# List of top-scoring protein chains for T0344.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nxmA 197 3.29e-01 b.82.1.1 86385 2frnA 278 3.42e+00 2c9yA 242 6.51e+00 1ak2 233 8.56e+00 1zin c.37.1.1,g.41.2.1 31894,45195 1ps2 60 1.01e+01 2pspA g.16.1.1 44746 1hi7A 60 1.10e+01 2pspA g.16.1.1 44744 1gyfA 62 1.12e+01 1gyfA d.76.1.1 39749 1wwrA 171 1.21e+01 1syxB 86 1.43e+01 1kngA 156 1.57e+01 c.47.1.10 72777 1wxxA 382 1.86e+01 1q8fA 313 1.93e+01 c.70.1.1 96203 1lxdA 100 2.38e+01 1lfdA d.15.1.5 37624 2gaxA 135 2.52e+01 2rgf 97 2.62e+01 1lfdA d.15.1.5 37627 2bepA 159 2.81e+01 1raxA 115 2.86e+01 1lfdA d.15.1.5 37626 2fug1 438 2.88e+01 1wvrA 221 2.96e+01 2hcyA 347 3.20e+01 1ylaA 202 3.30e+01 1xtnA 120 3.93e+01 1aky 221 3.98e+01 1zin c.37.1.1,g.41.2.1 31896,45197 3aky 221 3.99e+01 1zin c.37.1.1,g.41.2.1 31898,45199 1yyqA 374 4.53e+01 1jfgA 374 4.60e+01 a.128.1.5 66636 1kiyA 374 4.62e+01 a.128.1.5 72555 1gh6A 114 4.64e+01 a.2.3.1 65191 2aelA 374 4.66e+01 1xteA 154 4.77e+01 1y6iA 233 4.90e+01 1xpnA 170 4.97e+01 3hck 107 5.15e+01 1lckA d.93.1.1 40495 1q67A 231 5.19e+01 b.55.1.7 95960 1tmf2 267 5.22e+01 1aym2 1k7yA 577 5.27e+01 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 1h8gA 95 5.41e+01 b.109.1.1 65735 1mc7A 95 5.65e+01 b.36.1.1 91241 1ark 60 5.66e+01 1bb9 b.34.2.1 24473 2sas 185 5.83e+01 2sas a.39.1.5 17258 2fhqA 141 5.96e+01 2b2hA 399 5.99e+01 1m2tB 263 6.17e+01 b.42.2.1,b.42.2.1 84762,84763 2awaA 390 6.19e+01 2bl7A 103 6.34e+01 1zakA 222 6.51e+01 1zin c.37.1.1,g.41.2.1 31913,45202 1ac0 108 6.59e+01 1kum b.3.1.1 22526 2bl8A 103 6.61e+01 1puuB 263 6.72e+01 b.42.2.1,b.42.2.1 104318,104319 1gh9A 71 6.83e+01 1gh9A g.41.6.1 45266 1jsg 114 6.84e+01 1a1x b.63.1.1 27513 2cp0A 95 6.90e+01 1z5zA 271 7.18e+01 1oedE 260 7.28e+01 f.36.1.1 86915 1b3sD 90 7.43e+01 1ay7B c.9.1.1 30846 1lfdA 87 7.51e+01 1lfdA d.15.1.5 37622 2bmlA 126 7.54e+01 1msk 331 7.58e+01 1msk d.173.1.1 42495 2grqA 161 7.59e+01 1hcxA 127 7.64e+01 b.109.1.1 65800 1qhlA 227 7.72e+01 1qhlA c.37.1.12 32382 1yhwA 297 7.76e+01 1oqlB 263 7.79e+01 b.42.2.1,b.42.2.1 87307,87308 2grrA 161 7.87e+01 1cv8 174 8.29e+01 1cv8 d.3.1.1 37089 1q8bA 105 8.31e+01 d.58.4.6 96201 1tme2 267 8.32e+01 1aym2 1fxzA 476 8.35e+01 b.82.1.2,b.82.1.2 65059,65060 1ud1A 476 8.39e+01 b.82.1.2,b.82.1.2 99202,99203 1zo2A 129 8.57e+01 1ucxA 476 8.65e+01 b.82.1.2,b.82.1.2 99192,99193 1whjA 102 8.67e+01 1yhvA 297 8.68e+01 1gvmA 136 8.72e+01 b.109.1.1 70612 1z5sA 158 8.77e+01 1kpsA 159 8.80e+01 d.20.1.1 68786 1u9aA 160 8.83e+01 1u9aA d.20.1.1 38333 1a3s 160 8.86e+01 1u9aA d.20.1.1 38335 2grnA 161 8.87e+01 1onkB 263 8.91e+01 b.42.2.1,b.42.2.1 93360,93361 2grpA 161 8.95e+01 2groA 161 8.98e+01