVAVLVEKPYRSAKEVMVKYANPYDYDLTGRQAIRDEV
   2 ...MRIVAADTGGAVLDETFEPIGLIATVAVLVEKPYRSAKEVMVKYANPYDYDLTGRQAIRDEV
   3 mk.MRIVAADTGGAVLDESFQPVGLIATVAVLVEKPYKTSKRFLVKYADPYNYDLSGRQAIRDEI
   4 gmkMRIVAADTGGAVLDESFQPVGLIATVAVLVEKPYKTSKRFLVKYADPYNYDLSGRQAIRDEI
   5 ...MRIVAADTGGALLDDAYNPLGLIATVAVLVEKPYRTASLSRVKYADPFNYDMSGRQAIRDEA
   6 ...MRIVAADTGGAVLDESLQPIGLISTVAVLVEKPYNTAKEFLVKFSDPYNYDLSGRQAILDEI


            70        80        90       100       110       120       
            |         |         |         |         |         |       
   1 LLAIELARKVKPDVIHLDSTLGGIELRKLDEPTIDALGISDKGKEVWKELSKDLQPLARKFWEET
   2 LLAIELARKVKPDVIHLDSTLGGIELRKLDEPTIDALGISDKGKEVWKELSKDLQPLARKFWEET
   3 ELAIELAREVSPDVIHLDSTLGGIEVRKLDESTIDALQISDRGKEIWKELSKDLQPLAKKFWEET
   4 ELAIELAREVSPDVIHLDSTLGGIEVRKLDESTIDALQISDRGKEIWKELSKDLQPLAKKFWEET
   5 YLAVELAREVKPDVVHLDSTIGGIEVRKLDEPTIEALGITDRGKEVWKDLSRDLQPLAKKLWEET
   6 NLAIELAKRTKPDVVHLDSTLGGIEVRKLDEPTIEALSISDKGKEVWKDLSKDVQPLAKKFWEET


      130       140       150       160         170         
       |         |         |         |           |         
   1 NIEIVAIGKSSVPVRIAEIYAGIYSAKWGIENVEK..EGHLIIGLPRYMEV...
   2 NIEIVAIGKSSVPVRIAEIYAGIYSAKWGIENVEK..EGHLIIGLPRYMEVnik
   3 GIEIIAIGKSSVPVRIAEIYAGIFSVKWALDNVKE..KGGLLVGYPGIWRLklr
   4 GIEIIAIGKSSVPVRIAEIYAGIFSVKWALDNVKE..KGGLLVGYPGIWRLklr
   5 GIEIIAIGKWSVPVRIAEIYSGIYTAKWAIEYARK..NGKVLVGLPRYMRVdik
   6 GIEILAIGKSSVPVRIAEIYSGIFSVKWAIEEVKKghKDHLIIGLPRYMGVeir