# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nxmA 197 3.53e-02 b.82.1.1 86385 1tqzA 133 7.63e-01 3nul 130 1.31e+00 3nul d.110.1.1 40891 1z90A 469 1.74e+00 1wwrA 171 2.19e+00 1acf 125 2.66e+00 3nul d.110.1.1 40882 1lfdA 87 2.98e+00 1lfdA d.15.1.5 37622 1llnA 262 4.09e+00 d.165.1.1 84625 1q8fA 313 4.34e+00 c.70.1.1 96203 1oneA 436 4.77e+00 4enl c.1.11.1,d.54.1.1 29200,38844 2al2A 436 4.77e+00 2al1A 436 4.78e+00 2gupA 292 6.58e+00 1u9aA 160 7.11e+00 1u9aA d.20.1.1 38333 2grrA 161 7.13e+00 1q8bA 105 7.17e+00 d.58.4.6 96201 1eo1A 124 7.80e+00 1eo1A c.55.5.1 33739 1xfsA 178 8.23e+00 d.129.3.5 109589 1ri6A 343 8.31e+00 b.69.11.1 97503 1f9zA 135 1.00e+01 1qipA d.32.1.1 38484 1qipA 183 1.05e+01 1qipA d.32.1.1 38470 2ffsA 157 1.11e+01 1juhA 350 1.16e+01 b.82.1.5 71884 1qy6A 274 1.17e+01 b.47.1.1 96574 2cr9A 139 1.19e+01 1m98A 317 1.21e+01 a.175.1.1,d.17.4.6 78866,78867 1w8oA 601 1.27e+01 1ww9A 392 1.41e+01 1wfyA 104 1.41e+01 1icfI 65 1.47e+01 1icfI g.28.1.1 44958 1qz8A 113 1.53e+01 b.140.1.1 96619 1ne8A 117 1.55e+01 b.34.6.2 80424 1s4bP 674 1.56e+01 d.92.1.5 105252 1dx5I 118 1.57e+01 1dx5I g.3.11.1,g.3.11.1,g.3.11.1 44302,44303,44304 1pm3A 78 1.64e+01 b.41.1.2 94889 2cy2A 174 1.66e+01 1s5aA 150 1.67e+01 d.17.4.10 98525 2as0A 396 1.71e+01 1lcyA 325 1.77e+01 b.36.1.4,b.47.1.1 73834,73835 1n7zA 334 1.81e+01 b.127.1.1 85380 1xrtA 467 1.83e+01 1woqA 267 1.83e+01 c.55.1.10,c.55.1.10 109462,109463 2bryA 497 1.84e+01 1pot 325 1.88e+01 1pot c.94.1.1 35807 1vmeA 410 2.04e+01 c.23.5.1,d.157.1.3 108893,108894 1kyqA 274 2.07e+01 c.2.1.11,e.37.1.1 73281,73282 1q67A 231 2.20e+01 b.55.1.7 95960 1zt3A 80 2.23e+01 1df7A 159 2.25e+01 3dfr c.71.1.1 34885 2fhfA 1083 2.26e+01 1tq5A 242 2.29e+01 1yovA 537 2.31e+01 2biiA 424 2.36e+01 2bepA 159 2.40e+01 1m1fA 110 2.42e+01 b.34.6.2 78401 1o5uA 101 2.44e+01 b.82.1.8 92518 1fvuB 125 2.47e+01 1ixxB d.169.1.1 42346 1vplA 256 2.49e+01 2cn3A 737 2.64e+01 1i3zA 103 2.64e+01 d.93.1.1 83667 1j1qA 261 2.71e+01 d.165.1.1 90768 1xtoA 311 2.75e+01 1cv8 174 2.78e+01 1cv8 d.3.1.1 37089 1w2lA 99 2.80e+01 2frnA 278 2.86e+01 1p5zB 263 2.95e+01 c.37.1.1 87815 2d7nA 93 3.05e+01 1fzvA 132 3.08e+01 1vpfA g.17.1.1 60159 1u2cA 246 3.10e+01 b.1.6.2,d.272.1.1 107610,107611 2f0aA 98 3.17e+01 1cojA 212 3.31e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1g5aA 628 3.36e+01 b.71.1.1,c.1.8.1 65152,65153 1lvmA 229 3.37e+01 b.47.1.3 78243 1qwyA 291 3.42e+01 b.84.3.2 96509 1h0hB 214 3.45e+01 d.58.1.5 76437 2fp8A 322 3.46e+01 1s6lA 212 3.51e+01 1cruA 454 3.51e+01 1c9uA b.68.2.1 27617 1txkA 498 3.51e+01 b.1.18.2,b.30.5.9 107425,107426 1pxvA 183 3.53e+01 d.3.1.1 95301 1mvfD 82 3.54e+01 b.129.1.1 85143 1zn6A 227 3.57e+01 2avtA 378 3.59e+01 1o97C 264 3.60e+01 c.26.2.3 81232 1npsA 88 3.61e+01 1prs b.11.1.1 23622 1ym0A 238 3.68e+01 1a62 130 3.70e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1iuaA 83 3.71e+01 g.35.1.1 71438 1a2pA 110 3.75e+01 1b20A d.1.1.2 36140 1z7gA 217 3.75e+01 1cyx 205 3.75e+01 1cyx b.6.1.2 23023 1qv1A 195 3.78e+01 a.39.1.5 96347 1y4hA 188 3.78e+01 1mxgA 435 3.78e+01 b.71.1.1,c.1.8.1 85193,85194 2gwdA 449 3.99e+01 1um5H 217 4.05e+01 2c4bA 143 4.13e+01 1fjgE 162 4.20e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1zgkA 308 4.20e+01 2cw9A 194 4.37e+01 2gjdA 157 4.38e+01 1o12A 376 4.39e+01 b.92.1.5,c.1.9.10 80758,80759 1rypH 205 4.40e+01 d.153.1.4 41876 1h6hA 143 4.43e+01 d.189.1.1 65681 1jtdB 273 4.49e+01 b.69.5.2 67265 1syxB 86 4.55e+01 1ojqA 212 4.66e+01 d.166.1.1 93146 1gh9A 71 4.81e+01 1gh9A g.41.6.1 45266 2fymA 431 4.86e+01 2ck3D 482 4.87e+01 1nziA 159 4.88e+01 b.23.1.1,g.3.11.1 86449,86450 1wvqA 167 4.91e+01 1zc1A 208 4.95e+01 2bf6A 449 4.97e+01 2ftwA 521 5.00e+01 1qcxA 359 5.08e+01 1qcxA b.80.1.2 28028 1mugA 168 5.11e+01 1mugA c.18.1.2 31030 1ctt 294 5.22e+01 1ctt c.97.1.1,c.97.1.1 36022,36023 1j4aA 333 5.24e+01 c.2.1.4,c.23.12.1 71502,71503 1khiA 176 5.34e+01 b.34.5.2,b.40.4.5 77408,77409 1vpkA 378 5.36e+01 1ql0A 241 5.37e+01 1qaeA d.4.1.2 37139 1aky 221 5.39e+01 1zin c.37.1.1,g.41.2.1 31896,45197 2biqA 219 5.52e+01 2ai4A 119 5.54e+01 2gdqA 382 5.55e+01 1yfuA 174 5.55e+01 1ccr 112 5.65e+01 1ycc a.3.1.1 15877 2pia 321 5.70e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1uq5A 263 5.73e+01 d.165.1.1 99778 1vkdA 338 5.92e+01 b.67.2.4 108644 1tzfA 259 5.93e+01 c.68.1.13 107476 1esc 306 5.94e+01 1esc c.23.10.1 31334 1z3qA 200 5.99e+01 1w9iA 770 6.02e+01 2fuvA 549 6.03e+01 1llp 343 6.07e+01 1arv a.93.1.1 18578 1gy7A 125 6.09e+01 d.17.4.2 70738 1khdA 345 6.16e+01 a.46.2.1,c.27.1.1 77400,77401 2cz1A 206 6.24e+01 1jmxB 349 6.25e+01 b.69.2.2 66906 1ufkA 254 6.28e+01 c.66.1.39 99340 2d93A 134 6.28e+01 1f89A 291 6.29e+01 d.160.1.1 64988 1jmcA 246 6.30e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 1gpeA 587 6.34e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1olzA 663 6.34e+01 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1ty0A 211 6.42e+01 b.40.2.2,d.15.6.1 107440,107441 2fa8A 105 6.50e+01 1vzwA 244 6.74e+01 1zc3B 113 6.85e+01 1vqoQ 96 6.98e+01 1b35A 260 7.02e+01 1b35A b.121.4.1 23333 1lkkA 105 7.06e+01 1lckA d.93.1.1 40412 1vf8A 377 7.30e+01 1n3yA 198 7.32e+01 c.62.1.1 79976 1t0pB 86 7.40e+01 1p6oA 161 7.43e+01 c.97.1.2 94185 1bu6O 501 7.45e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1jatA 155 7.52e+01 1u9aA d.20.1.1 62818 1vmfA 145 7.52e+01 1vr3A 191 7.58e+01 1nszA 347 7.60e+01 b.30.5.4 80724 1tedA 393 7.67e+01 c.95.1.2 106807 1pk6A 133 7.70e+01 b.22.1.1 94801 1dytA 133 7.82e+01 7rsa d.5.1.1 37288 1wm1A 317 7.82e+01 c.69.1.7 109405 1wiwA 290 7.82e+01 1wba 175 7.97e+01 1wba b.42.4.1 25591 1z1zA 131 7.98e+01 2a6hC 1119 8.06e+01 2c27A 315 8.21e+01 1ug6A 431 8.25e+01 c.1.8.4 88490 1thqA 170 8.25e+01 f.4.1.2 106920 1dynA 125 8.30e+01 1dynA b.55.1.1 26955 1noyA 388 8.37e+01 1clqA c.55.3.5 33713 2bjbA 462 8.41e+01 2biwA 490 8.41e+01 2gnrA 145 8.42e+01 1vrtA 560 8.42e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 1khoA 370 8.45e+01 a.124.1.1,b.12.1.3 72489,72490 2fqpA 97 8.54e+01 1wi0A 113 8.82e+01 1dkzA 219 8.82e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1dq3A 454 8.86e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1zo2A 129 8.86e+01 1so7A 382 8.89e+01 2ac0A 200 8.90e+01 1nezG 128 8.90e+01 b.1.1.1 85592 1vqoU 66 8.94e+01 1iv8A 720 8.97e+01 b.71.1.1,c.1.8.1 76842,76843 1rzhH 260 9.00e+01 b.41.1.1,f.23.10.1 98162,98163