# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nxmA 197 3.82e-01 b.82.1.1 86385 2awaA 390 1.94e+00 1gh9A 71 3.72e+00 1gh9A g.41.6.1 45266 1gyfA 62 4.02e+00 1gyfA d.76.1.1 39749 2ahjA 206 4.74e+00 2ahjA d.149.1.1 41772 2ahjC 206 4.76e+00 2ahjA d.149.1.1 41773 2cz1A 206 4.89e+00 1ahjA 207 5.05e+00 2ahjA d.149.1.1 41774 1q8fA 313 6.28e+00 c.70.1.1 96203 1syxB 86 7.51e+00 1eo1A 124 8.47e+00 1eo1A c.55.5.1 33739 1ps2 60 9.87e+00 2pspA g.16.1.1 44746 1wwrA 171 1.04e+01 1wxxA 382 1.15e+01 2bepA 159 1.33e+01 1ak2 233 1.41e+01 1zin c.37.1.1,g.41.2.1 31894,45195 1nnwA 252 1.45e+01 d.159.1.5 80674 1wz4A 23 1.78e+01 1th0A 226 1.82e+01 d.3.1.7 106903 1xtnA 120 1.91e+01 1m2tB 263 1.95e+01 b.42.2.1,b.42.2.1 84762,84763 1v37A 177 2.02e+01 1xteA 154 2.07e+01 1i1qA 520 2.26e+01 1qdlA d.161.1.1 61543 1s6lA 212 2.28e+01 1acz 108 2.58e+01 1kum b.3.1.1 22524 1h8gA 95 2.69e+01 b.109.1.1 65735 2fhqA 141 2.71e+01 1vqoW 154 2.72e+01 1fjgE 162 2.76e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 2avtA 378 2.85e+01 1doi 128 2.90e+01 1awd d.15.4.1 37676 2fa8A 105 3.01e+01 1ark 60 3.12e+01 1bb9 b.34.2.1 24473 2c7xA 436 3.17e+01 1z5zA 271 3.29e+01 1kum 108 3.31e+01 1kum b.3.1.1 22525 1pk6A 133 3.45e+01 b.22.1.1 94801 1a67 108 3.73e+01 1cewI d.17.1.2 38000 1rdg 53 3.74e+01 1rb9 g.41.5.1 45221 1s72W 154 3.74e+01 d.59.1.1 105342 1y42X 392 3.80e+01 1jj2V 154 3.85e+01 1ffkT d.59.1.1 63107 1vzwA 244 3.86e+01 1el4A 195 3.89e+01 1ej3A a.39.1.5 59453 1dik 874 3.97e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1n7zA 334 4.10e+01 b.127.1.1 85380 1t4wA 196 4.15e+01 b.2.5.2 106427 1gh6A 114 4.18e+01 a.2.3.1 65191 1nnxA 109 4.25e+01 b.40.10.1 92013 1j5eE 161 4.30e+01 d.14.1.1,d.50.1.2 71547,71548 1hcxA 127 4.46e+01 b.109.1.1 65800 8rxnA 52 4.51e+01 1rb9 g.41.5.1 45215 1o12A 376 4.54e+01 b.92.1.5,c.1.9.10 80758,80759 1gdhA 320 4.82e+01 1gdhA c.2.1.4,c.23.12.1 30095,31355 1lxdA 100 4.86e+01 1lfdA d.15.1.5 37624 2ghpA 292 4.93e+01 1tqzA 133 5.00e+01 1feuA 206 5.12e+01 1feuA b.53.1.1 59801 1k47A 337 5.37e+01 d.14.1.5,d.58.26.4 72040,72041 1dabA 539 5.42e+01 1dabA b.80.1.7 28049 1y6iA 233 5.49e+01 2amyA 246 5.60e+01 1nziA 159 5.62e+01 b.23.1.1,g.3.11.1 86449,86450 2sas 185 5.71e+01 2sas a.39.1.5 17258 1rb9 53 5.82e+01 1rb9 g.41.5.1 45214 1jf0A 195 5.83e+01 1ej3A a.39.1.5 62926 1ac0 108 5.88e+01 1kum b.3.1.1 22526 1z63A 500 5.98e+01 1mv4A 37 6.02e+01 h.1.5.1 79496 1ug6A 431 6.04e+01 c.1.8.4 88490 1gvmA 136 6.24e+01 b.109.1.1 70612 1aky 221 6.30e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1fxzA 476 6.30e+01 b.82.1.2,b.82.1.2 65059,65060 1vpkA 378 6.32e+01 2bjbA 462 6.35e+01 1vqoU 66 6.40e+01 2grrA 161 6.41e+01 1jsg 114 6.60e+01 1a1x b.63.1.1 27513 1woqA 267 6.78e+01 c.55.1.10,c.55.1.10 109462,109463 1tovA 98 6.85e+01 b.34.10.1 107179 1ck7A 631 7.02e+01 1ck7A b.66.1.1,g.14.1.2,g.14.1.2,g.14.1.2,a.20.1.2,d.92.1.11 27538,44674,44675,44676,58969,58970 1p5zB 263 7.14e+01 c.37.1.1 87815 1msk 331 7.16e+01 1msk d.173.1.1 42495 2gaxA 135 7.16e+01 1gy7A 125 7.17e+01 d.17.4.2 70738 2hcyA 347 7.19e+01 1sz6B 263 7.20e+01 1voqa 90 7.27e+01 1jj2T 66 7.28e+01 1ffkR g.39.1.6 63105 1a62 130 7.39e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1lplA 95 7.64e+01 b.34.10.1 74173 1l6oA 95 7.83e+01 b.36.1.1 84534 1fa8A 135 7.84e+01 1qipA d.32.1.1 38486 1hvc 203 7.94e+01 1hvc b.50.1.1 26614 1s72U 66 7.96e+01 g.39.1.6 105340 1qv1A 195 8.01e+01 a.39.1.5 96347 1u9aA 160 8.03e+01 1u9aA d.20.1.1 38333 1ld4A 264 8.05e+01 i.6.1.1 77886 1l4sA 112 8.08e+01 d.204.1.1 77693 1jf2A 195 8.11e+01 1ej3A a.39.1.5 62930 1q8bA 105 8.17e+01 d.58.4.6 96201 1raxA 115 8.20e+01 1lfdA d.15.1.5 37626 1banA 110 8.54e+01 1b20A d.1.1.2 36197 1k1xA 659 8.59e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1npsA 88 8.61e+01 1prs b.11.1.1 23622 1zgoA 223 8.61e+01 1gikA 261 8.66e+01 d.165.1.1 90513 1c4rA 182 8.66e+01 1c4rA b.29.1.4 24229 1yh6A 179 8.79e+01 1brhA 110 8.80e+01 1b20A d.1.1.2 36151 1cnt3 187 8.83e+01 1cnt3 1a3s 160 8.91e+01 1u9aA d.20.1.1 38335 1a63 130 8.92e+01 1a62 a.140.3.1,b.40.4.5 64710,64711 2rgf 97 8.93e+01 1lfdA d.15.1.5 37627