# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1kagA 173 8.08e-01 c.37.1.2 72249 2anuA 255 1.36e+00 2cqnA 77 1.41e+00 1svfB 38 1.87e+00 1svfB h.3.2.1 45764 2bvpA 276 2.10e+00 1yuwA 554 2.49e+00 1tmy 120 2.78e+00 1dbwA c.23.1.1 31083 1m5tA 124 2.85e+00 c.23.1.1 78660 6ldh 330 2.92e+00 3ldh c.2.1.5,d.162.1.1 30161,42128 1mb3A 124 2.96e+00 c.23.1.1 78907 1ldm 329 2.99e+00 3ldh c.2.1.5,d.162.1.1 30160,42127 1z47A 355 3.23e+00 2b5dX 528 3.55e+00 1c9kB 180 3.64e+00 1c9kB c.37.1.11 32364 1u0sY 118 3.73e+00 c.23.1.1 107566 2b99A 156 3.92e+00 1cbuA 180 4.02e+00 1c9kB c.37.1.11 32360 1c9kA 180 4.08e+00 1c9kB c.37.1.11 32363 1nxmA 197 4.80e+00 b.82.1.1 86385 1srrA 124 5.03e+00 1dz3A c.23.1.1 31110 1jf8A 131 5.07e+00 c.44.1.1 66621 2fo1D 85 5.08e+00 1yh3A 256 6.44e+00 1bupA 386 6.83e+00 1ba1 c.55.1.1,c.55.1.1 33377,33378 1jfvA 131 7.02e+00 c.44.1.1 66654 1l2tA 235 7.05e+00 c.37.1.12 73514 1ba1 386 7.05e+00 1ba1 c.55.1.1,c.55.1.1 33387,33388 1kay 381 7.59e+00 1ba1 c.55.1.1,c.55.1.1 33385,33386 1ats 386 8.11e+00 1ba1 c.55.1.1,c.55.1.1 33423,33424 1atr 386 8.18e+00 1ba1 c.55.1.1,c.55.1.1 33421,33422 1hpm 386 8.64e+00 1ba1 c.55.1.1,c.55.1.1 33381,33382 1fobA 334 9.18e+00 c.1.8.3 83255 2fsp 124 9.33e+00 1dz3A c.23.1.1 31119 2eshA 118 9.48e+00 1ccwA 137 9.60e+00 1be1 c.23.6.1 31238 1bbn 133 1.02e+01 1rcb a.26.1.2 16861 1vp8A 201 1.10e+01 2d48A 129 1.17e+01 1mvoA 136 1.46e+01 c.23.1.1 79513 2f5gA 133 1.51e+01 2ethA 154 1.58e+01 2d28C 149 1.64e+01 1a04A 215 1.87e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 2feaA 236 1.98e+01 2d27A 149 2.01e+01 1e19A 314 2.08e+01 1b7bA c.73.1.1 34967 1qrvB 73 2.09e+01 a.21.1.1 16426 1itm 130 2.16e+01 1rcb a.26.1.2 16858 1vk9A 151 2.25e+01 c.139.1.1 108640 2scuB 388 2.28e+01 2scuB c.23.4.1,d.142.1.4 31141,41562 1w8iA 156 2.32e+01 1qrvA 73 2.36e+01 1cktA a.21.1.1 16425 1dr8B 344 2.37e+01 1cnzA c.77.1.1 35052 2fbiA 142 2.40e+01 1ydwA 362 2.42e+01 1m6pA 152 2.44e+01 1m6pA b.64.1.1 27519 1hma 73 2.48e+01 1cktA a.21.1.1 16427 1hziA 129 2.54e+01 1rcb a.26.1.2 61449 2int 129 2.59e+01 1rcb a.26.1.2 16855 1h54A 754 2.64e+01 a.102.1.4,b.30.5.3 60634,60635 1vgjA 184 2.69e+01 1ldnA 316 2.70e+01 1hyhA c.2.1.5,d.162.1.1 30166,42133 2eueA 279 2.70e+01 1ntyA 311 2.71e+01 a.87.1.1,b.55.1.1 103873,103874 1rcb 129 2.94e+01 1rcb a.26.1.2 16854 1a2oA 349 3.04e+01 1chd c.23.1.1,c.40.1.1 31120,32479 1c0dA 358 3.22e+01 1eceA c.1.8.3 28815 1wd5A 208 3.23e+01 1vdxA 184 3.26e+01 1h54B 754 3.49e+01 a.102.1.4,b.30.5.3 60636,60637 1n13B 113 3.58e+01 1n2sA 299 3.76e+01 c.2.1.2 79857 1mzjA 339 3.78e+01 c.95.1.2,c.95.1.2 79700,79701 1i50H 146 3.82e+01 b.40.4.8 61761 1vhmA 195 3.83e+01 d.110.2.1 100691 1pmi 440 3.86e+01 1pmi b.82.1.3 28114 1gh9A 71 3.89e+01 1gh9A g.41.6.1 45266 1s8nA 205 3.97e+01 c.23.1.1 105374 1p42A 270 4.03e+01 d.14.1.7,d.14.1.7 87754,87755 1lldA 319 4.15e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 9ldtA 332 4.25e+01 3ldh c.2.1.5,d.162.1.1 30154,42121 1eceA 358 4.33e+01 1eceA c.1.8.3 28813 1wovA 250 4.36e+01 1itvA 195 4.45e+01 b.66.1.1 76791 1g8sA 230 4.53e+01 c.66.1.3 90507 1ukxA 137 4.73e+01 d.20.1.3 107919 1eciA 37 4.78e+01 1eciA a.33.1.1 16999 1gyfA 62 4.89e+01 1gyfA d.76.1.1 39749 1u9lA 70 5.07e+01 a.60.4.2 107751 1vjoA 393 5.17e+01 c.67.1.3 100827 1nnwA 252 5.22e+01 d.159.1.5 80674 1ebfA 358 5.24e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1ak2 233 5.40e+01 1zin c.37.1.1,g.41.2.1 31894,45195 1a0sP 413 5.46e+01 1a0tP f.4.3.2 43797 1dbyA 107 5.49e+01 1thx c.47.1.1 32734 1qxyA 252 5.53e+01 d.127.1.1 96565 1e6cA 173 5.67e+01 1shkA c.37.1.2 59296 1v71A 323 5.67e+01 2awaA 390 5.69e+01 1squA 155 5.73e+01 d.252.1.1 98971 1ufiA 64 5.76e+01 a.30.4.1 99336 2au3A 407 5.80e+01 2ffcA 353 5.91e+01 1zanL 214 5.92e+01 1yvkA 163 5.97e+01 2gclA 261 6.01e+01 1z5zA 271 6.34e+01 1uv4A 293 6.35e+01 1k34A 68 6.35e+01 h.3.2.1 68093 2gqrA 237 6.37e+01 1t8tA 271 6.38e+01 c.37.1.5 106685 1fbnA 230 6.48e+01 1fbnA c.66.1.3 34181 1fzqA 181 6.55e+01 1hurA c.37.1.8 32060 1jmxB 349 6.57e+01 b.69.2.2 66906 1ltzA 297 6.65e+01 d.178.1.1 74254 1szt 68 6.90e+01 1aikN h.3.2.1 45725 1a0tP 413 6.93e+01 1a0tP f.4.3.2 43794 1pzgA 331 7.05e+01 c.2.1.5,d.162.1.1 95425,95426 1wh8A 111 7.13e+01 2ct8A 497 7.16e+01 1ibcA 194 7.32e+01 1pauA c.17.1.1 30997 1r4pB 70 7.40e+01 b.40.2.1 97026 2fbwC 141 7.57e+01 1b0uA 262 7.70e+01 1b0uA c.37.1.12 32370 2f4nA 273 7.79e+01 1kn0A 212 7.80e+01 d.50.1.3 77444 2bosA 68 7.85e+01 2bosA b.40.2.1 25025 1xebA 150 7.96e+01 2bf5A 98 7.99e+01 1keoA 154 8.01e+01 b.64.1.1 68534 1syxB 86 8.07e+01 1vzwA 244 8.22e+01 1wjvA 79 8.29e+01 1wz9A 375 8.34e+01 2fyxA 143 8.51e+01 1gv4A 528 8.61e+01 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 1l5zA 155 8.71e+01 c.23.1.1 77722 1po5A 476 8.82e+01 a.104.1.1 94963 1o5kA 306 8.86e+01 c.1.10.1 92504 1gmmA 133 8.87e+01 b.18.1.10 65314