# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cqnA 77 6.45e-01 2anuA 255 8.19e-01 1svfB 38 1.12e+00 1svfB h.3.2.1 45764 2bvpA 276 1.14e+00 6ldh 330 1.50e+00 3ldh c.2.1.5,d.162.1.1 30161,42128 1tmy 120 1.53e+00 1dbwA c.23.1.1 31083 1u0sY 118 2.06e+00 c.23.1.1 107566 1mb3A 124 2.06e+00 c.23.1.1 78907 1jf8A 131 2.25e+00 c.44.1.1 66621 1yuwA 554 2.27e+00 1z47A 355 2.40e+00 2b5dX 528 2.47e+00 2fo1D 85 2.67e+00 1c9kA 180 2.67e+00 1c9kB c.37.1.11 32363 1srrA 124 2.81e+00 1dz3A c.23.1.1 31110 1yh3A 256 3.05e+00 2b99A 156 4.60e+00 2eshA 118 4.79e+00 1fobA 334 5.15e+00 c.1.8.3 83255 1bupA 386 5.75e+00 1ba1 c.55.1.1,c.55.1.1 33377,33378 1h54A 754 6.25e+00 a.102.1.4,b.30.5.3 60634,60635 1vp8A 201 6.40e+00 1kay 381 6.45e+00 1ba1 c.55.1.1,c.55.1.1 33385,33386 1l2tA 235 6.77e+00 c.37.1.12 73514 1ccwA 137 6.88e+00 1be1 c.23.6.1 31238 2d48A 129 7.39e+00 2ethA 154 8.48e+00 2co5A 99 9.12e+00 1mvoA 136 9.46e+00 c.23.1.1 79513 2feaA 236 1.01e+01 2d28C 149 1.04e+01 1a04A 215 1.17e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 2fbiA 142 1.22e+01 1qrvA 73 1.34e+01 1cktA a.21.1.1 16425 1ntyA 311 1.36e+01 a.87.1.1,b.55.1.1 103873,103874 2h88C 140 1.42e+01 1vk9A 151 1.42e+01 c.139.1.1 108640 1m6pA 152 1.56e+01 1m6pA b.64.1.1 27519 1vgjA 184 1.63e+01 1hziA 129 1.69e+01 1rcb a.26.1.2 61449 2f5gA 133 1.69e+01 1rcb 129 1.85e+01 1rcb a.26.1.2 16854 2d27A 149 1.86e+01 2eueA 279 1.86e+01 1w8iA 156 1.86e+01 1vdxA 184 1.94e+01 1ukxA 137 1.95e+01 d.20.1.3 107919 1e19A 314 1.97e+01 1b7bA c.73.1.1 34967 1i50H 146 2.21e+01 b.40.4.8 61761 1n13B 113 2.23e+01 1wovA 250 2.28e+01 1vhmA 195 2.39e+01 d.110.2.1 100691 1eceA 358 2.39e+01 1eceA c.1.8.3 28813 1zanL 214 2.40e+01 1s8nA 205 2.40e+01 c.23.1.1 105374 1pmi 440 2.57e+01 1pmi b.82.1.3 28114 1lldA 319 2.59e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1mzjA 339 2.73e+01 c.95.1.2,c.95.1.2 79700,79701 1g8sA 230 2.97e+01 c.66.1.3 90507 1t8tA 271 2.97e+01 c.37.1.5 106685 1ydwA 362 3.00e+01 1eciA 37 3.01e+01 1eciA a.33.1.1 16999 1r4pB 70 3.09e+01 b.40.2.1 97026 1ebfA 358 3.19e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 2bf5A 98 3.22e+01 2di4A 238 3.33e+01 1n2sA 299 3.39e+01 c.2.1.2 79857 1squA 155 3.53e+01 d.252.1.1 98971 1v71A 323 3.55e+01 1wd5A 208 3.56e+01 1fzqA 181 3.56e+01 1hurA c.37.1.8 32060 1wh8A 111 3.58e+01 1ufiA 64 3.60e+01 a.30.4.1 99336 2gqrA 237 3.72e+01 2au3A 407 3.84e+01 2ffcA 353 3.86e+01 1uv4A 293 4.00e+01 1b0uA 262 4.12e+01 1b0uA c.37.1.12 32370 1qxyA 252 4.31e+01 d.127.1.1 96565 1u9lA 70 4.35e+01 a.60.4.2 107751 2fbwC 141 4.39e+01 1pzgA 331 4.39e+01 c.2.1.5,d.162.1.1 95425,95426 1fbnA 230 4.49e+01 1fbnA c.66.1.3 34181 1ltzA 297 4.61e+01 d.178.1.1 74254 1e6cA 173 4.61e+01 1shkA c.37.1.2 59296 2gclA 261 4.68e+01 1yvkA 163 4.70e+01 1a0tP 413 4.78e+01 1a0tP f.4.3.2 43794 1xgyL 216 4.87e+01 1ej8A 140 5.24e+01 1qupA b.1.8.1 22300 1wjvA 79 5.42e+01 1xebA 150 5.48e+01 1wz9A 375 5.52e+01 1wudA 89 5.57e+01 2fcr 173 5.58e+01 1rcf c.23.5.1 31151 2gpiA 91 5.59e+01 1o5kA 306 5.62e+01 c.1.10.1 92504 1ztxL 212 5.78e+01 1twfH 146 5.80e+01 2f4nA 273 5.82e+01 1u04A 771 5.83e+01 b.34.14.1,c.55.3.10 107539,107540 1gheA 177 5.88e+01 d.108.1.1 76222 2gm5A 139 5.98e+01 2fyxA 143 6.05e+01 1m48A 133 6.06e+01 a.26.1.2 74443 1ehyA 294 6.07e+01 1ehyA c.69.1.11 34693 1cnzA 363 6.12e+01 1cnzA c.77.1.1 35061 1ytw 306 6.17e+01 1ytw c.45.1.2 32689 2b7kA 200 6.23e+01 2fbjL 213 6.25e+01 8fabA b.1.1.1,b.1.1.2 19850,20954 2fi9A 128 6.25e+01 1q9rA 219 6.37e+01 b.1.1.1,b.1.1.2 96305,96306 1mjuL 219 6.43e+01 b.1.1.1,b.1.1.2 91304,91305 2fpqA 444 6.53e+01 1dpjA 329 6.56e+01 1smrA b.50.1.2 26828 1vpqA 273 6.61e+01 2ac2A 309 6.63e+01 1vjoA 393 6.66e+01 c.67.1.3 100827 1zuhA 168 6.67e+01 2c2aA 258 6.70e+01 1cunA 213 6.70e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 1v9yA 167 6.70e+01 d.110.3.2 108454 1nni1 174 6.71e+01 1u0sA 86 6.83e+01 d.58.24.1 107565 1z2lA 423 6.88e+01 1yp2A 451 6.99e+01 1i06A 180 6.99e+01 1mup b.60.1.1 27131 1ytzT 107 7.00e+01 1knb 196 7.15e+01 1qhvA b.21.1.1 23841 1meoA 209 7.15e+01 c.65.1.1 79035 1qoiA 177 7.24e+01 2cpl b.62.1.1 27490 1p5jA 372 7.27e+01 c.79.1.1 104067 2ajuL 216 7.39e+01 1e6oL 212 7.51e+01 32c2A b.1.1.1,b.1.1.2 20494,21452 1jv4A 162 7.57e+01 b.60.1.1 67343 1j5sA 463 7.57e+01 c.1.9.8 71580 2bbkL 125 7.61e+01 2bbkL g.21.1.1 44882 2bl5A 140 7.61e+01 1mlbA 214 7.66e+01 8fabA b.1.1.1,b.1.1.2 20050,21092 1dozA 309 7.68e+01 1ak1 c.92.1.1 35592 2ac4A 309 7.72e+01 1xsvA 113 7.73e+01 1sxgA 280 7.75e+01 1z5yE 149 7.81e+01 1yqvL 211 7.82e+01 1sjiA 350 7.83e+01 1rypG 244 7.97e+01 d.153.1.4 41938 1w25A 459 8.16e+01 1ve5A 311 8.17e+01 1po5A 476 8.20e+01 a.104.1.1 94963 1t0fA 276 8.21e+01 1i05A 180 8.25e+01 1mup b.60.1.1 27130 1o8xA 146 8.34e+01 c.47.1.10 86681 1kqpA 271 8.35e+01 c.26.2.1 72883 1bylA 125 8.64e+01 1bylA d.32.1.2 38495 2bbhA 269 8.68e+01 1s12A 94 8.69e+01 1q6oA 216 8.79e+01 c.1.2.3 95986 1k4zA 159 8.80e+01 b.80.5.1 72070 1qk8A 146 8.91e+01 1ewxA c.47.1.10 33061 1qy1A 174 8.93e+01 b.60.1.1 96568 1pm3A 78 8.94e+01 b.41.1.2 94889 7odcA 424 8.95e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1lyvA 306 8.96e+01 c.45.1.2 74348 1sc3A 178 8.96e+01 c.17.1.1 105416 1vypX 364 8.98e+01 c.1.4.1 108905