# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fobA 334 9.41e-02 c.1.8.3 83255 1xx4A 261 1.22e-01 1z47A 355 3.26e-01 1t6kA 278 3.78e-01 1sg4A 260 4.58e-01 1u1wA 298 5.09e-01 1xubA 298 8.12e-01 2b99A 156 8.34e-01 1l2tA 235 1.02e+00 c.37.1.12 73514 1yuwA 554 1.17e+00 1vypX 364 1.29e+00 c.1.4.1 108905 1c9kA 180 1.37e+00 1c9kB c.37.1.11 32363 1vyrA 364 1.48e+00 c.1.4.1 108906 1gvoA 364 1.54e+00 c.1.4.1 76357 1h61A 364 1.61e+00 1oyc c.1.4.1 60657 1p5jA 372 1.64e+00 c.79.1.1 104067 2abbA 364 1.68e+00 1e7rA 321 1.74e+00 1bsvA c.2.1.2 29808 1jf8A 131 1.97e+00 c.44.1.1 66621 1e6uA 321 2.07e+00 1bsvA c.2.1.2 29805 1z2lA 423 2.39e+00 1bupA 386 2.46e+00 1ba1 c.55.1.1,c.55.1.1 33377,33378 2f9zC 159 2.58e+00 1f28A 297 2.96e+00 1bkpA d.117.1.1 59608 1nekA 588 3.11e+00 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1vjoA 393 3.31e+00 c.67.1.3 100827 1h49A 512 3.51e+00 c.1.8.4 83477 1e55A 512 3.53e+00 1e70M c.1.8.4 28934 1kay 381 3.61e+00 1ba1 c.55.1.1,c.55.1.1 33385,33386 1wb4A 297 4.19e+00 2ct8A 497 5.08e+00 1ivyA 452 5.21e+00 1ivyA c.69.1.5 34654 1mb3A 124 5.69e+00 c.23.1.1 78907 1gklA 297 6.26e+00 c.69.1.2 65250 1yvkA 163 6.75e+00 1vp8A 201 6.80e+00 2fukA 220 7.02e+00 1pwhA 327 7.83e+00 c.79.1.1 95224 1srrA 124 8.01e+00 1dz3A c.23.1.1 31110 2b61A 377 8.04e+00 1v60A 123 8.05e+00 2gtrA 261 8.16e+00 2gqrA 237 8.23e+00 1fzqA 181 8.40e+00 1hurA c.37.1.8 32060 1j5pA 253 8.40e+00 d.81.1.3,c.2.1.3 71577,83092 1zhvA 134 8.47e+00 1phk 298 9.20e+00 1cdkA d.144.1.7 41635 1w44A 331 9.62e+00 1ac5 483 9.81e+00 1ac5 c.69.1.5 34653 1mtzA 293 1.02e+01 c.69.1.7 79467 1k77A 260 1.02e+01 c.1.15.5 72096 1b0uA 262 1.02e+01 1b0uA c.37.1.12 32370 1xqwA 293 1.05e+01 1w2xA 758 1.14e+01 c.14.1.4,c.14.1.4 109134,109135 1gheA 177 1.16e+01 d.108.1.1 76222 1y9kA 157 1.24e+01 1pm3A 78 1.24e+01 b.41.1.2 94889 1u9jA 358 1.32e+01 1lci 550 1.33e+01 1lci e.23.1.1 43349 1hp1A 516 1.38e+01 d.114.1.1,d.159.1.2 70976,70977 1s9jA 341 1.43e+01 1o0iA 138 1.43e+01 d.38.1.5 86532 1hjsA 332 1.47e+01 c.1.8.3 83492 2ethA 154 1.51e+01 1uyrA 737 1.52e+01 c.14.1.4,c.14.1.4 100188,100189 2azpA 318 1.55e+01 1j8yF 297 1.55e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1ciy 590 1.56e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1w78A 422 1.57e+01 2cqnA 77 1.57e+01 1ush 550 1.64e+01 1ush d.114.1.1,d.159.1.2 40923,42079 2reb 352 1.65e+01 2reb c.37.1.11,d.48.1.1 32282,38767 1h3fA 432 1.70e+01 c.26.1.1,d.66.1.4 76631,76632 1v33A 366 1.72e+01 d.264.1.1 100278 1u0sY 118 1.74e+01 c.23.1.1 107566 1a04A 215 1.75e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 2b6eA 146 1.77e+01 1tmy 120 1.79e+01 1dbwA c.23.1.1 31083 1szoA 257 1.89e+01 c.14.1.3 106164 2ey4C 82 1.98e+01 1vf8A 377 1.99e+01 2gkeA 274 2.00e+01 1z5yE 149 2.00e+01 7a3hA 303 2.01e+01 7a3hA c.1.8.3 28817 1o8uA 257 2.08e+01 c.14.1.3 81194 1dkiA 371 2.15e+01 1dkiA d.3.1.1 37090 1z41A 338 2.16e+01 1ebfA 358 2.21e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1e9lA 377 2.22e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 1z7bA 358 2.34e+01 1v02A 565 2.41e+01 c.1.8.4 108194 1n13B 113 2.45e+01 1s95A 333 2.48e+01 d.159.1.3 105375 1s7jA 262 2.49e+01 d.21.1.2 98647 1zy9A 564 2.53e+01 1vl8A 267 2.58e+01 c.2.1.2 108733 1ne9A 335 2.68e+01 d.108.1.4,d.108.1.4 91839,91840 1e19A 314 2.69e+01 1b7bA c.73.1.1 34967 1ezm 301 2.70e+01 1hyt d.92.1.2 58980 2ffcA 353 2.80e+01 1dysA 348 2.86e+01 1bvwA c.6.1.1 30669 7odcA 424 2.87e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1ydwA 362 2.88e+01 1hkkA 364 3.04e+01 c.1.8.5,d.26.3.1 90634,90635 1ayoA 130 3.05e+01 1ayoA b.2.4.1 22431 1cnzA 363 3.19e+01 1cnzA c.77.1.1 35061 1zckA 154 3.19e+01 1svfB 38 3.20e+01 1svfB h.3.2.1 45764 2a1xA 308 3.24e+01 2f5gA 133 3.26e+01 1n2sA 299 3.27e+01 c.2.1.2 79857 1xwiA 322 3.33e+01 1zclA 180 3.34e+01 1g71A 347 3.39e+01 1g71A d.264.1.1 43268 1i39A 225 3.39e+01 1ekeA c.55.3.1 61585 1r8gA 372 3.39e+01 d.128.1.3 104845 1ltzA 297 3.41e+01 d.178.1.1 74254 2fexA 188 3.56e+01 1jmvA 141 3.57e+01 c.26.2.4 66897 2c31A 568 3.59e+01 1nu7D 282 3.60e+01 a.8.6.1,a.8.6.1 92191,92192 1iktA 120 3.61e+01 d.106.1.1 66188 1ofuA 320 3.69e+01 c.32.1.1,d.79.2.1 86972,86973 1ctn 540 3.71e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21876,29005,38439 1w5fA 353 3.76e+01 1c44A 123 3.84e+01 1qndA d.106.1.1 40795 1wb0A 445 3.85e+01 1g291 372 3.87e+01 1g291 2ge3A 170 3.91e+01 1t8tA 271 3.95e+01 c.37.1.5 106685 1j8mF 297 3.95e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1i60A 278 4.01e+01 c.1.15.4 71118 1lv7A 257 4.02e+01 c.37.1.20 78232 1gqzA 274 4.03e+01 d.21.1.1,d.21.1.1 83311,83312 1qvbA 481 4.11e+01 1qvbA c.1.8.4 28983 1kzlA 208 4.18e+01 b.43.4.3,b.43.4.3 77635,77636 1ps9A 671 4.23e+01 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1zuhA 168 4.23e+01 1x24A 180 4.25e+01 1wy5A 317 4.28e+01 1z3eA 132 4.34e+01 1cr1A 296 4.35e+01 1cr1A c.37.1.11 32286 1u94A 356 4.36e+01 c.37.1.11,d.48.1.1 107743,107744 2bp1A 360 4.37e+01 2bl5A 140 4.39e+01 1f2vA 219 4.39e+01 1f2vA c.23.17.1 59627 1bg4 302 4.40e+01 1taxA c.1.8.3 28806 1eiwA 111 4.43e+01 1eiwA c.23.3.1 31130 1yavA 159 4.55e+01 1lnsA 763 4.56e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1mzjA 339 4.59e+01 c.95.1.2,c.95.1.2 79700,79701 2axyA 73 4.64e+01 1qsmA 152 4.66e+01 1qsmA d.108.1.1 40808 1m3uA 264 4.72e+01 c.1.12.8 84784 1y1oA 203 4.84e+01 1lehA 364 4.84e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1ru8A 232 4.84e+01 c.26.2.1 97849 1edqA 540 4.84e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1ewqA 765 4.86e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 2feaA 236 4.87e+01 1yu6A 275 4.94e+01 1vmoA 163 4.96e+01 1vmoA b.77.1.1 27974 1i6iA 366 5.01e+01 1bg2 c.37.1.9 61844 1gw5S 142 5.02e+01 d.110.4.2 70633 1xmiA 291 5.05e+01 2fyxA 143 5.06e+01 1pwxA 254 5.10e+01 c.2.1.2 95262 1zmtA 254 5.27e+01 1ek0A 170 5.32e+01 1ctqA c.37.1.8 32076 1rl2A 137 5.36e+01 1rl2A b.34.5.3,b.40.4.5 24610,25342 1c3wA 222 5.39e+01 1c3wA f.13.1.1 43405 2anuA 255 5.41e+01 1ekeA 230 5.55e+01 1ekeA c.55.3.1 33572 1vfvA 366 5.55e+01 c.37.1.9 108592 1ua4A 455 5.60e+01 c.72.1.3 99128 1rxdA 159 5.64e+01 1i2mA 216 5.70e+01 1byuA c.37.1.8 61568 1ufwA 95 5.73e+01 d.58.7.1 99358 1y10A 407 5.76e+01 1ursA 402 5.78e+01 c.94.1.1 99833 2b5dX 528 5.79e+01 2ac2A 309 5.85e+01 1cseE 274 5.86e+01 1gci c.41.1.1 32481 1m0wA 491 5.87e+01 c.30.1.4,d.142.1.6 78363,78364 2d69A 430 5.89e+01 1vetA 124 5.93e+01 d.110.7.1 108553 1r4pB 70 5.93e+01 b.40.2.1 97026 1dozA 309 6.01e+01 1ak1 c.92.1.1 35592 2ac4A 309 6.07e+01 1uh5A 329 6.18e+01 c.2.1.2 107840 1k66A 149 6.18e+01 c.23.1.1 90941 2c07A 285 6.18e+01 1r0rE 274 6.19e+01 c.41.1.1 96735 1jksA 294 6.21e+01 d.144.1.7 71710 2az4A 429 6.22e+01 1t0fA 276 6.24e+01 1g0hA 252 6.46e+01 1dk4A e.7.1.1 60171 1x05A 129 6.51e+01 1odzA 386 6.52e+01 c.1.8.3 86889 2bbsA 290 6.55e+01 1s57A 153 6.59e+01 1nar 290 6.65e+01 1nar c.1.8.5 28988 1o70A 324 6.69e+01 b.118.1.1,b.118.1.1 81115,81116 1n0wA 243 6.71e+01 c.37.1.11 79772 1vplA 256 6.77e+01 1k68A 140 6.81e+01 c.23.1.1 90943 1qv9A 283 6.83e+01 c.127.1.1 96356 1vk9A 151 6.95e+01 c.139.1.1 108640 2a1dD 329 6.97e+01 1f1zA 273 7.07e+01 1f1zA a.4.5.27,c.52.1.16 16081,33334 1auk 489 7.08e+01 1auk c.76.1.2 35030 2ftxB 64 7.33e+01 1zjjA 263 7.35e+01 1so7A 382 7.36e+01 1ypfA 336 7.38e+01 2h4vA 320 7.38e+01 1atg 231 7.39e+01 1atg c.94.1.1 35834 1kv8A 216 7.43e+01 c.1.2.3 73054 1q6oA 216 7.43e+01 c.1.2.3 95986 1q45A 391 7.55e+01 c.1.4.1 95780 2ai4A 119 7.56e+01 2fo1D 85 7.56e+01 1s8nA 205 7.63e+01 c.23.1.1 105374 1bqcA 302 7.63e+01 1bqcA c.1.8.3 28831 1u2eA 289 7.67e+01 1u4gA 301 7.80e+01 d.92.1.2 107670 2bllA 345 7.84e+01 2a9fA 398 8.04e+01 1gefA 123 8.08e+01 1gefA c.52.1.18 60465 1jx2B 315 8.27e+01 c.37.1.8 67404 1jbkA 195 8.37e+01 c.37.1.20 71631 1ff9A 450 8.38e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1f9vA 347 8.47e+01 1bg2 c.37.1.9 59745 2fhxA 246 8.48e+01 1mvoA 136 8.49e+01 c.23.1.1 79513 2b0vA 153 8.53e+01 1bwzA 274 8.53e+01 1bwzA d.21.1.1,d.21.1.1 38337,38338 1lt8A 406 8.55e+01 c.1.26.1 78186 2h1nA 567 8.58e+01 1jjiA 311 8.58e+01 c.69.1.2 66766 2czdA 208 8.59e+01 2bo4A 397 8.60e+01 1a0tP 413 8.69e+01 1a0tP f.4.3.2 43794 1vc3B 97 8.71e+01 1wod 233 8.72e+01 1wod c.94.1.1 35832 1pkoA 139 8.72e+01 b.1.1.1 88147 1wohA 305 8.72e+01 c.42.1.1 109446 1amf 233 8.78e+01 1wod c.94.1.1 35833 2fbiA 142 8.79e+01 1jx7A 117 8.81e+01 c.114.1.1 77195 1th0A 226 8.83e+01 d.3.1.7 106903 1qk8A 146 8.84e+01 1ewxA c.47.1.10 33061 2cwxA 430 8.88e+01 1zp4A 304 8.92e+01 2f4nA 273 8.99e+01 1uv4A 293 9.00e+01 1kutA 230 9.00e+01 d.143.1.1 73017