# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2anuA 255 6.23e-01 2cqnA 77 9.85e-01 1svfB 38 1.06e+00 1svfB h.3.2.1 45764 1mb3A 124 1.10e+00 c.23.1.1 78907 2fo1D 85 1.24e+00 1tmy 120 1.28e+00 1dbwA c.23.1.1 31083 1u0sY 118 1.70e+00 c.23.1.1 107566 2b99A 156 1.72e+00 6ldh 330 2.32e+00 3ldh c.2.1.5,d.162.1.1 30161,42128 1c9kA 180 2.53e+00 1c9kB c.37.1.11 32363 1srrA 124 2.58e+00 1dz3A c.23.1.1 31110 1ccwA 137 3.24e+00 1be1 c.23.6.1 31238 1jf8A 131 3.48e+00 c.44.1.1 66621 1yh3A 256 4.27e+00 1bupA 386 4.97e+00 1ba1 c.55.1.1,c.55.1.1 33377,33378 1z47A 355 5.24e+00 1vp8A 201 5.40e+00 2b5dX 528 6.39e+00 1mvoA 136 7.26e+00 c.23.1.1 79513 1nxmA 197 7.58e+00 b.82.1.1 86385 1l2tA 235 8.71e+00 c.37.1.12 73514 2d48A 129 8.77e+00 2f5gA 133 9.22e+00 1vk9A 151 9.75e+00 c.139.1.1 108640 2ethA 154 9.90e+00 2fbiA 142 1.06e+01 1w8iA 156 1.17e+01 1fobA 334 1.17e+01 c.1.8.3 83255 2d28C 149 1.25e+01 2fbwC 141 1.43e+01 1qrvA 73 1.45e+01 1cktA a.21.1.1 16425 1ydwA 362 1.57e+01 1hziA 129 1.58e+01 1rcb a.26.1.2 61449 1s8nA 205 1.60e+01 c.23.1.1 105374 1m48A 133 1.73e+01 a.26.1.2 74443 1h54A 754 1.75e+01 a.102.1.4,b.30.5.3 60634,60635 1n13B 113 1.90e+01 1n2sA 299 2.05e+01 c.2.1.2 79857 2feaA 236 2.19e+01 1zanL 214 2.28e+01 1vgjA 184 2.34e+01 1m6pA 152 2.42e+01 1m6pA b.64.1.1 27519 1vzwA 244 2.71e+01 1om4A 422 2.77e+01 d.174.1.1 87067 1eciA 37 2.81e+01 1eciA a.33.1.1 16999 1ufiA 64 2.82e+01 a.30.4.1 99336 1e19A 314 2.86e+01 1b7bA c.73.1.1 34967 1wovA 250 2.87e+01 1wd5A 208 2.87e+01 1gh9A 71 2.97e+01 1gh9A g.41.6.1 45266 1pmi 440 3.00e+01 1pmi b.82.1.3 28114 1z2lA 423 3.00e+01 2fi9A 128 3.24e+01 1squA 155 3.26e+01 d.252.1.1 98971 1fzqA 181 3.28e+01 1hurA c.37.1.8 32060 1g8sA 230 3.31e+01 c.66.1.3 90507 1ebfA 358 3.36e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1itvA 195 3.42e+01 b.66.1.1 76791 1u5tA 233 3.52e+01 a.4.5.54,a.4.5.54 107684,107685 1lldA 319 3.56e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1h2cA 140 3.72e+01 b.31.1.1 83462 1t8tA 271 3.73e+01 c.37.1.5 106685 1nnwA 252 3.74e+01 d.159.1.5 80674 1ltzA 297 3.83e+01 d.178.1.1 74254 1ntyA 311 3.85e+01 a.87.1.1,b.55.1.1 103873,103874 1u0sA 86 3.88e+01 d.58.24.1 107565 1xebA 150 3.90e+01 1twfH 146 4.09e+01 1pm3A 78 4.17e+01 b.41.1.2 94889 1kqpA 271 4.23e+01 c.26.2.1 72883 1v71A 323 4.24e+01 1z5zA 271 4.25e+01 1a0tP 413 4.28e+01 1a0tP f.4.3.2 43794 1nni1 174 4.38e+01 1gheA 177 4.52e+01 d.108.1.1 76222 1po5A 476 4.59e+01 a.104.1.1 94963 2au3A 407 4.62e+01 1qc7A 101 4.74e+01 1qc7A a.118.14.1 18456 1u9lA 70 4.76e+01 a.60.4.2 107751 1wjvA 79 4.77e+01 2c31A 568 4.77e+01 2bf5A 98 4.77e+01 2gclA 261 4.89e+01 1yavA 159 4.94e+01 1qxyA 252 4.95e+01 d.127.1.1 96565 1pzgA 331 4.97e+01 c.2.1.5,d.162.1.1 95425,95426 1xsvA 113 4.98e+01 1j5pA 253 5.04e+01 d.81.1.3,c.2.1.3 71577,83092 1eceA 358 5.10e+01 1eceA c.1.8.3 28813 2fa8A 105 5.12e+01 2fyxA 143 5.34e+01 1q9rA 219 5.35e+01 b.1.1.1,b.1.1.2 96305,96306 1p42A 270 5.41e+01 d.14.1.7,d.14.1.7 87754,87755 1r4pB 70 5.47e+01 b.40.2.1 97026 1meoA 209 5.59e+01 c.65.1.1 79035 1wudA 89 5.63e+01 1cnzA 363 5.82e+01 1cnzA c.77.1.1 35061 1xb4A 202 5.89e+01 1sc3A 178 5.89e+01 c.17.1.1 105416 1ugpA 203 5.93e+01 d.149.1.1 107831 1syxB 86 5.97e+01 1vpqA 273 6.00e+01 1drw 273 6.16e+01 1drw c.2.1.3,d.81.1.3 30057,39972 1lnsA 763 6.17e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1ohzB 60 6.21e+01 a.139.1.1 93044 1b0uA 262 6.27e+01 1b0uA c.37.1.12 32370 1ghhA 81 6.32e+01 1ghhA d.57.1.1 38940 1w4xA 542 6.37e+01 c.3.1.5,c.3.1.5 109171,109172 1uv4A 293 6.43e+01 1m6iA 493 6.55e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2gqrA 237 6.61e+01 1qp6A 35 6.63e+01 1qp6A k.16.1.1 46443 1lw7A 365 6.65e+01 c.26.1.3,c.37.1.1 74295,74296 1gsmA 210 6.68e+01 b.1.1.4,b.1.1.4 65535,65536 1v9yA 167 6.73e+01 d.110.3.2 108454 1yakA 263 6.80e+01 1tzjA 338 7.01e+01 1cunA 213 7.16e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 1jmxB 349 7.18e+01 b.69.2.2 66906 1q6oA 216 7.25e+01 c.1.2.3 95986 2ffcA 353 7.28e+01 1o8xA 146 7.36e+01 c.47.1.10 86681 1wz9A 375 7.45e+01 1josA 128 7.49e+01 d.52.7.1 84191 1o5kA 306 7.55e+01 c.1.10.1 92504 1k4zA 159 7.68e+01 b.80.5.1 72070 1u04A 771 7.69e+01 b.34.14.1,c.55.3.10 107539,107540 1y1oA 203 7.71e+01 1us5A 314 7.71e+01 c.94.1.1 99856 1vqoO 116 7.82e+01 1k66A 149 7.89e+01 c.23.1.1 90941 1s98A 107 7.90e+01 b.124.1.1 105377 1zpvA 91 8.01e+01 2b7kA 200 8.04e+01 2a1xA 308 8.06e+01 1lj9A 144 8.10e+01 a.4.5.28 78035 2bbkL 125 8.16e+01 2bbkL g.21.1.1 44882 1zr6A 503 8.38e+01 1t6sA 162 8.55e+01 2f4nA 273 8.59e+01 1yp2A 451 8.59e+01 2fcr 173 8.60e+01 1rcf c.23.5.1 31151 1u2mA 143 8.68e+01 f.48.1.1 107612 2cz1A 206 8.69e+01 1vyrA 364 8.69e+01 c.1.4.1 108906 1xteA 154 8.72e+01 1gx5A 536 8.82e+01 e.8.1.4 70682 1z4eA 153 8.84e+01 1vmoA 163 8.97e+01 1vmoA b.77.1.1 27974 1lyvA 306 8.99e+01 c.45.1.2 74348