# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fo1D 85 9.29e-01 1svfB 38 1.78e+00 1svfB h.3.2.1 45764 1tmy 120 2.94e+00 1dbwA c.23.1.1 31083 1qrvA 73 3.20e+00 1cktA a.21.1.1 16425 1mvoA 136 3.97e+00 c.23.1.1 79513 1u0sY 118 4.11e+00 c.23.1.1 107566 1ccwA 137 4.13e+00 1be1 c.23.6.1 31238 1srrA 124 4.42e+00 1dz3A c.23.1.1 31110 6ldh 330 5.00e+00 3ldh c.2.1.5,d.162.1.1 30161,42128 2d28C 149 5.11e+00 1mb3A 124 5.90e+00 c.23.1.1 78907 1u5tA 233 6.85e+00 a.4.5.54,a.4.5.54 107684,107685 1o58A 303 6.86e+00 c.79.1.1 92491 1o8vA 134 7.18e+00 b.60.1.2 86680 1t6sA 162 9.68e+00 1xdnA 277 1.03e+01 2cqnA 77 1.05e+01 2cz1B 212 1.07e+01 1jf8A 131 1.09e+01 c.44.1.1 66621 1yuwA 554 1.22e+01 2b5dX 528 1.28e+01 1cnzA 363 1.32e+01 1cnzA c.77.1.1 35061 1v71A 323 1.33e+01 2d27A 149 1.37e+01 1bx7 55 1.37e+01 1bx7 g.3.15.1 44355 1te0A 318 1.43e+01 1o54A 277 1.47e+01 c.66.1.13 92482 2ahjB 212 1.62e+01 2ahjB b.34.4.4 24599 1bylA 125 1.69e+01 1bylA d.32.1.2 38495 2btiA 63 1.69e+01 1qp6A 35 1.69e+01 1qp6A k.16.1.1 46443 1ehyA 294 1.75e+01 1ehyA c.69.1.11 34693 1w8iA 156 1.77e+01 2frnA 278 1.81e+01 1xniA 118 1.82e+01 1m6pA 152 1.92e+01 1m6pA b.64.1.1 27519 1s72E 178 1.92e+01 d.141.1.1,d.141.1.1 105323,105324 1vk9A 151 2.00e+01 c.139.1.1 108640 1kutA 230 2.02e+01 d.143.1.1 73017 1vqoE 178 2.14e+01 1jj2E 177 2.16e+01 1ffk1 d.141.1.1,d.141.1.1 63089,63090 1vp8A 201 2.26e+01 1zglP 249 2.34e+01 1m6kA 251 2.44e+01 e.3.1.1 78695 1oqcA 125 2.50e+01 a.24.15.1 87264 1pmi 440 2.55e+01 1pmi b.82.1.3 28114 1bupA 386 2.55e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 2fbwC 141 2.57e+01 1r53A 382 2.65e+01 d.258.1.1 97063 1y6iA 233 2.67e+01 1zx0A 236 2.71e+01 1xclA 235 2.73e+01 1s72H 171 2.77e+01 d.41.4.1 105327 1kay 381 2.84e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 1r7jA 95 2.86e+01 a.4.5.49 104836 2amxA 376 3.00e+01 2bf5A 98 3.02e+01 2a1xA 308 3.09e+01 1vqoH 171 3.41e+01 1ssfA 156 3.43e+01 b.34.9.1,b.34.9.1 105982,105983 1yduA 170 3.44e+01 1yh3A 256 3.73e+01 2anuA 255 3.82e+01 1woqA 267 3.82e+01 c.55.1.10,c.55.1.10 109462,109463 2ethA 154 3.90e+01 1mzbA 136 3.93e+01 a.4.5.42 91497 2b7kA 200 3.95e+01 1g71A 347 3.98e+01 1g71A d.264.1.1 43268 2b99A 156 4.02e+01 1k4tA 592 4.07e+01 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 1wzuA 300 4.08e+01 2occE 109 4.12e+01 2occE a.118.11.1 19224 1msc 129 4.12e+01 1msc d.85.1.1 40039 2eshA 118 4.21e+01 1c7nA 399 4.24e+01 1d2fA c.67.1.3 34413 1kcxA 518 4.38e+01 b.92.1.3,c.1.9.6 90953,90954 1ws0A 156 4.44e+01 2fp4B 395 4.46e+01 1zpvA 91 4.63e+01 1a04A 215 4.67e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 1eudB 396 4.81e+01 2scuB c.23.4.1,d.142.1.4 31150,41571 1w2wA 211 4.83e+01 c.124.1.5 109130 1g99A 408 4.95e+01 1g99A c.55.1.2,c.55.1.2 33457,33458 1h54A 754 5.08e+01 a.102.1.4,b.30.5.3 60634,60635 1lqsR 214 5.21e+01 b.1.2.1,b.1.2.1 74194,74195 1s8nA 205 5.23e+01 c.23.1.1 105374 1ysqA 193 5.33e+01 1v54E 109 5.36e+01 a.118.11.1 100326 1tqzA 133 5.55e+01 1rwxA 178 5.56e+01 1h8gA 95 5.72e+01 b.109.1.1 65735 1sc3A 178 5.75e+01 c.17.1.1 105416 1xfxA 777 5.75e+01 1r3sA 367 5.89e+01 c.1.22.1 96963 1i50H 146 5.92e+01 b.40.4.8 61761 1wovA 250 5.99e+01 1vzwA 244 6.05e+01 1u2fA 90 6.12e+01 1u2fA d.58.7.1 39168 1u9lA 70 6.14e+01 a.60.4.2 107751 1whsB 153 6.15e+01 1whtB 1whtB 153 6.30e+01 1whtB 1iznB 277 6.30e+01 e.43.1.2 83848 1fobA 334 6.36e+01 c.1.8.3 83255 2b3wA 168 6.39e+01 2fbiA 142 6.53e+01 8rucA 475 6.70e+01 1burA c.1.14.1,d.58.9.1 29339,39245 1twfH 146 6.71e+01 1vpsA 289 6.83e+01 1vpsA b.121.6.1 23336 1eceA 358 6.86e+01 1eceA c.1.8.3 28813 1gheA 177 6.93e+01 d.108.1.1 76222 1ru8A 232 7.02e+01 c.26.2.1 97849 1bdb 277 7.02e+01 1bdb c.2.1.2 29874 1kgcE 242 7.04e+01 b.1.1.1,b.1.1.2 77386,77387 1xsvA 113 7.16e+01 1lldA 319 7.28e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1bmqA 167 7.33e+01 1pauA c.17.1.1 30998 2czrA 226 7.33e+01 2amyA 246 7.35e+01 1a48 306 7.44e+01 1a48 d.143.1.1 41590 2awaA 390 7.44e+01 1u04A 771 7.58e+01 b.34.14.1,c.55.3.10 107539,107540 1ymmE 249 7.62e+01 1fzqA 181 7.78e+01 1hurA c.37.1.8 32060 2d13A 227 7.86e+01 1y1xA 191 8.00e+01 1wjvA 79 8.07e+01 1t15A 214 8.07e+01 c.15.1.3,c.15.1.3 99067,99068 1n2sA 299 8.15e+01 c.2.1.2 79857 1zanL 214 8.28e+01 1pfsA 78 8.33e+01 1pfsA b.40.4.7 25391 2fcr 173 8.37e+01 1rcf c.23.5.1 31151 1xttA 216 8.40e+01 1m5q1 130 8.55e+01 1po5A 476 8.77e+01 a.104.1.1 94963