# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fo1D 85 2.45e-01 2fxaA 207 8.11e-01 2ethA 154 9.14e-01 1ehyA 294 9.95e-01 1ehyA c.69.1.11 34693 2h88C 140 1.28e+00 2cqnA 77 1.88e+00 1svfB 38 2.03e+00 1svfB h.3.2.1 45764 2co5A 99 2.29e+00 2fbwC 141 2.62e+00 1w7jB 151 3.24e+00 1o8vA 134 3.24e+00 b.60.1.2 86680 1qrvA 73 3.55e+00 1cktA a.21.1.1 16425 1jf8A 131 3.96e+00 c.44.1.1 66621 6ldh 330 4.62e+00 3ldh c.2.1.5,d.162.1.1 30161,42128 1tmy 120 5.31e+00 1dbwA c.23.1.1 31083 1srrA 124 5.94e+00 1dz3A c.23.1.1 31110 1msc 129 6.21e+00 1msc d.85.1.1 40039 1u0sY 118 6.22e+00 c.23.1.1 107566 1t6sA 162 7.11e+00 1mb3A 124 7.84e+00 c.23.1.1 78907 1h54A 754 8.55e+00 a.102.1.4,b.30.5.3 60634,60635 1w8iA 156 9.59e+00 2d28C 149 9.62e+00 1ccwA 137 1.04e+01 1be1 c.23.6.1 31238 1mvoA 136 1.05e+01 c.23.1.1 79513 1vk9A 151 1.45e+01 c.139.1.1 108640 1wwuA 99 1.48e+01 1qp6A 35 1.54e+01 1qp6A k.16.1.1 46443 1yukB 120 1.56e+01 1eumA 165 1.59e+01 1eumA a.25.1.1 59507 1v54E 109 1.70e+01 a.118.11.1 100326 2gm5A 139 1.77e+01 1m5q1 130 1.89e+01 1cnzA 363 2.04e+01 1cnzA c.77.1.1 35061 1wovA 250 2.04e+01 1bx7 55 2.12e+01 1bx7 g.3.15.1 44355 1m6kA 251 2.19e+01 e.3.1.1 78695 1mzbA 136 2.27e+01 a.4.5.42 91497 1w2wA 211 2.44e+01 c.124.1.5 109130 1oqcA 125 2.63e+01 a.24.15.1 87264 1u5tA 233 2.76e+01 a.4.5.54,a.4.5.54 107684,107685 1ualA 274 2.80e+01 c.116.1.4 88383 1u04A 771 3.00e+01 b.34.14.1,c.55.3.10 107539,107540 2fbiA 142 3.03e+01 2btiA 63 3.17e+01 2fwuA 157 3.18e+01 1r7jA 95 3.28e+01 a.4.5.49 104836 1vioA 243 3.55e+01 d.265.1.3,d.66.1.5 100762,100763 1c75A 71 3.68e+01 451c a.3.1.1 15796 2bbhA 269 3.93e+01 1pfsA 78 3.96e+01 1pfsA b.40.4.7 25391 1cf4B 44 4.27e+01 1cf4B 1m6pA 152 4.29e+01 1m6pA b.64.1.1 27519 1wjvA 79 4.34e+01 2gpiA 91 4.44e+01 1o54A 277 4.46e+01 c.66.1.13 92482 2fcr 173 4.58e+01 1rcf c.23.5.1 31151 2bf5A 98 4.63e+01 1v71A 323 4.79e+01 1sc3A 178 4.82e+01 c.17.1.1 105416 1l0lK 56 4.96e+01 f.23.15.1 84497 2d13A 227 4.98e+01 1twfH 146 5.06e+01 1ysqA 193 5.11e+01 1pm3A 78 5.15e+01 b.41.1.2 94889 1qqp3 220 5.26e+01 1qqp3 1vp8A 201 5.27e+01 2f5gA 133 5.35e+01 1d7mA 101 5.35e+01 1d7mA h.1.10.1 45628 1zanL 214 5.42e+01 1j5pA 253 5.42e+01 d.81.1.3,c.2.1.3 71577,83092 1qg3A 195 5.43e+01 1qg3A b.1.2.1,b.1.2.1 21993,21994 1lj9A 144 5.52e+01 a.4.5.28 78035 1ntyA 311 5.64e+01 a.87.1.1,b.55.1.1 103873,103874 1gs9A 165 5.65e+01 a.24.1.1 83313 2avyM 117 5.68e+01 2a6hC 1119 5.68e+01 2coeA 120 5.75e+01 2b7kA 200 5.83e+01 1d7oA 297 5.83e+01 1enp c.2.1.2 29907 1k3bB 164 5.84e+01 d.3.1.1 72015 1z5yE 149 5.94e+01 1qtxB 21 5.99e+01 1v60A 123 6.02e+01 1xniA 118 6.38e+01 1vyfA 135 6.46e+01 b.60.1.2 108902 1yukA 103 6.90e+01 1gheA 177 6.91e+01 d.108.1.1 76222 1kgcE 242 7.14e+01 b.1.1.1,b.1.1.2 77386,77387 1zybA 232 7.17e+01 1ghhA 81 7.19e+01 1ghhA d.57.1.1 38940 1pmi 440 7.33e+01 1pmi b.82.1.3 28114 1x65A 89 7.49e+01 1hf2A 210 7.51e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 2c55A 52 7.58e+01 2b3wA 168 7.66e+01 2sak 121 7.70e+01 2sak d.15.5.1 37711 1hn4A 131 7.71e+01 a.133.1.2 65893 1pb1A 416 7.77e+01 c.77.1.1 88014 2anuA 255 7.80e+01 1g4iA 123 7.86e+01 1poa a.133.1.2 60241 1u9lA 70 7.93e+01 a.60.4.2 107751 1s8nA 205 7.93e+01 c.23.1.1 105374 1bupA 386 8.10e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1ej8A 140 8.12e+01 1qupA b.1.8.1 22300 1vd4A 62 8.25e+01 1om4A 422 8.44e+01 d.174.1.1 87067 1mv8A 436 8.50e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1bzg 34 8.54e+01 1bzg j.15.1.1 46166 2fqmA 75 8.59e+01 1x3cA 73 8.62e+01 1m48A 133 8.72e+01 a.26.1.2 74443 1g03A 134 8.90e+01 1qrjB a.73.1.1 60162 1kqpA 271 8.93e+01 c.26.2.1 72883