# List of top-scoring protein chains for T0344.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nxmA 197 2.34e-01 b.82.1.1 86385 2frnA 278 2.81e+00 2c9yA 242 5.44e+00 1ak2 233 7.25e+00 1zin c.37.1.1,g.41.2.1 31894,45195 1ps2 60 8.69e+00 2pspA g.16.1.1 44746 1hi7A 60 9.42e+00 2pspA g.16.1.1 44744 1gyfA 62 9.53e+00 1gyfA d.76.1.1 39749 1wwrA 171 1.04e+01 1syxB 86 1.22e+01 1kngA 156 1.35e+01 c.47.1.10 72777 1wxxA 382 1.60e+01 1q8fA 313 1.72e+01 c.70.1.1 96203 1lxdA 100 2.09e+01 1lfdA d.15.1.5 37624 2gaxA 135 2.18e+01 2rgf 97 2.31e+01 1lfdA d.15.1.5 37627 2fug1 438 2.39e+01 2bepA 159 2.49e+01 1raxA 115 2.53e+01 1lfdA d.15.1.5 37626 1wvrA 221 2.62e+01 2hcyA 347 2.84e+01 1ylaA 202 2.96e+01 1aky 221 3.57e+01 1zin c.37.1.1,g.41.2.1 31896,45197 3aky 221 3.59e+01 1zin c.37.1.1,g.41.2.1 31898,45199 1xtnA 120 3.60e+01 1yyqA 374 4.21e+01 1gh6A 114 4.27e+01 a.2.3.1 65191 1y6iA 233 4.28e+01 1jfgA 374 4.29e+01 a.128.1.5 66636 1kiyA 374 4.31e+01 a.128.1.5 72555 2aelA 374 4.36e+01 1xteA 154 4.37e+01 1xpnA 170 4.41e+01 1q67A 231 4.46e+01 b.55.1.7 95960 3hck 107 4.65e+01 1lckA d.93.1.1 40495 1tmf2 267 4.71e+01 1aym2 1k7yA 577 4.79e+01 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 1h8gA 95 5.00e+01 b.109.1.1 65735 1mc7A 95 5.05e+01 b.36.1.1 91241 1ark 60 5.18e+01 1bb9 b.34.2.1 24473 2b2hA 399 5.34e+01 2bl7A 103 5.41e+01 2fhqA 141 5.52e+01 2sas 185 5.58e+01 2sas a.39.1.5 17258 1m2tB 263 5.61e+01 b.42.2.1,b.42.2.1 84762,84763 2bl8A 103 5.65e+01 1zakA 222 5.69e+01 1zin c.37.1.1,g.41.2.1 31913,45202 2awaA 390 5.85e+01 1ac0 108 5.91e+01 1kum b.3.1.1 22526 1jsg 114 6.11e+01 1a1x b.63.1.1 27513 1puuB 263 6.11e+01 b.42.2.1,b.42.2.1 104318,104319 2cp0A 95 6.15e+01 1gh9A 71 6.16e+01 1gh9A g.41.6.1 45266 1z5zA 271 6.62e+01 1msk 331 6.76e+01 1msk d.173.1.1 42495 1lfdA 87 6.81e+01 1lfdA d.15.1.5 37622 2grqA 161 6.85e+01 1b3sD 90 6.91e+01 1ay7B c.9.1.1 30846 1qhlA 227 7.03e+01 1qhlA c.37.1.12 32382 2bmlA 126 7.03e+01 2grrA 161 7.07e+01 1oqlB 263 7.10e+01 b.42.2.1,b.42.2.1 87307,87308 1hcxA 127 7.12e+01 b.109.1.1 65800 1oedE 260 7.12e+01 f.36.1.1 86915 1fxzA 476 7.26e+01 b.82.1.2,b.82.1.2 65059,65060 1ud1A 476 7.31e+01 b.82.1.2,b.82.1.2 99202,99203 1p5zB 263 7.38e+01 c.37.1.1 87815 1yhwA 297 7.39e+01 1ucxA 476 7.53e+01 b.82.1.2,b.82.1.2 99192,99193 1tme2 267 7.60e+01 1aym2 1cv8 174 7.77e+01 1cv8 d.3.1.1 37089 1whjA 102 7.80e+01 1z5sA 158 7.92e+01 1zo2A 129 7.92e+01 1kpsA 159 7.94e+01 d.20.1.1 68786 1u9aA 160 7.97e+01 1u9aA d.20.1.1 38333 1a3s 160 8.00e+01 1u9aA d.20.1.1 38335 2grnA 161 8.01e+01 2grpA 161 8.05e+01 2groA 161 8.10e+01 1gvmA 136 8.17e+01 b.109.1.1 70612 1onkB 263 8.18e+01 b.42.2.1,b.42.2.1 93360,93361 1q8bA 105 8.33e+01 d.58.4.6 96201 1yhvA 297 8.33e+01 1yxmA 303 8.38e+01 1yw6A 335 8.49e+01 2fa8A 105 8.68e+01 1x1xD 89 8.96e+01