# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fobA 334 4.89e-02 c.1.8.3 83255 1z47A 355 2.55e-01 1sg4A 260 4.82e-01 1xubA 298 7.92e-01 2b99A 156 8.13e-01 1l2tA 235 8.19e-01 c.37.1.12 73514 1vyrA 364 1.16e+00 c.1.4.1 108906 1c9kA 180 1.22e+00 1c9kB c.37.1.11 32363 1e6uA 321 1.25e+00 1bsvA c.2.1.2 29805 1jf8A 131 1.65e+00 c.44.1.1 66621 1vjoA 393 2.34e+00 c.67.1.3 100827 1bupA 386 2.39e+00 1ba1 c.55.1.1,c.55.1.1 33377,33378 2f9zC 159 3.02e+00 1f28A 297 3.54e+00 1bkpA d.117.1.1 59608 1z2lA 423 3.70e+00 1w44A 331 3.84e+00 1mb3A 124 3.96e+00 c.23.1.1 78907 1wb4A 297 4.55e+00 1vp8A 201 4.59e+00 1ivyA 452 4.78e+00 1ivyA c.69.1.5 34654 2gtrA 261 5.04e+00 2gqrA 237 5.86e+00 1srrA 124 5.96e+00 1dz3A c.23.1.1 31110 2fukA 220 6.05e+00 1v60A 123 6.85e+00 1zhvA 134 7.08e+00 2cqnA 77 7.23e+00 2b61A 377 7.27e+00 1j5pA 253 7.29e+00 d.81.1.3,c.2.1.3 71577,83092 1k77A 260 7.45e+00 c.1.15.5 72096 1b0uA 262 7.70e+00 1b0uA c.37.1.12 32370 1fzqA 181 8.35e+00 1hurA c.37.1.8 32060 1h3fA 432 8.79e+00 c.26.1.1,d.66.1.4 76631,76632 1gheA 177 9.07e+00 d.108.1.1 76222 1pm3A 78 9.10e+00 b.41.1.2 94889 1zy9A 564 9.60e+00 1hjsA 332 9.97e+00 c.1.8.3 83492 1w78A 422 1.09e+01 1xqwA 293 1.09e+01 1hp1A 516 1.14e+01 d.114.1.1,d.159.1.2 70976,70977 1mtzA 293 1.15e+01 c.69.1.7 79467 1w2xA 758 1.15e+01 c.14.1.4,c.14.1.4 109134,109135 1z41A 338 1.16e+01 7a3hA 303 1.25e+01 7a3hA c.1.8.3 28817 1v33A 366 1.27e+01 d.264.1.1 100278 1v02A 565 1.30e+01 c.1.8.4 108194 1wy5A 317 1.31e+01 1vf8A 377 1.37e+01 1ydwA 362 1.46e+01 1ek0A 170 1.48e+01 1ctqA c.37.1.8 32076 1s9jA 341 1.49e+01 1u0sY 118 1.53e+01 c.23.1.1 107566 1tmy 120 1.56e+01 1dbwA c.23.1.1 31083 2ethA 154 1.58e+01 2azpA 318 1.58e+01 1uyrA 737 1.59e+01 c.14.1.4,c.14.1.4 100188,100189 1e19A 314 1.61e+01 1b7bA c.73.1.1 34967 2c31A 568 1.65e+01 1s95A 333 1.72e+01 d.159.1.3 105375 1ltzA 297 1.72e+01 d.178.1.1 74254 1szoA 257 1.73e+01 c.14.1.3 106164 7odcA 424 1.77e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1i39A 225 1.80e+01 1ekeA c.55.3.1 61585 2ey4C 82 1.91e+01 1z5yE 149 1.92e+01 1ne9A 335 2.02e+01 d.108.1.4,d.108.1.4 91839,91840 1ebfA 358 2.06e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 2gkeA 274 2.13e+01 1svfB 38 2.15e+01 1svfB h.3.2.1 45764 1jmvA 141 2.25e+01 c.26.2.4 66897 2ffcA 353 2.27e+01 1wb0A 445 2.38e+01 1z3eA 132 2.38e+01 1cnzA 363 2.39e+01 1cnzA c.77.1.1 35061 1lv7A 257 2.41e+01 c.37.1.20 78232 1dysA 348 2.41e+01 1bvwA c.6.1.1 30669 1r8gA 372 2.46e+01 d.128.1.3 104845 1zuhA 168 2.55e+01 1o0iA 138 2.59e+01 d.38.1.5 86532 1qsmA 152 2.61e+01 1qsmA d.108.1.1 40808 1f2vA 219 2.67e+01 1f2vA c.23.17.1 59627 1eiwA 111 2.71e+01 1eiwA c.23.3.1 31130 1c44A 123 2.73e+01 1qndA d.106.1.1 40795 1m3uA 264 2.77e+01 c.1.12.8 84784 2f5gA 133 2.78e+01 1nu7D 282 2.80e+01 a.8.6.1,a.8.6.1 92191,92192 1dkiA 371 2.81e+01 1dkiA d.3.1.1 37090 1ayoA 130 2.81e+01 1ayoA b.2.4.1 22431 1w5fA 353 2.87e+01 1g291 372 2.88e+01 1g291 1n13B 113 2.90e+01 1k66A 149 2.95e+01 c.23.1.1 90941 2feaA 236 2.98e+01 1n2sA 299 3.02e+01 c.2.1.2 79857 2ge3A 170 3.06e+01 2fexA 188 3.14e+01 2anuA 255 3.20e+01 2a1xA 308 3.24e+01 1dozA 309 3.24e+01 1ak1 c.92.1.1 35592 1j8mF 297 3.27e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1ua4A 455 3.28e+01 c.72.1.3 99128 2b5dX 528 3.42e+01 1q7zA 566 3.53e+01 c.1.21.2,c.1.26.1 96090,96091 1bg4 302 3.54e+01 1taxA c.1.8.3 28806 1t8tA 271 3.60e+01 c.37.1.5 106685 1i60A 278 3.61e+01 c.1.15.4 71118 1ypfA 336 3.61e+01 2c07A 285 3.62e+01 1vmoA 163 3.63e+01 1vmoA b.77.1.1 27974 1ekeA 230 3.64e+01 1ekeA c.55.3.1 33572 1edqA 540 3.66e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1ursA 402 3.70e+01 c.94.1.1 99833 1gqzA 274 3.73e+01 d.21.1.1,d.21.1.1 83311,83312 2d69A 430 3.76e+01 1bqcA 302 3.77e+01 1bqcA c.1.8.3 28831 1y1oA 203 3.84e+01 1u94A 356 3.85e+01 c.37.1.11,d.48.1.1 107743,107744 1iktA 120 3.92e+01 d.106.1.1 66188 1cr1A 296 4.04e+01 1cr1A c.37.1.11 32286 2az4A 429 4.05e+01 1lnsA 763 4.14e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1u4gA 301 4.18e+01 d.92.1.2 107670 1n57A 291 4.19e+01 c.23.16.2 85328 1t0fA 276 4.23e+01 2bbsA 290 4.28e+01 1ufwA 95 4.41e+01 d.58.7.1 99358 2g76A 335 4.47e+01 1atg 231 4.51e+01 1atg c.94.1.1 35834 1yavA 159 4.53e+01 1s57A 153 4.57e+01 1pwxA 254 4.60e+01 c.2.1.2 95262 1uh5A 329 4.64e+01 c.2.1.2 107840 1zmtA 254 4.65e+01 1qv9A 283 4.67e+01 c.127.1.1 96356 1m0wA 491 4.73e+01 c.30.1.4,d.142.1.6 78363,78364 2axyA 73 4.73e+01 1wohA 305 4.74e+01 c.42.1.1 109446 1r4pB 70 4.77e+01 b.40.2.1 97026 2fyxA 143 4.77e+01 1gw5S 142 4.81e+01 d.110.4.2 70633 1rxdA 159 4.87e+01 2bo4A 397 4.93e+01 1vk9A 151 4.97e+01 c.139.1.1 108640 1wkyA 464 5.21e+01 1qc7A 101 5.23e+01 1qc7A a.118.14.1 18456 1zp4A 304 5.24e+01 1kutA 230 5.28e+01 d.143.1.1 73017 2aa4A 289 5.29e+01 1kzlA 208 5.34e+01 b.43.4.3,b.43.4.3 77635,77636 2cwxA 430 5.45e+01 2h4vA 320 5.49e+01 2fo1D 85 5.50e+01 1odzA 386 5.52e+01 c.1.8.3 86889 1vc3B 97 5.53e+01 1so7A 382 5.71e+01 1r0rE 274 5.71e+01 c.41.1.1 96735 1f9yA 158 5.72e+01 d.58.30.1 83249 1vdmA 153 5.72e+01 2dri 271 5.79e+01 2dri c.93.1.1 35637 1lehA 364 5.80e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1yge 839 5.88e+01 1yge a.119.1.1,b.12.1.1 19234,23634 2bllA 345 5.90e+01 1vp2A 208 5.90e+01 1thm 279 5.90e+01 1gci c.41.1.1 32544 1y10A 407 5.91e+01 1z4eA 153 5.93e+01 1s8nA 205 5.99e+01 c.23.1.1 105374 1nar 290 6.01e+01 1nar c.1.8.5 28988 1sjiA 350 6.06e+01 1jbkA 195 6.08e+01 c.37.1.20 71631 1i2mA 216 6.08e+01 1byuA c.37.1.8 61568 1nzjA 298 6.13e+01 c.26.1.1 92377 1u2eA 289 6.13e+01 1q6oA 216 6.16e+01 c.1.2.3 95986 1ur1A 378 6.17e+01 c.1.8.3 99804 1vplA 256 6.17e+01 1jflA 228 6.19e+01 c.78.2.1,c.78.2.1 71656,71657 1vb3A 428 6.19e+01 1jksA 294 6.21e+01 d.144.1.7 71710 1th0A 226 6.26e+01 d.3.1.7 106903 1v71A 323 6.26e+01 1zj6A 187 6.27e+01 1f9vA 347 6.28e+01 1bg2 c.37.1.9 59745 2h1nA 567 6.31e+01 2ai4A 119 6.36e+01 2czdA 208 6.37e+01 2f4nA 273 6.50e+01 1pkoA 139 6.56e+01 b.1.1.1 88147 1lt8A 406 6.73e+01 c.1.26.1 78186 2fbiA 142 6.78e+01 2c0nA 203 6.78e+01 1wkaA 147 6.82e+01 1io2A 213 6.85e+01 1ekeA c.55.3.1 62612 2cw5A 255 6.86e+01 1vpqA 273 6.95e+01 1mvoA 136 7.04e+01 c.23.1.1 79513 1iv8A 720 7.07e+01 b.71.1.1,c.1.8.1 76842,76843 1amf 233 7.08e+01 1wod c.94.1.1 35833 1fmcA 255 7.08e+01 1cydA c.2.1.2 29856 2fhxA 246 7.08e+01 6ldh 330 7.08e+01 3ldh c.2.1.5,d.162.1.1 30161,42128 1h54A 754 7.08e+01 a.102.1.4,b.30.5.3 60634,60635 1uv4A 293 7.10e+01 1rvgA 305 7.17e+01 c.1.10.2 97920 1ff9A 450 7.19e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1ispA 181 7.19e+01 c.69.1.18 76778 1wvhA 134 7.19e+01 1q45A 391 7.22e+01 c.1.4.1 95780 1vfvA 366 7.27e+01 c.37.1.9 108592 1jpaA 312 7.36e+01 d.144.1.7 67011 2frnA 278 7.39e+01 1y7lA 316 7.40e+01 1yd7A 395 7.58e+01 2au3A 407 7.59e+01 1vjpA 394 7.70e+01 c.2.1.3,d.81.1.3 100828,100829 1xb4A 202 7.73e+01 1hziA 129 7.75e+01 1rcb a.26.1.2 61449 1mugA 168 7.76e+01 1mugA c.18.1.2 31030 1vetA 124 7.83e+01 d.110.7.1 108553 2d48A 129 7.85e+01 1jjfA 268 7.86e+01 c.69.1.2 66765 1nu0A 138 8.00e+01 c.55.3.8 92165 1kktA 511 8.01e+01 a.102.2.1 68687 1ep3A 311 8.03e+01 2dorA c.1.4.1 28597 1gefA 123 8.06e+01 1gefA c.52.1.18 60465 1nhkL 144 8.09e+01 1npk d.58.6.1 39142 1o8xA 146 8.11e+01 c.47.1.10 86681 1dbiA 280 8.18e+01 1gci c.41.1.1 32543 1zjjA 263 8.24e+01 1duvG 333 8.25e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1pcxA 810 8.28e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1es9A 232 8.29e+01 1wab c.23.10.3 31340 1ccwA 137 8.31e+01 1be1 c.23.6.1 31238 2ftxB 64 8.35e+01 1a0tP 413 8.38e+01 1a0tP f.4.3.2 43794 1n82A 331 8.45e+01 c.1.8.3 91703 2d00A 109 8.51e+01 1s2wA 295 8.55e+01 c.1.12.7 98407 1g6hA 257 8.58e+01 1gajA c.37.1.12 60318 1ig8A 486 8.58e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1ghhA 81 8.59e+01 1ghhA d.57.1.1 38940 1rw7A 243 8.84e+01 c.23.16.2 97963 1pg4A 652 8.88e+01 e.23.1.1 88067 1o66A 275 8.91e+01 c.1.12.8 92547 2sak 121 8.92e+01 2sak d.15.5.1 37711