# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2b99A 156 1.32e-01 1fobA 334 2.00e-01 c.1.8.3 83255 1l2tA 235 2.77e-01 c.37.1.12 73514 1z47A 355 3.73e-01 1vr3A 191 8.30e-01 1obdA 306 9.86e-01 d.143.1.1 86767 1mb3A 124 1.10e+00 c.23.1.1 78907 1c9kA 180 1.14e+00 1c9kB c.37.1.11 32363 1sg4A 260 1.19e+00 1e6uA 321 1.46e+00 1bsvA c.2.1.2 29805 1nxmA 197 1.63e+00 b.82.1.1 86385 1w44A 331 2.10e+00 1jf8A 131 2.13e+00 c.44.1.1 66621 1xubA 298 2.26e+00 2gqrA 237 2.51e+00 1m6iA 493 2.55e+00 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1z2lA 423 2.57e+00 1srrA 124 2.67e+00 1dz3A c.23.1.1 31110 1f28A 297 2.81e+00 1bkpA d.117.1.1 59608 1u94A 356 3.02e+00 c.37.1.11,d.48.1.1 107743,107744 1vyrA 364 3.16e+00 c.1.4.1 108906 1b0uA 262 3.46e+00 1b0uA c.37.1.12 32370 1qsmA 152 3.51e+00 1qsmA d.108.1.1 40808 1q7zA 566 3.57e+00 c.1.21.2,c.1.26.1 96090,96091 1ig3A 263 3.91e+00 1ig3A b.82.6.1,c.100.1.1 62358,62359 2fp8A 322 4.26e+00 1oxxK 353 4.61e+00 b.40.6.3,c.37.1.12 93715,93716 1u0sY 118 4.68e+00 c.23.1.1 107566 1tmy 120 4.81e+00 1dbwA c.23.1.1 31083 1zn6A 227 4.88e+00 1gvhA 396 4.98e+00 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1vb3A 428 5.40e+00 1w78A 422 5.47e+00 2ge3A 170 5.72e+00 1i39A 225 6.09e+00 1ekeA c.55.3.1 61585 1hp1A 516 6.29e+00 d.114.1.1,d.159.1.2 70976,70977 1m0wA 491 6.39e+00 c.30.1.4,d.142.1.6 78363,78364 1ekeA 230 6.65e+00 1ekeA c.55.3.1 33572 2frnA 278 6.70e+00 1xp8A 366 6.80e+00 1ojqA 212 6.81e+00 d.166.1.1 93146 1cr1A 296 6.81e+00 1cr1A c.37.1.11 32286 1ivyA 452 6.94e+00 1ivyA c.69.1.5 34654 1wleA 501 6.99e+00 1ek0A 170 7.11e+00 1ctqA c.37.1.8 32076 2gtrA 261 7.32e+00 1m3uA 264 8.12e+00 c.1.12.8 84784 2ey4C 82 8.17e+00 1pea 385 8.48e+00 1pea c.93.1.1 35662 1kutA 230 8.67e+00 d.143.1.1 73017 1v33A 366 8.93e+00 d.264.1.1 100278 1vjoA 393 9.15e+00 c.67.1.3 100827 1fzqA 181 9.38e+00 1hurA c.37.1.8 32060 1g6hA 257 9.52e+00 1gajA c.37.1.12 60318 1z3eA 132 9.58e+00 1xttA 216 9.65e+00 1j8mF 297 9.72e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1ixcA 294 9.90e+00 a.4.5.37,c.94.1.1 83764,83765 1n2sA 299 1.00e+01 c.2.1.2 79857 1t0fA 276 1.00e+01 1bg2 325 1.03e+01 1bg2 c.37.1.9 32189 1f9vA 347 1.06e+01 1bg2 c.37.1.9 59745 2czdA 208 1.10e+01 2f5tX 233 1.11e+01 2c31A 568 1.13e+01 2ethA 154 1.14e+01 1z5yE 149 1.14e+01 1g291 372 1.15e+01 1g291 1jmvA 141 1.16e+01 c.26.2.4 66897 2azpA 318 1.17e+01 1g7sA 594 1.17e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1lnsA 763 1.22e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1woqA 267 1.23e+01 c.55.1.10,c.55.1.10 109462,109463 1bywA 110 1.33e+01 1bywA d.110.3.6 40912 1f89A 291 1.35e+01 d.160.1.1 64988 2aa4A 289 1.37e+01 1yavA 159 1.40e+01 1v60A 123 1.41e+01 2fexA 188 1.47e+01 2bepA 159 1.50e+01 1r0rE 274 1.51e+01 c.41.1.1 96735 1e5dA 402 1.56e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1k66A 149 1.58e+01 c.23.1.1 90941 1uluA 261 1.62e+01 1ve3A 227 1.66e+01 1w2xA 758 1.68e+01 c.14.1.4,c.14.1.4 109134,109135 1r8gA 372 1.69e+01 d.128.1.3 104845 1c96A 753 1.72e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1ltzA 297 1.72e+01 d.178.1.1 74254 1qkkA 155 1.74e+01 1dbwA c.23.1.1 31104 1atg 231 1.75e+01 1atg c.94.1.1 35834 1qxyA 252 1.76e+01 d.127.1.1 96565 1m98A 317 1.79e+01 a.175.1.1,d.17.4.6 78866,78867 1o8xA 146 1.82e+01 c.47.1.10 86681 1o0iA 138 1.83e+01 d.38.1.5 86532 1thm 279 1.83e+01 1gci c.41.1.1 32544 1xebA 150 1.83e+01 1n82A 331 1.88e+01 c.1.8.3 91703 7odcA 424 1.94e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1n0wA 243 1.96e+01 c.37.1.11 79772 1bqcA 302 1.99e+01 1bqcA c.1.8.3 28831 1v02A 565 1.99e+01 c.1.8.4 108194 1jbkA 195 2.00e+01 c.37.1.20 71631 1xfsA 178 2.04e+01 d.129.3.5 109589 1e19A 314 2.11e+01 1b7bA c.73.1.1 34967 1qipA 183 2.14e+01 1qipA d.32.1.1 38470 1duvG 333 2.14e+01 1othA c.78.1.1,c.78.1.1 35228,35229 2bbsA 290 2.15e+01 2ffcA 353 2.16e+01 1wb4A 297 2.18e+01 2d69A 430 2.19e+01 1acf 125 2.19e+01 3nul d.110.1.1 40882 1zhvA 134 2.22e+01 1io2A 213 2.24e+01 1ekeA c.55.3.1 62612 1ypfA 336 2.25e+01 1ws0A 156 2.25e+01 1u2eA 289 2.27e+01 1w5qA 337 2.27e+01 1xmxA 385 2.33e+01 1nhkL 144 2.34e+01 1npk d.58.6.1 39142 2c0nA 203 2.34e+01 1dozA 309 2.37e+01 1ak1 c.92.1.1 35592 1bolA 222 2.38e+01 1bolA d.124.1.1 41120 1wqaA 455 2.38e+01 1dbiA 280 2.40e+01 1gci c.41.1.1 32543 1s57A 153 2.43e+01 1vf8A 377 2.47e+01 1w5fA 353 2.47e+01 1vp8A 201 2.48e+01 1kblA 873 2.48e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1y10A 407 2.50e+01 1pm3A 78 2.55e+01 b.41.1.2 94889 2ae2A 260 2.55e+01 1bdb c.2.1.2 29945 1eo1A 124 2.59e+01 1eo1A c.55.5.1 33739 1d5tA 433 2.62e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 1uyrA 737 2.63e+01 c.14.1.4,c.14.1.4 100188,100189 1es9A 232 2.65e+01 1wab c.23.10.3 31340 2az4A 429 2.68e+01 1z90A 469 2.68e+01 1wy5A 317 2.69e+01 1rxdA 159 2.71e+01 1fjgE 162 2.75e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1h3fA 432 2.76e+01 c.26.1.1,d.66.1.4 76631,76632 1gheA 177 2.76e+01 d.108.1.1 76222 2fyxA 143 2.77e+01 1j9lA 247 2.78e+01 c.106.1.1 62762 1ig8A 486 2.78e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1x8hA 228 2.80e+01 1vpqA 273 2.82e+01 1x8gA 227 2.83e+01 1u4gA 301 2.90e+01 d.92.1.2 107670 1u2cA 246 2.90e+01 b.1.6.2,d.272.1.1 107610,107611 2gkeA 274 2.92e+01 1cnzA 363 2.95e+01 1cnzA c.77.1.1 35061 2f5gA 133 3.01e+01 1z41A 338 3.04e+01 1ma3A 253 3.05e+01 c.31.1.5 78883 1c30B 382 3.05e+01 c.8.3.1,c.23.16.1 30736,31413 2grrA 161 3.12e+01 1vfvA 366 3.17e+01 c.37.1.9 108592 1g5aA 628 3.22e+01 b.71.1.1,c.1.8.1 65152,65153 1u9aA 160 3.25e+01 1u9aA d.20.1.1 38333 1ne2A 200 3.26e+01 c.66.1.32 85586 1z7gA 217 3.30e+01 1jflA 228 3.32e+01 c.78.2.1,c.78.2.1 71656,71657 1ff9A 450 3.33e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1lvoA 302 3.36e+01 b.47.1.4 74284 1vqoH 171 3.37e+01 2cwxA 430 3.49e+01 1hjsA 332 3.57e+01 c.1.8.3 83492 2a1xA 308 3.59e+01 1mvoA 136 3.61e+01 c.23.1.1 79513 1vm0A 130 3.65e+01 d.68.6.2 108873 1vplA 256 3.65e+01 1amf 233 3.66e+01 1wod c.94.1.1 35833 1ayoA 130 3.72e+01 1ayoA b.2.4.1 22431 2f4nA 273 3.74e+01 1s8nA 205 3.75e+01 c.23.1.1 105374 1w0dA 337 3.76e+01 1xyzA 347 3.77e+01 1taxA c.1.8.3 28804 1t8tA 271 3.77e+01 c.37.1.5 106685 1nu7D 282 3.79e+01 a.8.6.1,a.8.6.1 92191,92192 1bg4 302 3.80e+01 1taxA c.1.8.3 28806 1zgzA 122 3.83e+01 1gegA 256 3.83e+01 1ybvA c.2.1.2 29888 1z4eA 153 3.85e+01 1s95A 333 3.88e+01 d.159.1.3 105375 1ydwA 362 3.89e+01 1vk9A 151 3.93e+01 c.139.1.1 108640 1zp4A 304 3.94e+01 1yd9A 193 3.95e+01 1n2eA 300 3.96e+01 c.26.1.4 85268 1a9xB 379 4.00e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 3nul 130 4.01e+01 3nul d.110.1.1 40891 1n13B 113 4.02e+01 7a3hA 303 4.03e+01 7a3hA c.1.8.3 28817 1vetA 124 4.08e+01 d.110.7.1 108553 1dq3A 454 4.10e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1vjeA 166 4.13e+01 d.185.1.2 100807 1nzjA 298 4.14e+01 c.26.1.1 92377 1c44A 123 4.20e+01 1qndA d.106.1.1 40795 2d0oA 610 4.21e+01 1d3gA 367 4.25e+01 1d3gA c.1.4.1 28600 1ihoA 283 4.27e+01 1ihoA c.26.1.4 62390 1izcA 339 4.27e+01 c.1.12.5 83838 1q6oA 216 4.31e+01 c.1.2.3 95986 2b61A 377 4.31e+01 1vc3B 97 4.36e+01 2bhuA 602 4.36e+01 1rlhA 173 4.47e+01 d.256.1.1 97646 1llnA 262 4.49e+01 d.165.1.1 84625 1ufwA 95 4.54e+01 d.58.7.1 99358 2dkaA 544 4.56e+01 1xfiA 367 4.57e+01 e.50.1.1 109584 1uv4A 293 4.61e+01 1v4vA 376 4.61e+01 c.87.1.3 100313 1nnxA 109 4.61e+01 b.40.10.1 92013 1auk 489 4.65e+01 1auk c.76.1.2 35030 1edqA 540 4.67e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1vdmA 153 4.68e+01 1fvuB 125 4.76e+01 1ixxB d.169.1.1 42346 1jksA 294 4.77e+01 d.144.1.7 71710 1z2iA 358 4.78e+01 1juhA 350 4.83e+01 b.82.1.5 71884 1wg8A 285 4.84e+01 2g76A 335 4.88e+01 1yliA 153 4.88e+01 1p9yA 121 4.88e+01 d.241.2.1 94402 1zy9A 564 4.89e+01 1zr6A 503 4.90e+01 1icfI 65 4.91e+01 1icfI g.28.1.1 44958 1tqzA 133 4.92e+01 1nq6A 302 4.95e+01 c.1.8.3 92046 1svfB 38 4.95e+01 1svfB h.3.2.1 45764 2gdjA 264 4.98e+01 1jatA 155 5.01e+01 1u9aA d.20.1.1 62818 1ek6A 348 5.06e+01 1xel c.2.1.2 29800 1vp2A 208 5.08e+01 1nnwA 252 5.10e+01 d.159.1.5 80674 1ispA 181 5.14e+01 c.69.1.18 76778 2b06A 155 5.18e+01 1s7iA 124 5.22e+01 d.58.4.9 105353 1nu0A 138 5.22e+01 c.55.3.8 92165 1o98A 511 5.25e+01 c.105.1.1,c.76.1.3 86684,86685 1ep3A 311 5.31e+01 2dorA c.1.4.1 28597 1dbwA 126 5.34e+01 1dbwA c.23.1.1 31095 2bllA 345 5.39e+01 1d2nA 272 5.58e+01 1d2nA c.37.1.20 32428 1wb0A 445 5.59e+01 1eiwA 111 5.61e+01 1eiwA c.23.3.1 31130 1zmtA 254 5.61e+01 1qwgA 251 5.63e+01 c.1.27.1 96473 2as0A 396 5.63e+01 1rhcA 330 5.67e+01 c.1.16.3 97468 1s2wA 295 5.71e+01 c.1.12.7 98407 1xqwA 293 5.73e+01 1gveA 327 5.74e+01 c.1.7.1 70597 1k77A 260 5.75e+01 c.1.15.5 72096 1ig0A 319 5.79e+01 1ig0A b.82.6.1,c.100.1.1 62354,62355 1ea7A 310 5.83e+01 c.41.1.1 70086 2gshA 414 5.87e+01 1iukA 140 5.93e+01 c.2.1.8 83712 2a84A 300 6.01e+01 1mtzA 293 6.04e+01 c.69.1.7 79467 1vr5A 547 6.04e+01 1pwxA 254 6.10e+01 c.2.1.2 95262 2av4A 162 6.11e+01 1lehA 364 6.12e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1ri6A 343 6.12e+01 b.69.11.1 97503 1xk7A 408 6.13e+01 1n57A 291 6.15e+01 c.23.16.2 85328 1vk6A 269 6.17e+01 d.113.1.4,d.113.1.4 100851,100852 2bryA 497 6.21e+01 2bo4A 397 6.23e+01 1rw7A 243 6.23e+01 c.23.16.2 97963 2b0vA 153 6.29e+01 1w9yA 319 6.29e+01 2c07A 285 6.31e+01 1anf 370 6.34e+01 4mbp c.94.1.1 35776 1gqzA 274 6.35e+01 d.21.1.1,d.21.1.1 83311,83312 1ytvA 366 6.40e+01 1qv9A 283 6.41e+01 c.127.1.1 96356 2amxA 376 6.42e+01 1m0kA 262 6.43e+01 f.13.1.1 78344 1wvhA 134 6.48e+01 1nbwA 607 6.48e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1ursA 402 6.49e+01 c.94.1.1 99833 1z7aA 308 6.51e+01 1m7gA 211 6.51e+01 c.37.1.4 78724 1ufkA 254 6.53e+01 c.66.1.39 99340 2fbiA 142 6.54e+01 1s7kA 182 6.54e+01 1lv7A 257 6.55e+01 c.37.1.20 78232 1mpp 361 6.56e+01 2rmpA b.50.1.2 26856 1jtdB 273 6.56e+01 b.69.5.2 67265 2anuA 255 6.60e+01 1k1eA 180 6.60e+01 c.108.1.5 67995 1c9oA 66 6.61e+01 1mjc b.40.4.5 25325 1gbg 214 6.62e+01 1axkA b.29.1.2 24171 1o69A 394 6.70e+01 c.67.1.4 92560 2d00A 109 6.70e+01 1vjpA 394 6.78e+01 c.2.1.3,d.81.1.3 100828,100829 1qhdA 398 6.86e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1l8nA 679 6.86e+01 c.1.8.10,d.92.2.2 84564,84565 1vqoQ 96 6.87e+01 2gr8A 99 6.90e+01 1wq3A 322 6.92e+01 1nziA 159 6.94e+01 b.23.1.1,g.3.11.1 86449,86450 1b25A 619 6.96e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1odzA 386 6.97e+01 c.1.8.3 86889 1w1oA 534 6.97e+01 d.58.32.4,d.145.1.1 109071,109072 1hqz1 141 7.03e+01 2ayh 214 7.07e+01 1axkA b.29.1.2 24172 2fgeA 995 7.10e+01 1ne9A 335 7.13e+01 d.108.1.4,d.108.1.4 91839,91840 1uzkA 162 7.18e+01 1kngA 156 7.18e+01 c.47.1.10 72777 2citA 282 7.20e+01 1lw7A 365 7.21e+01 c.26.1.3,c.37.1.1 74295,74296 1l5xA 280 7.24e+01 c.106.1.1 77718 1uwsA 489 7.26e+01 c.1.8.4 108073 1w8oA 601 7.28e+01 2pia 321 7.33e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1yrbA 262 7.36e+01 1sqsA 242 7.39e+01 c.23.5.5 98968 1mugA 168 7.45e+01 1mugA c.18.1.2 31030 1qvzA 237 7.47e+01 c.23.16.2 96453 1o58A 303 7.62e+01 c.79.1.1 92491 1xg8A 111 7.66e+01 1f9zA 135 7.67e+01 1qipA d.32.1.1 38484 1dysA 348 7.72e+01 1bvwA c.6.1.1 30669 1xv5A 401 7.76e+01 1r2qA 170 7.79e+01 c.37.1.8 96874 1fthA 122 7.81e+01 d.150.1.2 60028 1v2bA 177 7.89e+01 d.107.1.2 108279 1lcyA 325 7.89e+01 b.36.1.4,b.47.1.1 73834,73835 2fo1D 85 7.91e+01 1kyqA 274 7.92e+01 c.2.1.11,e.37.1.1 73281,73282 1rvgA 305 7.93e+01 c.1.10.2 97920 1gteA 1025 7.95e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1d3vA 323 8.03e+01 1d3vA c.42.1.1 32559 1ei6A 406 8.06e+01 c.76.1.4 90443 1o4vA 183 8.14e+01 c.23.8.1 86628 2ghsA 326 8.18e+01 1y0gA 191 8.28e+01 2cqnA 77 8.31e+01 1qj4A 257 8.31e+01 1qj4A c.69.1.20 34796 1y8tA 324 8.31e+01 1h6dA 433 8.31e+01 c.2.1.3,d.81.1.5 65656,65657 1zmdA 474 8.35e+01 2ai4A 119 8.37e+01 2aq5A 402 8.37e+01 1szoA 257 8.37e+01 c.14.1.3 106164 1o66A 275 8.38e+01 c.1.12.8 92547 1iooA 196 8.39e+01 d.124.1.1 71250 1wyzA 242 8.41e+01 1efvB 255 8.41e+01 1efvB c.26.2.3 31634 1uh5A 329 8.42e+01 c.2.1.2 107840 1u8fO 335 8.43e+01 1o97C 264 8.43e+01 c.26.2.3 81232 1knvA 293 8.50e+01 c.52.1.7 68707 1jx4A 352 8.50e+01 d.240.1.1,e.8.1.7 90378,90379 1nkoA 132 8.51e+01 b.1.1.1 85829 1wohA 305 8.55e+01 c.42.1.1 109446 2awpA 198 8.56e+01 1ugpA 203 8.57e+01 d.149.1.1 107831 1yoxA 250 8.60e+01 1nni1 174 8.60e+01 2cvhA 220 8.61e+01 1syxB 86 8.65e+01 1i60A 278 8.73e+01 c.1.15.4 71118 1xtzA 264 8.79e+01 1ur1A 378 8.79e+01 c.1.8.3 99804 1gmlA 178 8.80e+01 c.8.5.2 70273 2a5hA 416 8.82e+01 2b8eA 273 8.82e+01 1pj5A 830 8.90e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1u9tA 354 8.95e+01