# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nxmA 197 4.66e-02 b.82.1.1 86385 1tqzA 133 1.01e+00 3nul 130 1.36e+00 3nul d.110.1.1 40891 1z90A 469 2.13e+00 1wwrA 171 3.29e+00 1acf 125 3.32e+00 3nul d.110.1.1 40882 1lfdA 87 3.82e+00 1lfdA d.15.1.5 37622 4enl 436 4.81e+00 4enl c.1.11.1,d.54.1.1 29202,38846 1llnA 262 5.25e+00 d.165.1.1 84625 2al2A 436 6.14e+00 1oneA 436 6.14e+00 4enl c.1.11.1,d.54.1.1 29200,38844 2al1A 436 6.14e+00 2awaA 390 6.17e+00 1q8fA 313 7.21e+00 c.70.1.1 96203 2gupA 292 9.81e+00 2grrA 161 1.02e+01 1u9aA 160 1.02e+01 1u9aA d.20.1.1 38333 1q8bA 105 1.04e+01 d.58.4.6 96201 1fa8A 135 1.05e+01 1qipA d.32.1.1 38486 1h8gA 95 1.12e+01 b.109.1.1 65735 1xfsA 178 1.22e+01 d.129.3.5 109589 1ue1A 164 1.24e+01 b.40.4.3 99243 1ri6A 343 1.28e+01 b.69.11.1 97503 2ffsA 157 1.30e+01 1eo1A 124 1.32e+01 1eo1A c.55.5.1 33739 1qipA 183 1.43e+01 1qipA d.32.1.1 38470 1eur 365 1.45e+01 1eut b.68.1.1 27607 1ww9A 392 1.51e+01 1f9zA 135 1.58e+01 1qipA d.32.1.1 38484 1juhA 350 1.66e+01 b.82.1.5 71884 1m98A 317 1.69e+01 a.175.1.1,d.17.4.6 78866,78867 1gyfA 62 1.74e+01 1gyfA d.76.1.1 39749 1s4bP 674 1.87e+01 d.92.1.5 105252 1yh6A 179 1.89e+01 2cr9A 139 1.92e+01 1qy6A 274 1.95e+01 b.47.1.1 96574 1icfI 65 2.03e+01 1icfI g.28.1.1 44958 1wcqA 601 2.04e+01 1w8oA 601 2.05e+01 1s5aA 150 2.09e+01 d.17.4.10 98525 1dx5I 118 2.11e+01 1dx5I g.3.11.1,g.3.11.1,g.3.11.1 44302,44303,44304 1wfyA 104 2.18e+01 1ne8A 117 2.25e+01 b.34.6.2 80424 2cy2A 174 2.27e+01 1pm3A 78 2.32e+01 b.41.1.2 94889 1opoA 348 2.34e+01 b.121.4.7 87240 1qz8A 113 2.46e+01 b.140.1.1 96619 2as0A 396 2.51e+01 1xrtA 467 2.60e+01 2bryA 497 2.60e+01 1lcyA 325 2.67e+01 b.36.1.4,b.47.1.1 73834,73835 1tq5A 242 2.78e+01 1n7zA 334 2.79e+01 b.127.1.1 85380 1pot 325 2.80e+01 1pot c.94.1.1 35807 1yovA 537 2.91e+01 2fhfA 1083 2.94e+01 1woqA 267 2.95e+01 c.55.1.10,c.55.1.10 109462,109463 1jf2A 195 3.07e+01 1ej3A a.39.1.5 62930 1i1iP 681 3.08e+01 1i1iP d.92.1.5 40297 1vmeA 410 3.11e+01 c.23.5.1,d.157.1.3 108893,108894 1q67A 231 3.12e+01 b.55.1.7 95960 1zt3A 80 3.21e+01 2biiA 424 3.25e+01 1m1fA 110 3.26e+01 b.34.6.2 78401 1kyqA 274 3.26e+01 c.2.1.11,e.37.1.1 73281,73282 1y71A 130 3.44e+01 1o5uA 101 3.45e+01 b.82.1.8 92518 1i3zA 103 3.45e+01 d.93.1.1 83667 2cn3A 737 3.47e+01 2bepA 159 3.52e+01 2frnA 278 3.53e+01 1df7A 159 3.55e+01 3dfr c.71.1.1 34885 1fvuB 125 3.67e+01 1ixxB d.169.1.1 42346 1e79D 482 3.69e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1vplA 256 3.79e+01 1j1qA 261 3.88e+01 d.165.1.1 90768 1cv8 174 3.89e+01 1cv8 d.3.1.1 37089 1xtoA 311 3.94e+01 2d7nA 93 3.98e+01 1zq4A 693 3.99e+01 1fzvA 132 4.00e+01 1vpfA g.17.1.1 60159 1w2lA 99 4.00e+01 1l6oA 95 4.01e+01 b.36.1.1 84534 1pxvA 183 4.30e+01 d.3.1.1 95301 1cyx 205 4.41e+01 1cyx b.6.1.2 23023 1lqsR 214 4.41e+01 b.1.2.1,b.1.2.1 74194,74195 2fp8A 322 4.47e+01 1zn6A 227 4.55e+01 1u2cA 246 4.56e+01 b.1.6.2,d.272.1.1 107610,107611 1h0hB 214 4.57e+01 d.58.1.5 76437 1itwA 741 4.62e+01 c.77.1.2 76793 1p5zB 263 4.68e+01 c.37.1.1 87815 1txkA 498 4.70e+01 b.1.18.2,b.30.5.9 107425,107426 2f0aA 98 4.74e+01 1cojA 212 4.77e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1y4hA 188 4.78e+01 1iuaA 83 4.86e+01 g.35.1.1 71438 1mvfD 82 4.95e+01 b.129.1.1 85143 1qwyA 291 4.95e+01 b.84.3.2 96509 1xbfA 140 4.96e+01 d.273.1.1 109538 1g5aA 628 5.35e+01 b.71.1.1,c.1.8.1 65152,65153 2cw9A 194 5.38e+01 1a62 130 5.40e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 2gjdA 157 5.49e+01 1z7gA 217 5.54e+01 1mxgA 435 5.56e+01 b.71.1.1,c.1.8.1 85193,85194 1um5H 217 5.56e+01 1s6lA 212 5.59e+01 1cyw 205 5.64e+01 1cyx b.6.1.2 23024 1o97C 264 5.65e+01 c.26.2.3 81232 2avtA 378 5.65e+01 1npsA 88 5.65e+01 1prs b.11.1.1 23622 1lvmA 229 5.68e+01 b.47.1.3 78243 2b7yA 182 5.74e+01 1qciA 262 5.79e+01 1qi7A d.165.1.1 42201 1qv1A 195 5.90e+01 a.39.1.5 96347 2ai4A 119 5.91e+01 1zgkA 308 5.97e+01 1a2pA 110 5.98e+01 1b20A d.1.1.2 36140 1u6dX 308 5.98e+01 2bzuA 181 5.99e+01 1o12A 376 5.99e+01 b.92.1.5,c.1.9.10 80758,80759 1cruA 454 6.06e+01 1c9uA b.68.2.1 27617 1ym0A 238 6.10e+01 1el4A 195 6.13e+01 1ej3A a.39.1.5 59453 2ck3D 482 6.13e+01 2gwdA 449 6.14e+01 1h6hA 143 6.30e+01 d.189.1.1 65681 2fymA 431 6.31e+01 1syxB 86 6.40e+01 1jtdB 273 6.44e+01 b.69.5.2 67265 1d2kA 392 6.54e+01 1d2kA c.1.8.5,d.26.3.1 29008,38442 2ftwA 521 6.54e+01 1fjgE 162 6.55e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1mugA 168 6.56e+01 1mugA c.18.1.2 31030 1wvqA 167 6.60e+01 2c4bA 143 6.61e+01 1rypH 205 6.61e+01 d.153.1.4 41876 1ift 263 6.75e+01 1mrj d.165.1.1 42211 1jmcA 246 6.90e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 1ojqA 212 6.92e+01 d.166.1.1 93146 1bqhG 129 6.93e+01 1cd8 b.1.1.1 19715 2pia 321 6.96e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1y1uA 585 7.03e+01 1ctt 294 7.24e+01 1ctt c.97.1.1,c.97.1.1 36022,36023 1w9iA 770 7.33e+01 1qcxA 359 7.39e+01 1qcxA b.80.1.2 28028 1ll7A 392 7.42e+01 c.1.8.5,d.26.3.1 78085,78086 1j4aA 333 7.50e+01 c.2.1.4,c.23.12.1 71502,71503 1zc3B 113 7.67e+01 1ql0A 241 7.75e+01 1qaeA d.4.1.2 37139 1nziA 159 7.75e+01 b.23.1.1,g.3.11.1 86449,86450 1bzyA 217 7.75e+01 1qk3A c.61.1.1 34071 1zc1A 208 7.80e+01 1ug1A 92 7.89e+01 b.34.2.1 99360 1yfuA 174 7.93e+01 2biqA 219 8.04e+01 1sqjA 789 8.09e+01 b.69.13.1,b.69.13.1 105918,105919 2fuvA 549 8.16e+01 1dynA 125 8.21e+01 1dynA b.55.1.1 26955 1esc 306 8.31e+01 1esc c.23.10.1 31334 1vf8A 377 8.33e+01 1vpkA 378 8.33e+01 1gh9A 71 8.39e+01 1gh9A g.41.6.1 45266 1jmxB 349 8.41e+01 b.69.2.2 66906 1ufkA 254 8.46e+01 c.66.1.39 99340 2gdqA 382 8.49e+01 1olzA 663 8.53e+01 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1gy7A 125 8.65e+01 d.17.4.2 70738 1e9lA 377 8.79e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 1uq5A 263 8.85e+01 d.165.1.1 99778 1llp 343 8.92e+01 1arv a.93.1.1 18578 1z3qA 200 8.94e+01 1ccr 112 8.95e+01 1ycc a.3.1.1 15877 1vkdA 338 8.97e+01 b.67.2.4 108644