# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gaxA 135 1.24e+00 1cewI 108 1.54e+00 1cewI d.17.1.2 37999 1tqzA 133 1.64e+00 1eo1A 124 1.78e+00 1eo1A c.55.5.1 33739 1syxB 86 1.96e+00 1vqoW 154 2.44e+00 1q8fA 313 3.78e+00 c.70.1.1 96203 2ethA 154 5.58e+00 1lfdA 87 5.62e+00 1lfdA d.15.1.5 37622 1wwrA 171 6.22e+00 1tuwA 109 7.43e+00 d.58.4.8 107346 1q67A 231 7.80e+00 b.55.1.7 95960 1gh9A 71 8.16e+00 1gh9A g.41.6.1 45266 2fa8A 105 8.49e+00 1ufkA 254 1.01e+01 c.66.1.39 99340 1cv8 174 1.10e+01 1cv8 d.3.1.1 37089 6ldh 330 1.19e+01 3ldh c.2.1.5,d.162.1.1 30161,42128 1ug6A 431 1.21e+01 c.1.8.4 88490 2bjbA 462 1.37e+01 1wz4A 23 1.38e+01 2fhqA 141 1.41e+01 1wvqA 167 1.48e+01 2cz1A 206 1.50e+01 1zt3A 80 1.57e+01 1ay7B 89 1.64e+01 1ay7B c.9.1.1 30836 1pbyC 79 1.78e+01 a.137.9.1 94423 1yxmA 303 1.79e+01 1x3kA 152 1.80e+01 1z5zA 271 1.97e+01 1nnwA 252 2.00e+01 d.159.1.5 80674 1aky 221 2.02e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1q8bA 105 2.21e+01 d.58.4.6 96201 1vzwA 244 2.41e+01 1s6lA 212 2.52e+01 1fjgE 162 2.60e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1nnxA 109 2.70e+01 b.40.10.1 92013 2ffsA 157 2.74e+01 1df7A 159 2.82e+01 3dfr c.71.1.1 34885 2ai4A 119 2.83e+01 1ccr 112 2.92e+01 1ycc a.3.1.1 15877 1dgwX 79 2.96e+01 1caxB b.82.1.2 28091 1iz6A 138 3.12e+01 b.34.5.2,b.40.4.5 76976,76977 1mv4A 37 3.26e+01 h.1.5.1 79496 2h88A 621 3.27e+01 1vdlA 80 3.29e+01 a.5.2.1 108528 1wstA 417 3.32e+01 2d7nA 93 3.41e+01 1v65A 64 3.45e+01 a.212.1.1 108393 1m2tB 263 3.63e+01 b.42.2.1,b.42.2.1 84762,84763 1doi 128 3.65e+01 1awd d.15.4.1 37676 2avtA 378 3.75e+01 1a7i 81 3.80e+01 1b8tA g.39.1.3,g.39.1.3 45143,45144 1wxxA 382 3.81e+01 2fbwA 621 3.97e+01 1umdA 367 4.02e+01 c.36.1.11 99599 1pm3A 78 4.28e+01 b.41.1.2 94889 2h6dA 276 4.30e+01 1l2wI 69 4.33e+01 d.198.1.1 73526 2f0aA 98 4.33e+01 1qqp3 220 4.45e+01 1qqp3 1v37A 177 4.49e+01 1gy7A 125 4.52e+01 d.17.4.2 70738 1kyqA 274 4.57e+01 c.2.1.11,e.37.1.1 73281,73282 1pbyB 337 4.74e+01 b.69.2.2 94422 1ruwA 69 5.01e+01 1wfyA 104 5.23e+01 1ghhA 81 5.31e+01 1ghhA d.57.1.1 38940 1n7zA 334 5.49e+01 b.127.1.1 85380 1vqoU 66 5.57e+01 1kexA 155 5.58e+01 b.18.1.2 77350 1nh0A 99 5.69e+01 b.50.1.1 91869 1wm1A 317 5.80e+01 c.69.1.7 109405 1icfI 65 5.96e+01 1icfI g.28.1.1 44958 1rb9 53 6.02e+01 1rb9 g.41.5.1 45214 1nnvA 110 6.18e+01 d.17.7.1 92012 2c31A 568 6.28e+01 1yqfA 203 6.31e+01 2sn3 65 6.32e+01 1aho g.3.7.1 44120 1o12A 376 6.36e+01 b.92.1.5,c.1.9.10 80758,80759 1euwA 152 6.37e+01 1dupA b.85.4.1 28349 1iuaA 83 6.38e+01 g.35.1.1 71438 1cs8A 316 6.44e+01 1cs8A d.3.1.1 37065 1yn8A 59 6.48e+01 1rdg 53 6.55e+01 1rb9 g.41.5.1 45221 1umwA 237 6.82e+01 d.223.1.2,d.223.1.2 99631,99632 1k47A 337 6.83e+01 d.14.1.5,d.58.26.4 72040,72041 2c7xA 436 6.89e+01 1ukuA 102 6.91e+01 d.58.5.2 99533 1hy9A 41 7.00e+01 1hy9A g.3.17.1 61398 1qtnA 164 7.01e+01 1pauA c.17.1.1 30999 1gweA 503 7.04e+01 e.5.1.1 70667 1xteA 154 7.06e+01 1kmvA 186 7.08e+01 c.71.1.1 72757 2ghpA 292 7.22e+01 1tw7A 99 7.30e+01 2d93A 134 7.39e+01 1x0hA 112 7.42e+01 1l1sA 113 7.50e+01 c.114.1.1 73484 1zgoA 223 7.53e+01 1owxA 121 7.60e+01 d.58.7.1 87494 1hdlA 55 7.64e+01 g.68.1.2 65808 1m9xC 146 7.64e+01 a.73.1.1 84907 1q6uA 245 7.65e+01 d.26.1.1 95998 1iieA 75 7.95e+01 1iieA a.109.1.1 19039 1lkdA 297 7.98e+01 d.32.1.3,d.32.1.3 78059,78060 1feuA 206 8.00e+01 1feuA b.53.1.1 59801 2avdA 219 8.09e+01 1yp5A 58 8.13e+01 2c55A 52 8.23e+01 1ku3A 73 8.24e+01 a.4.13.2 73000 1i3zA 103 8.37e+01 d.93.1.1 83667 2d2mC 147 8.75e+01 1khiA 176 8.81e+01 b.34.5.2,b.40.4.5 77408,77409 1npsA 88 8.82e+01 1prs b.11.1.1 23622 2ctuA 73 8.92e+01