# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nxmA 197 1.84e-01 b.82.1.1 86385 1wwrA 171 9.24e-01 1woqA 267 1.72e+00 c.55.1.10,c.55.1.10 109462,109463 1z90A 469 1.92e+00 1w8oA 601 2.21e+00 1m98A 317 2.32e+00 a.175.1.1,d.17.4.6 78866,78867 1ojqA 212 2.51e+00 d.166.1.1 93146 3nul 130 2.52e+00 3nul d.110.1.1 40891 2gupA 292 2.59e+00 1u9aA 160 2.97e+00 1u9aA d.20.1.1 38333 2grrA 161 3.04e+00 1ri6A 343 3.36e+00 b.69.11.1 97503 1llnA 262 3.39e+00 d.165.1.1 84625 2al2A 436 3.58e+00 1oneA 436 3.58e+00 4enl c.1.11.1,d.54.1.1 29200,38844 2al1A 436 3.58e+00 1acf 125 3.67e+00 3nul d.110.1.1 40882 1tqzA 133 3.99e+00 1kyqA 274 4.44e+00 c.2.1.11,e.37.1.1 73281,73282 1qy6A 274 4.61e+00 b.47.1.1 96574 1eo1A 124 4.75e+00 1eo1A c.55.5.1 33739 1qipA 183 4.90e+00 1qipA d.32.1.1 38470 1f9zA 135 5.11e+00 1qipA d.32.1.1 38484 1lcyA 325 5.14e+00 b.36.1.4,b.47.1.1 73834,73835 2bepA 159 5.45e+00 1df7A 159 5.69e+00 3dfr c.71.1.1 34885 1khdA 345 5.76e+00 a.46.2.1,c.27.1.1 77400,77401 1icfI 65 6.07e+00 1icfI g.28.1.1 44958 1ne8A 117 6.15e+00 b.34.6.2 80424 1dq3A 454 6.90e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1xfsA 178 7.12e+00 d.129.3.5 109589 1nziA 159 7.35e+00 b.23.1.1,g.3.11.1 86449,86450 1q8fA 313 8.57e+00 c.70.1.1 96203 2avtA 378 9.19e+00 1fjgE 162 9.19e+00 1pkp d.14.1.1,d.50.1.2 37553,38789 1q5hA 147 9.60e+00 b.85.4.1 95893 1xrtA 467 9.62e+00 1zn6A 227 9.66e+00 1qz8A 113 9.68e+00 b.140.1.1 96619 2d7nA 93 1.06e+01 1lvoA 302 1.06e+01 b.47.1.4 74284 2ai4A 119 1.08e+01 1dynA 125 1.09e+01 1dynA b.55.1.1 26955 1zo2A 129 1.10e+01 1o12A 376 1.16e+01 b.92.1.5,c.1.9.10 80758,80759 1qv1A 195 1.16e+01 a.39.1.5 96347 1z7gA 217 1.20e+01 2cn3A 737 1.21e+01 1lfdA 87 1.21e+01 1lfdA d.15.1.5 37622 1vqoW 154 1.25e+01 2ffsA 157 1.27e+01 2fp8A 322 1.27e+01 2as0A 396 1.29e+01 1vpkA 378 1.29e+01 2gwdA 449 1.30e+01 1vplA 256 1.32e+01 2gjdA 157 1.34e+01 1u2cA 246 1.34e+01 b.1.6.2,d.272.1.1 107610,107611 1vr3A 191 1.39e+01 1cojA 212 1.40e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 2cy2A 174 1.40e+01 1q8bA 105 1.44e+01 d.58.4.6 96201 1vqoQ 96 1.44e+01 1dytA 133 1.47e+01 7rsa d.5.1.1 37288 1pm3A 78 1.53e+01 b.41.1.2 94889 2c2xA 281 1.54e+01 1q67A 231 1.66e+01 b.55.1.7 95960 1h0hB 214 1.71e+01 d.58.1.5 76437 1fvuB 125 1.71e+01 1ixxB d.169.1.1 42346 1a2pA 110 1.72e+01 1b20A d.1.1.2 36140 1noyA 388 1.79e+01 1clqA c.55.3.5 33713 1rypH 205 1.80e+01 d.153.1.4 41876 1syxB 86 1.80e+01 1o97C 264 1.87e+01 c.26.2.3 81232 2d93A 134 1.90e+01 2c4bA 143 1.90e+01 1ww9A 392 1.98e+01 1pot 325 2.00e+01 1pot c.94.1.1 35807 1npsA 88 2.01e+01 1prs b.11.1.1 23622 1cv8 174 2.07e+01 1cv8 d.3.1.1 37089 1jtdB 273 2.08e+01 b.69.5.2 67265 1uv4A 293 2.12e+01 2ftwA 521 2.16e+01 1wiwA 290 2.19e+01 1j1qA 261 2.19e+01 d.165.1.1 90768 1ijtA 128 2.20e+01 1bfg b.42.1.1 62510 1ctt 294 2.21e+01 1ctt c.97.1.1,c.97.1.1 36022,36023 1kjkA 64 2.22e+01 d.10.1.4 72613 1w2fA 276 2.24e+01 d.143.1.3 109125 1hd2A 161 2.26e+01 c.47.1.10 60962 1fzvA 132 2.26e+01 1vpfA g.17.1.1 60159 1jmsA 381 2.30e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 2biwA 490 2.34e+01 1s5aA 150 2.36e+01 d.17.4.10 98525 1b35A 260 2.39e+01 1b35A b.121.4.1 23333 1x31C 206 2.43e+01 2fuvA 549 2.45e+01 1dx5I 118 2.49e+01 1dx5I g.3.11.1,g.3.11.1,g.3.11.1 44302,44303,44304 1m1fA 110 2.50e+01 b.34.6.2 78401 2cr9A 139 2.50e+01 2b5nA 323 2.56e+01 2biqA 219 2.62e+01 2frnA 278 2.64e+01 1rzhH 260 2.64e+01 b.41.1.1,f.23.10.1 98162,98163 1mml 265 2.73e+01 1mml e.8.1.2 43015 2ac0A 200 2.74e+01 1mkkA 96 2.75e+01 g.17.1.1 79240 1h6hA 143 2.80e+01 d.189.1.1 65681 1wkt 88 2.80e+01 1wkt b.11.1.2 23630 1s4bP 674 2.82e+01 d.92.1.5 105252 1mvfD 82 2.88e+01 b.129.1.1 85143 1jofA 365 2.95e+01 b.69.10.1 71775 2cdcA 366 2.95e+01 1txkA 498 2.98e+01 b.1.18.2,b.30.5.9 107425,107426 1juhA 350 2.99e+01 b.82.1.5 71884 1q0qA 406 3.00e+01 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1qcxA 359 3.04e+01 1qcxA b.80.1.2 28028 1olzA 663 3.06e+01 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1z1zA 131 3.08e+01 1a62 130 3.10e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1x1iA 752 3.11e+01 2f4wA 187 3.12e+01 1khoA 370 3.20e+01 a.124.1.1,b.12.1.3 72489,72490 1iuaA 83 3.20e+01 g.35.1.1 71438 1jatA 155 3.21e+01 1u9aA d.20.1.1 62818 1w7jA 795 3.21e+01 1qwyA 291 3.23e+01 b.84.3.2 96509 1wz4A 23 3.25e+01 2fymA 431 3.25e+01 1mugA 168 3.25e+01 1mugA c.18.1.2 31030 2fhfA 1083 3.25e+01 1cruA 454 3.26e+01 1c9uA b.68.2.1 27617 1ws0A 156 3.30e+01 2gfaA 119 3.38e+01 1o0xA 262 3.44e+01 d.127.1.1 80755 1gpeA 587 3.46e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1svpA 161 3.46e+01 1svpA b.47.1.3 26384 1k7cA 233 3.50e+01 c.23.10.4 68267 1s6lA 212 3.53e+01 1xer 103 3.55e+01 1xer d.58.1.3 38990 1zhhB 242 3.67e+01 1vrtA 560 3.67e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 1voqa 90 3.69e+01 1ts9A 102 3.73e+01 1pk6A 133 3.78e+01 b.22.1.1 94801 1z3qA 200 3.82e+01 1yfuA 174 3.82e+01 2al3A 90 3.83e+01 1lvmA 229 3.89e+01 b.47.1.3 78243 1lk2A 274 3.92e+01 b.1.1.2,d.19.1.1 91056,91057 1uq5A 263 3.95e+01 d.165.1.1 99778 1vquA 374 3.95e+01 1mrg 263 3.97e+01 1mrj d.165.1.1 42183 2gqrA 237 4.07e+01 2ck3D 482 4.14e+01 1rqpA 299 4.21e+01 b.141.1.1,c.132.1.1 97754,97755 1svvA 359 4.23e+01 c.67.1.1 106054 1vk0A 206 4.24e+01 c.55.3.5 100839 1ca1 370 4.29e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1xaoA 121 4.33e+01 1regX 122 4.35e+01 1regX d.58.27.1 39406 2fa8A 105 4.41e+01 1ufkA 254 4.46e+01 c.66.1.39 99340 1fviA 297 4.48e+01 1fviA b.40.4.6,d.142.2.1 25364,41578 1n7zA 334 4.50e+01 b.127.1.1 85380 1ecsA 126 4.52e+01 1ecsA d.32.1.2 59407 1lkkA 105 4.54e+01 1lckA d.93.1.1 40412 1wfyA 104 4.58e+01 1f89A 291 4.62e+01 d.160.1.1 64988 1g291 372 4.62e+01 1g291 1p5zB 263 4.66e+01 c.37.1.1 87815 1dkzA 219 4.67e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1vrmA 325 4.70e+01 2ge3A 170 4.75e+01 1ywfA 296 4.76e+01 1w9sA 142 4.89e+01 2bryA 497 4.97e+01 1r45A 204 4.99e+01 1yopA 83 5.06e+01 1vmfA 145 5.06e+01 1sixA 174 5.07e+01 b.85.4.1 98892 1yifA 533 5.10e+01 1yhfA 115 5.12e+01 1xh3A 276 5.13e+01 1i3zA 103 5.13e+01 d.93.1.1 83667 1q1uA 144 5.13e+01 b.42.1.1 95608 1g5aA 628 5.16e+01 b.71.1.1,c.1.8.1 65152,65153 1so9A 164 5.17e+01 b.146.1.1 105842 1h8eD 482 5.21e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1gbg 214 5.23e+01 1axkA b.29.1.2 24171 1vkdA 338 5.25e+01 b.67.2.4 108644 1vzqH 250 5.28e+01 1rb9 53 5.28e+01 1rb9 g.41.5.1 45214 1zt3A 80 5.30e+01 2gdnA 267 5.30e+01 1nnxA 109 5.31e+01 b.40.10.1 92013 2c9wA 169 5.33e+01 1h8dH 260 5.39e+01 5ptp 1umgA 362 5.41e+01 d.280.1.1 107956 1cs6A 382 5.44e+01 1cs6A b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 1vmjA 151 5.45e+01 1ujcA 161 5.56e+01 2exnA 136 5.63e+01 1y0gA 191 5.67e+01 1nszA 347 5.68e+01 b.30.5.4 80724 1z47A 355 5.71e+01 2cf8H 257 5.80e+01 1ytaA 180 5.80e+01 2ghsA 326 5.88e+01 1vzwA 244 5.88e+01 2d0oA 610 5.93e+01 1ihkA 174 5.93e+01 1bfg b.42.1.1 62384 1wba 175 5.94e+01 1wba b.42.4.1 25591 2h0eA 121 6.05e+01 1j9lA 247 6.07e+01 c.106.1.1 62762 1gtkA 313 6.09e+01 c.94.1.1,d.50.2.1 76346,76347 1yovA 537 6.09e+01 1w9iA 770 6.15e+01 1q8iA 783 6.16e+01 c.55.3.5,e.8.1.1 96208,96209 2a38A 194 6.23e+01 1g24A 211 6.24e+01 1g24A d.166.1.1 42270 1vloA 381 6.25e+01 b.44.2.1,d.250.1.1 108838,108839 1xeaA 323 6.26e+01 c.2.1.3,d.81.1.5 109572,109573 1f2tA 149 6.31e+01 1f2tA c.37.1.12 32373 1t0hA 132 6.43e+01 b.34.2.1 106207 2h3bA 494 6.48e+01 1mwqA 101 6.48e+01 d.58.4.7 91481 1l8bA 190 6.50e+01 d.86.1.1 73683 1t7vA 278 6.53e+01 2bw8A 227 6.54e+01 1fl2A 310 6.59e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 2napA 723 6.61e+01 2napA b.52.2.2,c.81.1.1 26926,35334 2czlA 272 6.63e+01 1w2lA 99 6.65e+01 1zn8A 180 6.69e+01 1wvqA 167 6.74e+01 1bqk 124 6.75e+01 1bqk b.6.1.1 22889 1vqqA 646 6.76e+01 1i1qB 192 6.76e+01 1qdlB c.23.16.1 61544 1o13A 136 6.82e+01 c.55.5.1 80762 2gq1A 332 6.86e+01 1pkhA 204 6.86e+01 b.85.4.1 94832 1esc 306 6.94e+01 1esc c.23.10.1 31334 1cyx 205 6.95e+01 1cyx b.6.1.2 23023 1gl4B 98 6.97e+01 b.1.1.4 65288 1v2bA 177 6.99e+01 d.107.1.2 108279 1tq5A 242 7.02e+01 1vqoU 66 7.09e+01 1vmeA 410 7.10e+01 c.23.5.1,d.157.1.3 108893,108894 1oboA 169 7.17e+01 c.23.5.1 86776 1khiA 176 7.25e+01 b.34.5.2,b.40.4.5 77408,77409 1tc1A 220 7.27e+01 1tc1A c.61.1.1 34083 1tzfA 259 7.29e+01 c.68.1.13 107476 1qfoA 119 7.33e+01 1qfoA b.1.1.1 19708 1n3yA 198 7.36e+01 c.62.1.1 79976 1u7pA 164 7.45e+01 2f5tX 233 7.55e+01 1jmxB 349 7.58e+01 b.69.2.2 66906 1ofdA 1520 7.65e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1wv3A 238 7.67e+01 1gh9A 71 7.69e+01 1gh9A g.41.6.1 45266 2gzqA 200 7.73e+01 1zc3B 113 7.76e+01 1gvhA 396 7.77e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1wxcB 134 7.85e+01 1frrA 95 7.85e+01 1awd d.15.4.1 37674 2pia 321 7.87e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2c27A 315 7.96e+01 1o5uA 101 7.96e+01 b.82.1.8 92518 2gaxA 135 8.06e+01 1p6oA 161 8.13e+01 c.97.1.2 94185 1cjxA 357 8.14e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1l7mA 211 8.16e+01 c.108.1.4 73664 2b2yA 187 8.23e+01 1n71A 180 8.25e+01 d.108.1.1 85370 2b4wA 315 8.34e+01 1fxkC 133 8.34e+01 1fxkC a.2.5.1 15702 1wriA 93 8.36e+01 1h6dA 433 8.38e+01 c.2.1.3,d.81.1.5 65656,65657 1wkqA 164 8.39e+01 c.97.1.2 109393 1y4hA 188 8.43e+01 1io1A 398 8.44e+01 1io1A e.32.1.1 62611 1z2uA 150 8.48e+01 1wucA 250 8.54e+01 1z7kB 62 8.60e+01 1rreA 200 8.61e+01 d.14.1.10 97791 1mxgA 435 8.72e+01 b.71.1.1,c.1.8.1 85193,85194 1vavA 222 8.87e+01 b.29.1.18 108472 1ee8A 266 8.93e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1nnwA 252 8.99e+01 d.159.1.5 80674