# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fo1D 85 1.02e+00 1svfB 38 1.91e+00 1svfB h.3.2.1 45764 1tmy 120 2.76e+00 1dbwA c.23.1.1 31083 2co5A 99 2.97e+00 1qrvA 73 3.12e+00 1cktA a.21.1.1 16425 1mvoA 136 3.57e+00 c.23.1.1 79513 1u0sY 118 3.79e+00 c.23.1.1 107566 1srrA 124 4.23e+00 1dz3A c.23.1.1 31110 1o8vA 134 4.61e+00 b.60.1.2 86680 1ccwA 137 4.71e+00 1be1 c.23.6.1 31238 2d28C 149 5.41e+00 1mb3A 124 6.46e+00 c.23.1.1 78907 1jf8A 131 9.06e+00 c.44.1.1 66621 2cqnA 77 9.52e+00 1bylA 125 9.81e+00 1bylA d.32.1.2 38495 1o54A 277 1.04e+01 c.66.1.13 92482 6ldh 330 1.15e+01 3ldh c.2.1.5,d.162.1.1 30161,42128 1bx7 55 1.19e+01 1bx7 g.3.15.1 44355 1v71A 323 1.25e+01 2h88C 140 1.36e+01 1cnzA 363 1.36e+01 1cnzA c.77.1.1 35061 2btiA 63 1.54e+01 1w7jB 151 1.54e+01 2d27A 149 1.63e+01 1qp6A 35 1.77e+01 1qp6A k.16.1.1 46443 1ehyA 294 1.81e+01 1ehyA c.69.1.11 34693 1xdnA 277 1.84e+01 1vk9A 151 1.94e+01 c.139.1.1 108640 2bf5A 98 1.99e+01 1yuwA 554 2.03e+01 1w8iA 156 2.07e+01 1xniA 118 2.08e+01 2bbhA 269 2.11e+01 1pmi 440 2.17e+01 1pmi b.82.1.3 28114 1vp8A 201 2.34e+01 1h54A 754 2.39e+01 a.102.1.4,b.30.5.3 60634,60635 2b7kA 200 2.42e+01 1t6sA 162 2.47e+01 1zglP 249 2.53e+01 1m6pA 152 2.53e+01 1m6pA b.64.1.1 27519 1oqcA 125 2.58e+01 a.24.15.1 87264 2ethA 154 2.78e+01 2b5dX 528 3.00e+01 2fbwC 141 3.02e+01 2eshA 118 3.11e+01 1r7jA 95 3.16e+01 a.4.5.49 104836 1ssfA 156 3.26e+01 b.34.9.1,b.34.9.1 105982,105983 1m6kA 251 3.49e+01 e.3.1.1 78695 1bupA 386 3.50e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 2fbiA 142 3.53e+01 2anuA 255 3.53e+01 1msc 129 3.67e+01 1msc d.85.1.1 40039 1yh3A 256 3.69e+01 2gm5A 139 3.73e+01 1wwuA 99 3.84e+01 1kay 381 3.86e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 1zpvA 91 4.07e+01 1mzbA 136 4.21e+01 a.4.5.42 91497 1w2wA 211 4.21e+01 c.124.1.5 109130 1kcxA 518 4.25e+01 b.92.1.3,c.1.9.6 90953,90954 1eudB 396 4.26e+01 2scuB c.23.4.1,d.142.1.4 31150,41571 2fp4B 395 4.30e+01 1u2fA 90 4.40e+01 1u2fA d.58.7.1 39168 2occE 109 4.44e+01 2occE a.118.11.1 19224 1u04A 771 4.54e+01 b.34.14.1,c.55.3.10 107539,107540 1gheA 177 4.57e+01 d.108.1.1 76222 1a04A 215 4.71e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 2gpiA 91 4.71e+01 1eceA 358 4.91e+01 1eceA c.1.8.3 28813 1rwxA 178 5.15e+01 1wovA 250 5.15e+01 1sc3A 178 5.19e+01 c.17.1.1 105416 1s8nA 205 5.22e+01 c.23.1.1 105374 1i50H 146 5.22e+01 b.40.4.8 61761 1ru8A 232 5.24e+01 c.26.2.1 97849 2fjrA 189 5.32e+01 1iznB 277 5.32e+01 e.43.1.2 83848 1ysqA 193 5.48e+01 2d13A 227 5.76e+01 1v54E 109 5.88e+01 a.118.11.1 100326 1ualA 274 5.95e+01 c.116.1.4 88383 1twfH 146 5.99e+01 1kgcE 242 6.20e+01 b.1.1.1,b.1.1.2 77386,77387 1fzqA 181 6.27e+01 1hurA c.37.1.8 32060 1whsB 153 6.37e+01 1whtB 1hnuA 280 6.43e+01 1hnoA c.14.1.3 61096 2b3wA 168 6.48e+01 1whtB 153 6.50e+01 1whtB 1xfxA 777 6.50e+01 1bmqA 167 6.61e+01 1pauA c.17.1.1 30998 1pfsA 78 6.80e+01 1pfsA b.40.4.7 25391 2fcr 173 7.05e+01 1rcf c.23.5.1 31151 2fwuA 157 7.28e+01 1ej8A 140 7.30e+01 1qupA b.1.8.1 22300 1wh8A 111 7.37e+01 1eumA 165 7.58e+01 1eumA a.25.1.1 59507 1ymmE 249 7.72e+01 1fmtA 314 7.75e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1xsvA 113 7.85e+01 1is1A 185 7.94e+01 d.67.3.1 83704 2f5gA 133 8.08e+01 1c75A 71 8.10e+01 451c a.3.1.1 15796 1wjvA 79 8.19e+01 1r4pB 70 8.23e+01 b.40.2.1 97026 2b99A 156 8.39e+01 1vioA 243 8.56e+01 d.265.1.3,d.66.1.5 100762,100763 1u5tA 233 8.62e+01 a.4.5.54,a.4.5.54 107684,107685 1lldA 319 8.70e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1xrkA 124 8.79e+01 1y1xA 191 8.81e+01 1gs9A 165 8.87e+01 a.24.1.1 83313 1k4tA 592 8.90e+01 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265