# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2anuA 255 5.75e-01 2cqnA 77 7.30e-01 2fo1D 85 9.90e-01 1svfB 38 1.01e+00 1svfB h.3.2.1 45764 1tmy 120 1.06e+00 1dbwA c.23.1.1 31083 1mb3A 124 1.15e+00 c.23.1.1 78907 1u0sY 118 1.43e+00 c.23.1.1 107566 6ldh 330 1.79e+00 3ldh c.2.1.5,d.162.1.1 30161,42128 1srrA 124 1.80e+00 1dz3A c.23.1.1 31110 1jf8A 131 2.47e+00 c.44.1.1 66621 1c9kA 180 2.54e+00 1c9kB c.37.1.11 32363 1yh3A 256 2.95e+00 2b99A 156 3.00e+00 2h88C 140 3.54e+00 1ccwA 137 3.77e+00 1be1 c.23.6.1 31238 1vp8A 201 4.90e+00 1h54A 754 5.17e+00 a.102.1.4,b.30.5.3 60634,60635 1z47A 355 5.51e+00 1bupA 386 5.97e+00 1ba1 c.55.1.1,c.55.1.1 33377,33378 1mvoA 136 6.78e+00 c.23.1.1 79513 2co5A 99 7.00e+00 2b5dX 528 7.42e+00 2ethA 154 7.78e+00 2fbiA 142 8.03e+00 2d48A 129 8.25e+00 1vk9A 151 8.49e+00 c.139.1.1 108640 1fobA 334 9.24e+00 c.1.8.3 83255 2d28C 149 9.49e+00 1l2tA 235 1.11e+01 c.37.1.12 73514 1qrvA 73 1.21e+01 1cktA a.21.1.1 16425 2fbwC 141 1.25e+01 1w8iA 156 1.39e+01 1s8nA 205 1.46e+01 c.23.1.1 105374 2f5gA 133 1.49e+01 1hziA 129 1.49e+01 1rcb a.26.1.2 61449 1m48A 133 1.52e+01 a.26.1.2 74443 2di4A 238 1.52e+01 1n13B 113 1.66e+01 2feaA 236 1.73e+01 1zanL 214 1.86e+01 1vgjA 184 1.90e+01 1om4A 422 2.04e+01 d.174.1.1 87067 1wovA 250 2.15e+01 1m6pA 152 2.17e+01 1m6pA b.64.1.1 27519 1fzqA 181 2.30e+01 1hurA c.37.1.8 32060 1z2lA 423 2.44e+01 1t8tA 271 2.51e+01 c.37.1.5 106685 1eciA 37 2.58e+01 1eciA a.33.1.1 16999 1ufiA 64 2.59e+01 a.30.4.1 99336 1n2sA 299 2.62e+01 c.2.1.2 79857 1ebfA 358 2.70e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 2fi9A 128 2.81e+01 1pmi 440 2.85e+01 1pmi b.82.1.3 28114 1squA 155 2.92e+01 d.252.1.1 98971 1lldA 319 2.94e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1ntyA 311 2.95e+01 a.87.1.1,b.55.1.1 103873,103874 2bf5A 98 2.95e+01 1r4pB 70 3.06e+01 b.40.2.1 97026 1u0sA 86 3.11e+01 d.58.24.1 107565 1pm3A 78 3.25e+01 b.41.1.2 94889 1ydwA 362 3.29e+01 1g8sA 230 3.29e+01 c.66.1.3 90507 1twfH 146 3.43e+01 1ltzA 297 3.52e+01 d.178.1.1 74254 1e19A 314 3.53e+01 1b7bA c.73.1.1 34967 1gheA 177 3.58e+01 d.108.1.1 76222 1meoA 209 3.71e+01 c.65.1.1 79035 1ehyA 294 3.72e+01 1ehyA c.69.1.11 34693 1v71A 323 3.72e+01 1xebA 150 3.78e+01 1qc7A 101 3.93e+01 1qc7A a.118.14.1 18456 2au3A 407 3.93e+01 1nni1 174 3.97e+01 1q9rA 219 4.08e+01 b.1.1.1,b.1.1.2 96305,96306 1eceA 358 4.08e+01 1eceA c.1.8.3 28813 1pzgA 331 4.09e+01 c.2.1.5,d.162.1.1 95425,95426 1wudA 89 4.29e+01 1wjvA 79 4.32e+01 1kqpA 271 4.39e+01 c.26.2.1 72883 2bbhA 269 4.50e+01 1mjuL 219 4.53e+01 b.1.1.1,b.1.1.2 91304,91305 1a0tP 413 4.62e+01 1a0tP f.4.3.2 43794 1ej8A 140 4.63e+01 1qupA b.1.8.1 22300 1wd5A 208 4.64e+01 1vpqA 273 4.67e+01 1u04A 771 4.78e+01 b.34.14.1,c.55.3.10 107539,107540 2gqrA 237 4.78e+01 2gpiA 91 5.00e+01 1v9yA 167 5.04e+01 d.110.3.2 108454 2gm5A 139 5.05e+01 1qxyA 252 5.05e+01 d.127.1.1 96565 2gclA 261 5.06e+01 1qp6A 35 5.12e+01 1qp6A k.16.1.1 46443 1cnzA 363 5.15e+01 1cnzA c.77.1.1 35061 2fyxA 143 5.25e+01 1b0uA 262 5.33e+01 1b0uA c.37.1.12 32370 1ohzB 60 5.40e+01 a.139.1.1 93044 1qy1A 174 5.42e+01 b.60.1.1 96568 1sc3A 178 5.51e+01 c.17.1.1 105416 1y1oA 203 5.58e+01 1po5A 476 5.58e+01 a.104.1.1 94963 1k4zA 159 5.62e+01 b.80.5.1 72070 1o8xA 146 5.68e+01 c.47.1.10 86681 1uv4A 293 5.74e+01 1xsvA 113 5.77e+01 1tzjA 338 5.87e+01 1josA 128 5.88e+01 d.52.7.1 84191 1lw7A 365 5.89e+01 c.26.1.3,c.37.1.1 74295,74296 1wz9A 375 5.89e+01 1yakA 263 5.93e+01 1lnsA 763 5.96e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1gsmA 210 5.98e+01 b.1.1.4,b.1.1.4 65535,65536 1ugpA 203 6.01e+01 d.149.1.1 107831 2fpqA 444 6.03e+01 1vioA 243 6.19e+01 d.265.1.3,d.66.1.5 100762,100763 1j5sA 463 6.20e+01 c.1.9.8 71580 1yp2A 451 6.23e+01 1cunA 213 6.28e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 1u9lA 70 6.32e+01 a.60.4.2 107751 1ghhA 81 6.42e+01 1ghhA d.57.1.1 38940 2c31A 568 6.42e+01 1j5pA 253 6.46e+01 d.81.1.3,c.2.1.3 71577,83092 1knb 196 6.48e+01 1qhvA b.21.1.1 23841 2b7kA 200 6.51e+01 1w4xA 542 6.51e+01 c.3.1.5,c.3.1.5 109171,109172 1zndA 174 6.51e+01 2ffcA 353 6.53e+01 1lj9A 144 6.57e+01 a.4.5.28 78035 1zpvA 91 6.66e+01 1o5kA 306 6.76e+01 c.1.10.1 92504 1zuhA 168 6.80e+01 2bbkL 125 6.88e+01 2bbkL g.21.1.1 44882 1yqvL 211 6.89e+01 2ajuL 216 7.05e+01 2axyA 73 7.23e+01 1s98A 107 7.26e+01 b.124.1.1 105377 1xb4A 202 7.26e+01 1q6oA 216 7.31e+01 c.1.2.3 95986 2gsfA 373 7.33e+01 1u5tA 233 7.59e+01 a.4.5.54,a.4.5.54 107684,107685 1z5yE 149 7.65e+01 1vqoO 116 7.69e+01 1u2mA 143 7.78e+01 f.48.1.1 107612 1lyvA 306 7.85e+01 c.45.1.2 74348 1mixA 206 8.00e+01 a.11.2.1,b.55.1.5 79166,79167 2fcr 173 8.03e+01 1rcf c.23.5.1 31151 2g76A 335 8.05e+01 2sak 121 8.13e+01 2sak d.15.5.1 37711 1drw 273 8.26e+01 1drw c.2.1.3,d.81.1.3 30057,39972 2a9uA 144 8.31e+01 2f4nA 273 8.55e+01 1xniA 118 8.61e+01 1gx5A 536 8.64e+01 e.8.1.4 70682 1rypG 244 8.64e+01 d.153.1.4 41938 1ukuA 102 8.75e+01 d.58.5.2 99533 1t0fA 276 8.89e+01 1p2fA 220 9.00e+01 a.4.6.1,c.23.1.1 87720,87721