# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nxmA 197 2.17e-01 b.82.1.1 86385 2cz1A 206 1.45e+00 1gh9A 71 1.62e+00 1gh9A g.41.6.1 45266 1wwrA 171 2.56e+00 1q8fA 313 2.89e+00 c.70.1.1 96203 1syxB 86 3.24e+00 1eo1A 124 4.00e+00 1eo1A c.55.5.1 33739 1nnwA 252 4.21e+00 d.159.1.5 80674 2bepA 159 4.98e+00 1xteA 154 6.27e+00 1m2tB 263 6.85e+00 b.42.2.1,b.42.2.1 84762,84763 2fhqA 141 7.51e+00 1wxxA 382 8.11e+00 1cewI 108 9.08e+00 1cewI d.17.1.2 37999 1v37A 177 9.82e+00 1vqoW 154 1.02e+01 1z5zA 271 1.04e+01 1wz4A 23 1.05e+01 1fjgE 162 1.15e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1th0A 226 1.16e+01 d.3.1.7 106903 1n7zA 334 1.22e+01 b.127.1.1 85380 2fa8A 105 1.22e+01 1doi 128 1.35e+01 1awd d.15.4.1 37676 1i1qA 520 1.49e+01 1qdlA d.161.1.1 61543 1tqzA 133 1.49e+01 1rdg 53 1.50e+01 1rb9 g.41.5.1 45221 1vzwA 244 1.52e+01 1pk6A 133 1.66e+01 b.22.1.1 94801 1s6lA 212 1.68e+01 1o12A 376 1.71e+01 b.92.1.5,c.1.9.10 80758,80759 1mv4A 37 1.87e+01 h.1.5.1 79496 2avtA 378 1.88e+01 2gaxA 135 2.02e+01 2bjbA 462 2.05e+01 1nnxA 109 2.11e+01 b.40.10.1 92013 1t4wA 196 2.15e+01 b.2.5.2 106427 1dabA 539 2.20e+01 1dabA b.80.1.7 28049 2c7xA 436 2.29e+01 1rb9 53 2.31e+01 1rb9 g.41.5.1 45214 1q8bA 105 2.44e+01 d.58.4.6 96201 1vpkA 378 2.56e+01 1feuA 206 2.56e+01 1feuA b.53.1.1 59801 1a62 130 2.65e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1nziA 159 2.82e+01 b.23.1.1,g.3.11.1 86449,86450 1aky 221 2.83e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1gy7A 125 2.85e+01 d.17.4.2 70738 2ghpA 292 2.88e+01 1msk 331 2.93e+01 1msk d.173.1.1 42495 2grrA 161 2.99e+01 1gdhA 320 3.02e+01 1gdhA c.2.1.4,c.23.12.1 30095,31355 1x0hA 112 3.02e+01 1z90A 469 3.10e+01 1k47A 337 3.13e+01 d.14.1.5,d.58.26.4 72040,72041 1vqoU 66 3.19e+01 1p5zB 263 3.24e+01 c.37.1.1 87815 1ug6A 431 3.41e+01 c.1.8.4 88490 1woqA 267 3.59e+01 c.55.1.10,c.55.1.10 109462,109463 2cr9A 139 3.71e+01 1npsA 88 3.71e+01 1prs b.11.1.1 23622 1lfdA 87 3.73e+01 1lfdA d.15.1.5 37622 1zgoA 223 3.83e+01 1nezG 128 3.86e+01 b.1.1.1 85592 1u9aA 160 3.87e+01 1u9aA d.20.1.1 38333 1c4rA 182 3.90e+01 1c4rA b.29.1.4 24229 1voqa 90 4.08e+01 1qv1A 195 4.53e+01 a.39.1.5 96347 1f9zA 135 4.54e+01 1qipA d.32.1.1 38484 2f0aA 98 4.62e+01 1y8oB 128 4.70e+01 1wriA 93 4.72e+01 1l7mA 211 4.75e+01 c.108.1.4 73664 1j1qA 261 4.89e+01 d.165.1.1 90768 1tw7A 99 4.90e+01 2hcyA 347 5.00e+01 1t2wA 145 5.01e+01 b.100.1.1 106289 1y42X 392 5.01e+01 1io1A 398 5.22e+01 1io1A e.32.1.1 62611 2c4bA 143 5.32e+01 1guzA 310 5.56e+01 c.2.1.5,d.162.1.1 65586,65587 1i4uA 181 5.59e+01 b.60.1.1 61732 1o22A 170 5.66e+01 d.238.1.1 86557 1q67A 231 5.68e+01 b.55.1.7 95960 1y9lA 115 5.81e+01 1nqjA 119 5.91e+01 b.23.2.1 86031 1cv8 174 6.20e+01 1cv8 d.3.1.1 37089 1wm1A 317 6.20e+01 c.69.1.7 109405 1a2pA 110 6.27e+01 1b20A d.1.1.2 36140 1nh0A 99 6.34e+01 b.50.1.1 91869 1zbqA 327 6.43e+01 1wi0A 113 6.62e+01 1vqoE 178 6.63e+01 1tovA 98 6.65e+01 b.34.10.1 107179 2d93A 134 6.75e+01 1z47A 355 6.78e+01 1rc9A 221 6.78e+01 2gnrA 145 6.92e+01 1tq5A 242 7.02e+01 1h2cA 140 7.04e+01 b.31.1.1 83462 1qipA 183 7.14e+01 1qipA d.32.1.1 38470 1ijaA 148 7.22e+01 1ijaA b.100.1.1 62484 2d2mC 147 7.31e+01 1jatA 155 7.33e+01 1u9aA d.20.1.1 62818 2d7nA 93 7.39e+01 1a7i 81 7.43e+01 1b8tA g.39.1.3,g.39.1.3 45143,45144 1zo2A 129 7.59e+01 1wstA 417 7.82e+01 1nszA 347 7.87e+01 b.30.5.4 80724 1frrA 95 8.14e+01 1awd d.15.4.1 37674 2cdcA 366 8.24e+01 1uzpA 162 8.25e+01 g.3.11.1,g.3.11.1,g.23.1.1 100232,100233,100234 2ghsA 326 8.32e+01 1icfI 65 8.52e+01 1icfI g.28.1.1 44958 1vplA 256 8.53e+01 2ai4A 119 8.60e+01 1llnA 262 8.73e+01 d.165.1.1 84625 1wfyA 104 8.80e+01 2ffuA 501 8.88e+01 2as9A 210 8.90e+01 1xdfA 157 8.96e+01