# TARGET T0344 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0344.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 2.37146 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 L 0.077 0.055 0.016 0.004 0.012 0.004 0.004 0.003 0.001 0.001 0.001 0.001 0.002 0.003 0.004 0.002 0.330 0.009 0.069 0.407 2 I 0.025 0.077 0.004 0.002 0.015 0.009 0.013 0.006 0.002 0.001 0.001 0.002 0.006 0.007 0.003 0.001 0.488 0.003 0.054 0.281 3 I 0.011 0.057 0.003 0.001 0.026 0.007 0.019 0.012 0.001 0.001 0.002 0.002 0.011 0.006 0.009 0.003 0.633 0.002 0.024 0.171 4 G 0.017 0.050 0.003 0.001 0.004 0.002 0.001 0.002 0.003 0.003 0.002 0.001 0.002 0.003 0.001 0.002 0.576 0.006 0.034 0.286 5 L 0.034 0.028 0.004 0.001 0.001 0.001 0.001 0.001 0.006 0.002 0.009 0.001 0.001 0.001 0.001 0.001 0.692 0.003 0.019 0.197 6 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 7 R 0.010 0.006 0.002 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.525 0.003 0.094 0.353 8 Y 0.121 0.018 0.001 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.343 0.008 0.047 0.456 9 M 0.092 0.021 0.002 0.002 0.007 0.003 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.669 0.008 0.014 0.167 10 E 0.036 0.007 0.003 0.001 0.003 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.002 0.341 0.008 0.066 0.521 11 V 0.018 0.004 0.003 0.001 0.001 0.002 0.001 0.003 0.001 0.001 0.001 0.004 0.012 0.087 0.004 0.002 0.575 0.002 0.021 0.258 12 N 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.035 0.002 0.540 0.067 0.004 0.001 0.185 0.001 0.016 0.144 13 I 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.094 0.003 0.001 0.002 0.001 0.001 0.001 0.409 0.003 0.041 0.434 14 K 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.754 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.073 0.001 0.041 0.113 15 D 0.004 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.059 0.005 0.073 0.849 16 G 0.070 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.088 0.025 0.083 0.706 17 K 0.725 0.003 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.023 0.044 0.163 18 I 0.010 0.012 0.006 0.018 0.010 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.267 0.002 0.096 0.570 19 I 0.001 0.001 0.001 0.001 0.745 0.085 0.042 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.059 0.001 0.005 0.052 20 G 0.015 0.009 0.001 0.001 0.005 0.026 0.010 0.007 0.003 0.001 0.001 0.001 0.002 0.002 0.005 0.009 0.224 0.007 0.056 0.617 21 R 0.070 0.006 0.005 0.001 0.001 0.001 0.004 0.009 0.001 0.001 0.001 0.003 0.001 0.006 0.003 0.005 0.331 0.007 0.114 0.432 22 S 0.031 0.012 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.003 0.003 0.002 0.008 0.005 0.028 0.012 0.177 0.006 0.104 0.602 23 L 0.039 0.021 0.004 0.002 0.004 0.001 0.004 0.002 0.002 0.005 0.001 0.003 0.001 0.004 0.006 0.004 0.396 0.010 0.072 0.421 24 D 0.019 0.015 0.001 0.001 0.002 0.001 0.001 0.001 0.009 0.005 0.167 0.016 0.035 0.022 0.003 0.002 0.088 0.004 0.156 0.456 25 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.996 26 R 0.014 0.007 0.001 0.001 0.001 0.002 0.001 0.001 0.027 0.024 0.001 0.002 0.006 0.003 0.004 0.002 0.065 0.008 0.441 0.392 27 E 0.368 0.015 0.003 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.023 0.015 0.096 0.466 28 G 0.111 0.151 0.002 0.001 0.002 0.002 0.004 0.001 0.015 0.006 0.013 0.002 0.008 0.004 0.001 0.002 0.085 0.018 0.052 0.520 29 G 0.442 0.020 0.054 0.001 0.003 0.003 0.003 0.006 0.003 0.004 0.001 0.001 0.005 0.001 0.001 0.001 0.029 0.030 0.060 0.335 30 L 0.059 0.023 0.061 0.006 0.001 0.005 0.001 0.001 0.006 0.001 0.002 0.001 0.003 0.001 0.001 0.001 0.221 0.003 0.123 0.482 31 Y 0.027 0.013 0.005 0.004 0.037 0.016 0.069 0.007 0.026 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.222 0.004 0.053 0.508 32 G 0.051 0.016 0.005 0.002 0.019 0.016 0.008 0.006 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.324 0.009 0.051 0.483 33 S 0.061 0.009 0.014 0.003 0.005 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.185 0.004 0.098 0.613 34 A 0.031 0.010 0.001 0.001 0.003 0.003 0.002 0.003 0.001 0.001 0.001 0.001 0.002 0.002 0.003 0.003 0.569 0.003 0.035 0.327 35 E 0.021 0.013 0.002 0.001 0.006 0.004 0.011 0.004 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.002 0.218 0.004 0.086 0.620 36 V 0.009 0.008 0.003 0.001 0.010 0.001 0.002 0.005 0.001 0.001 0.002 0.007 0.116 0.167 0.018 0.005 0.372 0.002 0.025 0.245 37 S 0.006 0.007 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.003 0.017 0.002 0.015 0.005 0.003 0.003 0.266 0.002 0.052 0.611 38 V 0.008 0.006 0.001 0.001 0.002 0.001 0.001 0.001 0.059 0.179 0.010 0.004 0.005 0.002 0.003 0.002 0.297 0.003 0.040 0.376 39 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 40 E 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.125 0.002 0.105 0.754 41 G 0.363 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.110 0.031 0.046 0.439 42 V 0.316 0.018 0.023 0.021 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.159 0.009 0.055 0.393 43 K 0.010 0.006 0.002 0.002 0.068 0.004 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.581 0.003 0.041 0.278 44 W 0.011 0.004 0.002 0.001 0.008 0.105 0.007 0.006 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.160 0.002 0.059 0.629 45 E 0.009 0.003 0.001 0.001 0.002 0.002 0.016 0.007 0.001 0.001 0.001 0.001 0.005 0.006 0.011 0.012 0.750 0.002 0.032 0.141 46 I 0.008 0.005 0.001 0.001 0.001 0.001 0.003 0.006 0.001 0.001 0.001 0.006 0.004 0.014 0.003 0.003 0.317 0.003 0.060 0.564 47 Y 0.005 0.005 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.003 0.012 0.006 0.012 0.005 0.012 0.006 0.613 0.004 0.059 0.252 48 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 49 N 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.161 0.004 0.154 0.645 50 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 51 V 0.027 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.051 0.008 0.306 0.593 52 A 0.193 0.045 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.071 0.008 0.212 0.462 53 R 0.023 0.416 0.001 0.001 0.002 0.004 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.132 0.003 0.035 0.370 54 R 0.046 0.309 0.006 0.001 0.009 0.029 0.013 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.091 0.011 0.065 0.407 55 F 0.046 0.423 0.003 0.001 0.001 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.260 0.009 0.022 0.228 56 M 0.054 0.293 0.009 0.001 0.001 0.001 0.015 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.379 0.013 0.035 0.196 57 I 0.012 0.277 0.017 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.404 0.004 0.027 0.250 58 F 0.006 0.184 0.002 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.665 0.003 0.009 0.112 59 E 0.016 0.189 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.004 0.009 0.005 0.523 0.006 0.032 0.204 60 I 0.021 0.210 0.010 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.006 0.009 0.007 0.008 0.421 0.008 0.028 0.264 61 F 0.018 0.227 0.008 0.001 0.001 0.001 0.001 0.001 0.005 0.007 0.003 0.003 0.011 0.006 0.005 0.008 0.351 0.010 0.024 0.311 62 S 0.035 0.170 0.004 0.001 0.001 0.001 0.001 0.001 0.010 0.010 0.004 0.003 0.006 0.005 0.004 0.003 0.239 0.020 0.039 0.446 63 K 0.065 0.110 0.014 0.001 0.001 0.001 0.001 0.001 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.090 0.023 0.069 0.615 64 R 0.066 0.083 0.012 0.001 0.001 0.001 0.001 0.001 0.006 0.002 0.002 0.001 0.003 0.001 0.001 0.001 0.069 0.027 0.120 0.602