# TARGET T0344 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0344.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 2.37146 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 L 0.440 0.009 0.016 0.013 0.103 0.418 2 I 0.844 0.014 0.009 0.011 0.038 0.085 3 I 0.811 0.013 0.008 0.006 0.048 0.114 4 G 0.591 0.012 0.012 0.004 0.126 0.254 5 L 0.501 0.011 0.006 0.002 0.145 0.336 6 P 0.515 0.005 0.017 0.002 0.142 0.321 7 R 0.647 0.006 0.018 0.002 0.132 0.196 8 Y 0.843 0.004 0.011 0.002 0.052 0.088 9 M 0.927 0.003 0.003 0.002 0.021 0.045 10 E 0.958 0.001 0.001 0.002 0.012 0.028 11 V 0.968 0.002 0.001 0.001 0.006 0.023 12 N 0.953 0.002 0.001 0.001 0.012 0.032 13 I 0.893 0.013 0.001 0.001 0.051 0.042 14 K 0.451 0.008 0.003 0.001 0.499 0.037 15 D 0.132 0.004 0.005 0.002 0.806 0.051 16 G 0.096 0.004 0.005 0.001 0.834 0.059 17 K 0.636 0.031 0.003 0.001 0.233 0.096 18 I 0.839 0.029 0.002 0.002 0.073 0.054 19 I 0.767 0.021 0.003 0.003 0.125 0.080 20 G 0.552 0.007 0.012 0.005 0.247 0.177 21 R 0.648 0.014 0.007 0.003 0.153 0.175 22 S 0.558 0.031 0.007 0.004 0.104 0.296 23 L 0.384 0.118 0.009 0.004 0.131 0.354 24 D 0.153 0.047 0.007 0.002 0.438 0.352 25 P 0.024 0.007 0.108 0.008 0.764 0.089 26 R 0.024 0.004 0.107 0.008 0.795 0.062 27 E 0.033 0.007 0.125 0.008 0.778 0.049 28 G 0.087 0.013 0.045 0.006 0.629 0.219 29 G 0.269 0.067 0.038 0.005 0.261 0.360 30 L 0.577 0.036 0.034 0.005 0.176 0.171 31 Y 0.646 0.012 0.020 0.003 0.124 0.195 32 G 0.618 0.005 0.014 0.002 0.136 0.225 33 S 0.777 0.005 0.005 0.002 0.070 0.140 34 A 0.889 0.005 0.004 0.002 0.032 0.068 35 E 0.918 0.005 0.002 0.002 0.023 0.051 36 V 0.895 0.006 0.002 0.002 0.021 0.075 37 S 0.749 0.011 0.002 0.002 0.048 0.188 38 V 0.507 0.031 0.004 0.001 0.209 0.248 39 P 0.166 0.010 0.018 0.001 0.681 0.124 40 E 0.077 0.002 0.028 0.002 0.792 0.099 41 G 0.221 0.004 0.017 0.001 0.652 0.104 42 V 0.790 0.014 0.002 0.001 0.080 0.113 43 K 0.920 0.008 0.001 0.001 0.015 0.055 44 W 0.945 0.003 0.002 0.001 0.013 0.036 45 E 0.933 0.003 0.002 0.002 0.016 0.044 46 I 0.868 0.009 0.004 0.004 0.029 0.085 47 Y 0.469 0.013 0.004 0.009 0.195 0.311 48 P 0.115 0.008 0.005 0.036 0.282 0.553 49 N 0.037 0.009 0.011 0.130 0.390 0.423 50 P 0.015 0.006 0.040 0.720 0.169 0.049 51 V 0.012 0.004 0.068 0.798 0.087 0.032 52 A 0.030 0.007 0.097 0.748 0.091 0.026 53 R 0.044 0.004 0.059 0.785 0.071 0.037 54 R 0.080 0.003 0.028 0.735 0.092 0.062 55 F 0.183 0.003 0.017 0.591 0.127 0.078 56 M 0.422 0.004 0.008 0.451 0.065 0.050 57 I 0.445 0.002 0.004 0.506 0.023 0.020 58 F 0.457 0.001 0.005 0.506 0.018 0.014 59 E 0.479 0.001 0.002 0.488 0.014 0.016 60 I 0.547 0.003 0.003 0.343 0.029 0.075 61 F 0.470 0.008 0.005 0.210 0.083 0.225 62 S 0.252 0.009 0.006 0.093 0.123 0.517 63 K 0.089 0.010 0.007 0.033 0.132 0.730 64 R 0.035 0.005 0.002 0.008 0.080 0.869