Best Alignments for T0344

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1nxmA/T0344-1nxmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1nxmA/T0344-1nxmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.1874e-019.76e+01 b.82.1.1
2awaA/T0344-2awaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2awaA/T0344-2awaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1081e+009.22e-01
1ak2/T0344-1ak2-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ak2/T0344-1ak2-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.7800e+001.25e+03 1zin c.37.1.1
g.41.2.1
1ps2/T0344-1ps2-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ps2/T0344-1ps2-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.1500e+002.57e+02 2pspA g.16.1.1
1qipA/T0344-1qipA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qipA/T0344-1qipA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0173e+019.15e-01 1qipA d.32.1.1
1wwrA/T0344-1wwrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wwrA/T0344-1wwrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0444e+018.86e+00
1tqzA/T0344-1tqzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tqzA/T0344-1tqzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1353e+011.37e-01
2c9yA/T0344-2c9yA-t04-local-adpstyle1.a2m 2c9yA/T0344-2c9yA-t04-local-adpstyle1.al 1.2048e+013.32e+01
1eo1A/T0344-1eo1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1eo1A/T0344-1eo1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2159e+011.79e-02 1eo1A c.55.5.1
1q8bA/T0344-1q8bA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1q8bA/T0344-1q8bA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4530e+012.72e-01 d.58.4.6

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001