# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nxmA 197 2.38e-01 b.82.1.1 86385 1tqzA 133 4.04e-01 3nul 130 1.08e+00 3nul d.110.1.1 40891 1z90A 469 1.71e+00 1wwrA 171 1.74e+00 1acf 125 2.79e+00 3nul d.110.1.1 40882 1m98A 317 3.37e+00 a.175.1.1,d.17.4.6 78866,78867 1xfsA 178 3.64e+00 d.129.3.5 109589 1ojqA 212 3.99e+00 d.166.1.1 93146 1u9aA 160 4.42e+00 1u9aA d.20.1.1 38333 2al2A 436 4.45e+00 2al1A 436 4.56e+00 1qipA 183 5.22e+00 1qipA d.32.1.1 38470 1woqA 267 5.29e+00 c.55.1.10,c.55.1.10 109462,109463 1q8bA 105 5.64e+00 d.58.4.6 96201 2grrA 161 5.66e+00 1u2cA 246 5.93e+00 b.1.6.2,d.272.1.1 107610,107611 1q8fA 313 6.01e+00 c.70.1.1 96203 1llnA 262 6.08e+00 d.165.1.1 84625 1df7A 159 6.38e+00 3dfr c.71.1.1 34885 1lcyA 325 6.78e+00 b.36.1.4,b.47.1.1 73834,73835 1khiA 176 6.82e+00 b.34.5.2,b.40.4.5 77408,77409 1juhA 350 7.21e+00 b.82.1.5 71884 2as0A 396 7.33e+00 1icfI 65 8.59e+00 1icfI g.28.1.1 44958 1s4bP 674 8.70e+00 d.92.1.5 105252 1oneA 436 9.01e+00 4enl c.1.11.1,d.54.1.1 29200,38844 2bepA 159 9.99e+00 2cr9A 139 1.01e+01 1yfuA 174 1.02e+01 2ffsA 157 1.05e+01 1vqoQ 96 1.09e+01 1w8oA 601 1.10e+01 1cojA 212 1.10e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 2avtA 378 1.10e+01 1cv8 174 1.11e+01 1cv8 d.3.1.1 37089 1a2pA 110 1.13e+01 1b20A d.1.1.2 36140 1eo1A 124 1.19e+01 1eo1A c.55.5.1 33739 1kyqA 274 1.19e+01 c.2.1.11,e.37.1.1 73281,73282 1f9zA 135 1.20e+01 1qipA d.32.1.1 38484 1khdA 345 1.24e+01 a.46.2.1,c.27.1.1 77400,77401 1fvuB 125 1.34e+01 1ixxB d.169.1.1 42346 1qcxA 359 1.38e+01 1qcxA b.80.1.2 28028 2gupA 292 1.41e+01 1pot 325 1.44e+01 1pot c.94.1.1 35807 1vplA 256 1.45e+01 1ri6A 343 1.46e+01 b.69.11.1 97503 1s6lA 212 1.46e+01 1ne8A 117 1.47e+01 b.34.6.2 80424 1pm3A 78 1.49e+01 b.41.1.2 94889 1lfdA 87 1.49e+01 1lfdA d.15.1.5 37622 1vmeA 410 1.54e+01 c.23.5.1,d.157.1.3 108893,108894 2cn3A 737 1.55e+01 1mxgA 435 1.56e+01 b.71.1.1,c.1.8.1 85193,85194 1fjgE 162 1.58e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1tq5A 242 1.59e+01 2bryA 497 1.62e+01 1xtoA 311 1.63e+01 1nziA 159 1.63e+01 b.23.1.1,g.3.11.1 86449,86450 1tzfA 259 1.66e+01 c.68.1.13 107476 1dq3A 454 1.66e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1xrtA 467 1.70e+01 1z7gA 217 1.74e+01 2fuvA 549 1.75e+01 1qv1A 195 1.76e+01 a.39.1.5 96347 2frnA 278 1.78e+01 2pia 321 1.83e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1zn6A 227 1.87e+01 1zo2A 129 1.90e+01 1dynA 125 1.95e+01 1dynA b.55.1.1 26955 2c4bA 143 1.95e+01 1ijtA 128 1.99e+01 1bfg b.42.1.1 62510 1w2lA 99 2.13e+01 2d93A 134 2.17e+01 1j1qA 261 2.22e+01 d.165.1.1 90768 2cy2A 174 2.27e+01 1eaxA 241 2.30e+01 b.47.1.2 64889 1zc3B 113 2.32e+01 1syxB 86 2.34e+01 1txkA 498 2.48e+01 b.1.18.2,b.30.5.9 107425,107426 1lvmA 229 2.50e+01 b.47.1.3 78243 2biwA 490 2.52e+01 2d7nA 93 2.58e+01 2gaxA 135 2.64e+01 1mugA 168 2.68e+01 1mugA c.18.1.2 31030 1llp 343 2.70e+01 1arv a.93.1.1 18578 1uq5A 263 2.70e+01 d.165.1.1 99778 1vpkA 378 2.76e+01 1h8eD 482 2.78e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 2gjdA 157 2.80e+01 1lvoA 302 2.82e+01 b.47.1.4 74284 1qwkA 317 2.85e+01 c.1.7.1 96482 1npsA 88 2.85e+01 1prs b.11.1.1 23622 1o12A 376 2.86e+01 b.92.1.5,c.1.9.10 80758,80759 1vzqH 250 2.87e+01 2fymA 431 2.88e+01 1a62 130 2.90e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 2cf8H 257 2.90e+01 1vqoW 154 2.90e+01 1zt3A 80 2.94e+01 1n7zA 334 2.97e+01 b.127.1.1 85380 1q1uA 144 2.98e+01 b.42.1.1 95608 1qz8A 113 2.99e+01 b.140.1.1 96619 1h6hA 143 3.06e+01 d.189.1.1 65681 1ysqA 193 3.11e+01 1m1fA 110 3.19e+01 b.34.6.2 78401 1ctt 294 3.20e+01 1ctt c.97.1.1,c.97.1.1 36022,36023 1j9lA 247 3.24e+01 c.106.1.1 62762 1i3zA 103 3.38e+01 d.93.1.1 83667 1p5zB 263 3.39e+01 c.37.1.1 87815 1yovA 537 3.43e+01 1yopA 83 3.47e+01 1h0hB 214 3.47e+01 d.58.1.5 76437 1k7cA 233 3.52e+01 c.23.10.4 68267 1p6oA 161 3.55e+01 c.97.1.2 94185 1jf9A 408 3.56e+01 1c0nA c.67.1.3 62931 2fa8A 105 3.59e+01 1f89A 291 3.60e+01 d.160.1.1 64988 1vf8A 377 3.73e+01 1olzA 663 3.77e+01 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1qwyA 291 3.80e+01 b.84.3.2 96509 2cdcA 366 3.90e+01 1qy6A 274 3.90e+01 b.47.1.1 96574 1t0pB 86 3.91e+01 1vr3A 191 4.09e+01 1mvfD 82 4.11e+01 b.129.1.1 85143 2ck3D 482 4.15e+01 1ts9A 102 4.19e+01 1cjxA 357 4.32e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1jtdB 273 4.33e+01 b.69.5.2 67265 1o97C 264 4.35e+01 c.26.2.3 81232 1wz4A 23 4.44e+01 1o5uA 101 4.45e+01 b.82.1.8 92518 2cz1A 206 4.53e+01 1h8dH 260 4.54e+01 5ptp 2gzqA 200 4.59e+01 1j58A 385 4.62e+01 b.82.1.2 71531 1qk7A 32 4.72e+01 1qk7A g.3.6.2 44116 1q67A 231 4.75e+01 b.55.1.7 95960 1g24A 211 4.85e+01 1g24A d.166.1.1 42270 1gh9A 71 4.87e+01 1gh9A g.41.6.1 45266 1fzvA 132 4.91e+01 1vpfA g.17.1.1 60159 1b35A 260 4.92e+01 1b35A b.121.4.1 23333 1vrtA 560 4.93e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 1cruA 454 4.99e+01 1c9uA b.68.2.1 27617 1vkdA 338 5.06e+01 b.67.2.4 108644 1ecsA 126 5.11e+01 1ecsA d.32.1.2 59407 1x31C 206 5.16e+01 1ym0A 238 5.18e+01 1rypH 205 5.23e+01 d.153.1.4 41876 1l8bA 190 5.30e+01 d.86.1.1 73683 1yhfA 115 5.34e+01 1z1zA 131 5.35e+01 2f4wA 187 5.39e+01 2ftwA 521 5.40e+01 1gouA 116 5.42e+01 d.1.1.2 65429 1cyx 205 5.46e+01 1cyx b.6.1.2 23023 2exnA 136 5.50e+01 1kjkA 64 5.50e+01 d.10.1.4 72613 2c27A 315 5.51e+01 2fp8A 322 5.57e+01 1q0qA 406 5.57e+01 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1ihkA 174 5.59e+01 1bfg b.42.1.1 62384 1dx5I 118 5.60e+01 1dx5I g.3.11.1,g.3.11.1,g.3.11.1 44302,44303,44304 1ca1 370 5.62e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 2f0aA 98 5.71e+01 1jmsA 381 5.83e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 2cr4A 126 5.90e+01 1rb9 53 5.91e+01 1rb9 g.41.5.1 45214 2gfaA 119 5.92e+01 1dytA 133 5.96e+01 7rsa d.5.1.1 37288 1wiwA 290 6.03e+01 1zgkA 308 6.06e+01 2rmcA 182 6.06e+01 2cpl b.62.1.1 27491 2biqA 219 6.07e+01 1vqoU 66 6.15e+01 1v0aA 178 6.18e+01 2al3A 90 6.21e+01 1t44G 147 6.21e+01 d.109.1.1 106395 1d4xG 126 6.22e+01 1d0nA d.109.1.1 59109 1gy7A 125 6.23e+01 d.17.4.2 70738 1xer 103 6.25e+01 1xer d.58.1.3 38990 7ahlA 293 6.30e+01 7ahlA f.6.1.1 43812 1dp4A 435 6.30e+01 1dp4A c.93.1.1 35710 1dwnA 127 6.35e+01 1dwnA d.85.1.1 40141 1rzhH 260 6.36e+01 b.41.1.1,f.23.10.1 98162,98163 1ywfA 296 6.42e+01 1uxxX 133 6.50e+01 b.18.1.10 100169 1xuvA 178 6.54e+01 1aa6 715 6.57e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1q8iA 783 6.57e+01 c.55.3.5,e.8.1.1 96208,96209 2cw9A 194 6.59e+01 1tedA 393 6.60e+01 c.95.1.2 106807 1ljoA 77 6.62e+01 b.38.1.1 73941 1ww9A 392 6.63e+01 1g0oA 283 6.67e+01 1ybvA c.2.1.2 60181 1hd2A 161 6.68e+01 c.47.1.10 60962 1dkzA 219 6.71e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 2agyA 361 6.74e+01 2ge3A 170 6.81e+01 1tc1A 220 6.81e+01 1tc1A c.61.1.1 34083 1jatA 155 6.92e+01 1u9aA d.20.1.1 62818 1noyA 388 6.94e+01 1clqA c.55.3.5 33713 1t7vA 278 6.97e+01 1mml 265 6.98e+01 1mml e.8.1.2 43015 1w9iA 770 7.05e+01 1s5aA 150 7.11e+01 d.17.4.10 98525 1voqa 90 7.13e+01 1ccr 112 7.17e+01 1ycc a.3.1.1 15877 1w2fA 276 7.19e+01 d.143.1.3 109125 1zhhB 242 7.25e+01 1feuA 206 7.27e+01 1feuA b.53.1.1 59801 2iv2X 715 7.35e+01 2f5tX 233 7.44e+01 1jmuB 666 7.47e+01 1lkkA 105 7.52e+01 1lckA d.93.1.1 40412 1r45A 204 7.56e+01 2aa4A 289 7.63e+01 1ydwA 362 7.66e+01 1ycsB 239 7.70e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1q5hA 147 7.70e+01 b.85.4.1 95893 2fqpA 97 7.73e+01 1o0xA 262 7.75e+01 d.127.1.1 80755 2bjbA 462 7.80e+01 2gdnA 267 7.86e+01 1w7jA 795 7.96e+01 1kyfA 247 7.97e+01 b.1.10.1,d.105.1.1 73220,73221 1bu6O 501 7.97e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1lk2A 274 8.00e+01 b.1.1.2,d.19.1.1 91056,91057 1zc1A 208 8.14e+01 1i1qB 192 8.22e+01 1qdlB c.23.16.1 61544 1dgwX 79 8.29e+01 1caxB b.82.1.2 28091 1azsA 220 8.34e+01 1azsA d.58.29.1 39416 1wba 175 8.37e+01 1wba b.42.4.1 25591 1g5aA 628 8.41e+01 b.71.1.1,c.1.8.1 65152,65153 1p5tA 127 8.45e+01 b.55.1.2 94148 2cohA 202 8.73e+01 1u00A 227 8.74e+01 1vk0A 206 8.75e+01 c.55.3.5 100839 1khoA 370 8.77e+01 a.124.1.1,b.12.1.3 72489,72490 1i12A 160 8.83e+01 1i21A d.108.1.1 61515 2cz1B 212 8.92e+01 1gl4B 98 8.92e+01 b.1.1.4 65288 2gwdA 449 8.93e+01