# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3nul 130 8.21e-01 3nul d.110.1.1 40891 1tqzA 133 1.16e+00 1nxmA 197 1.74e+00 b.82.1.1 86385 2al2A 436 2.63e+00 2al1A 436 2.71e+00 2awaA 390 2.76e+00 1acf 125 2.83e+00 3nul d.110.1.1 40882 1lcyA 325 3.15e+00 b.36.1.4,b.47.1.1 73834,73835 1wwrA 171 3.82e+00 1ue1A 164 4.23e+00 b.40.4.3 99243 4enl 436 4.54e+00 4enl c.1.11.1,d.54.1.1 29202,38846 1woqA 267 4.92e+00 c.55.1.10,c.55.1.10 109462,109463 1oneA 436 5.37e+00 4enl c.1.11.1,d.54.1.1 29200,38844 1llnA 262 6.03e+00 d.165.1.1 84625 1itwA 741 6.56e+00 c.77.1.2 76793 1xfsA 178 6.80e+00 d.129.3.5 109589 1q8fA 313 6.90e+00 c.70.1.1 96203 1z90A 469 7.51e+00 2avtA 378 7.73e+00 1ysqA 193 8.67e+00 1eur 365 9.25e+00 1eut b.68.1.1 27607 1u9aA 160 9.30e+00 1u9aA d.20.1.1 38333 1qipA 183 9.32e+00 1qipA d.32.1.1 38470 2as0A 396 1.00e+01 1fa8A 135 1.11e+01 1qipA d.32.1.1 38486 1ojqA 212 1.21e+01 d.166.1.1 93146 1qy6A 274 1.27e+01 b.47.1.1 96574 2ffsA 157 1.32e+01 1s4bP 674 1.32e+01 d.92.1.5 105252 1f9zA 135 1.34e+01 1qipA d.32.1.1 38484 1icfI 65 1.35e+01 1icfI g.28.1.1 44958 1kyqA 274 1.39e+01 c.2.1.11,e.37.1.1 73281,73282 2grrA 161 1.40e+01 1tzfA 259 1.43e+01 c.68.1.13 107476 2fymA 431 1.45e+01 1khdA 345 1.46e+01 a.46.2.1,c.27.1.1 77400,77401 1h8gA 95 1.54e+01 b.109.1.1 65735 2fa8A 105 1.56e+01 1cojA 212 1.57e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 2frnA 278 1.59e+01 1qcxA 359 1.69e+01 1qcxA b.80.1.2 28028 1fjgE 162 1.74e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1pm3A 78 1.75e+01 b.41.1.2 94889 1q67A 231 1.75e+01 b.55.1.7 95960 2gupA 292 1.77e+01 1eo1A 124 1.81e+01 1eo1A c.55.5.1 33739 1h6hA 143 1.81e+01 d.189.1.1 65681 1pot 325 1.81e+01 1pot c.94.1.1 35807 1a2pA 110 1.83e+01 1b20A d.1.1.2 36140 1lfdA 87 1.85e+01 1lfdA d.15.1.5 37622 1df7A 159 1.87e+01 3dfr c.71.1.1 34885 1vplA 256 1.87e+01 1ri6A 343 1.91e+01 b.69.11.1 97503 2cn3A 737 2.02e+01 1ne8A 117 2.02e+01 b.34.6.2 80424 1m98A 317 2.03e+01 a.175.1.1,d.17.4.6 78866,78867 1sqjA 789 2.13e+01 b.69.13.1,b.69.13.1 105918,105919 1o97C 264 2.14e+01 c.26.2.3 81232 2d93A 134 2.18e+01 1fzvA 132 2.20e+01 1vpfA g.17.1.1 60159 1vmeA 410 2.24e+01 c.23.5.1,d.157.1.3 108893,108894 1w8oA 601 2.30e+01 1gyfA 62 2.32e+01 1gyfA d.76.1.1 39749 1wcqA 601 2.33e+01 1o12A 376 2.36e+01 b.92.1.5,c.1.9.10 80758,80759 1q8bA 105 2.37e+01 d.58.4.6 96201 1yh6A 179 2.48e+01 1s6lA 212 2.57e+01 1j1qA 261 2.58e+01 d.165.1.1 90768 1zn6A 227 2.59e+01 2bryA 497 2.71e+01 1zo2A 129 2.74e+01 1syxB 86 2.78e+01 1z7gA 217 2.80e+01 1mxgA 435 2.81e+01 b.71.1.1,c.1.8.1 85193,85194 2cy2A 174 2.93e+01 1s5aA 150 2.96e+01 d.17.4.10 98525 1nziA 159 2.97e+01 b.23.1.1,g.3.11.1 86449,86450 1vpkA 378 3.01e+01 1cv8 174 3.01e+01 1cv8 d.3.1.1 37089 1y71A 130 3.04e+01 1vf8A 377 3.14e+01 1u2cA 246 3.16e+01 b.1.6.2,d.272.1.1 107610,107611 1yfuA 174 3.18e+01 1ijtA 128 3.20e+01 1bfg b.42.1.1 62510 2gaxA 135 3.25e+01 2bepA 159 3.28e+01 1qciA 262 3.32e+01 1qi7A d.165.1.1 42201 2fuvA 549 3.34e+01 1ctt 294 3.34e+01 1ctt c.97.1.1,c.97.1.1 36022,36023 1lqsR 214 3.40e+01 b.1.2.1,b.1.2.1 74194,74195 1y1uA 585 3.40e+01 1xtoA 311 3.41e+01 1mugA 168 3.41e+01 1mugA c.18.1.2 31030 2c4bA 143 3.46e+01 1i1iP 681 3.46e+01 1i1iP d.92.1.5 40297 1e9lA 377 3.49e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 1kwsA 261 3.53e+01 c.68.1.7 73083 2d7nA 93 3.59e+01 1p5zB 263 3.75e+01 c.37.1.1 87815 1h0hB 214 3.76e+01 d.58.1.5 76437 1a62 130 3.77e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1g5aA 628 3.83e+01 b.71.1.1,c.1.8.1 65152,65153 2gjdA 157 3.84e+01 1qwkA 317 4.00e+01 c.1.7.1 96482 1juhA 350 4.06e+01 b.82.1.5 71884 1zc3B 113 4.08e+01 1lvmA 229 4.19e+01 b.47.1.3 78243 1vqoQ 96 4.24e+01 1jj2P 95 4.25e+01 1ffkN b.34.5.1 63101 1s72Q 96 4.25e+01 b.34.5.1 105336 1zhhB 242 4.29e+01 2biqA 219 4.31e+01 1qwyA 291 4.40e+01 b.84.3.2 96509 1jf9A 408 4.42e+01 1c0nA c.67.1.3 62931 1lvoA 302 4.43e+01 b.47.1.4 74284 1iw7C 1119 4.43e+01 e.29.1.1 71474 1q5hA 147 4.52e+01 b.85.4.1 95893 2ampA 304 4.53e+01 1yovA 537 4.60e+01 1txkA 498 4.63e+01 b.1.18.2,b.30.5.9 107425,107426 2al3A 90 4.69e+01 2fp8A 322 4.78e+01 2ac0A 200 4.80e+01 1dytA 133 4.84e+01 7rsa d.5.1.1 37288 1kjkA 64 4.87e+01 d.10.1.4 72613 1jvsA 400 4.87e+01 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1f89A 291 4.89e+01 d.160.1.1 64988 1oe8A 211 4.94e+01 a.45.1.1,c.47.1.5 86905,86906 1k7cA 233 4.95e+01 c.23.10.4 68267 1vr3A 191 4.96e+01 1w0dA 337 5.06e+01 1noyA 388 5.09e+01 1clqA c.55.3.5 33713 1m1fA 110 5.11e+01 b.34.6.2 78401 1tedA 393 5.14e+01 c.95.1.2 106807 1tupA 219 5.17e+01 1tupA b.2.5.2 22434 1w2lA 99 5.17e+01 1q8hA 49 5.19e+01 g.32.1.1 96207 1p6oA 161 5.26e+01 c.97.1.2 94185 1jmsA 381 5.33e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1fvuB 125 5.36e+01 1ixxB d.169.1.1 42346 1uolA 219 5.37e+01 b.2.5.2 99695 2biwA 490 5.41e+01 1e79D 482 5.55e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1jtdB 273 5.59e+01 b.69.5.2 67265 1i1dA 161 5.59e+01 1i21A d.108.1.1 61526 2cdcA 366 5.61e+01 1dynA 125 5.72e+01 1dynA b.55.1.1 26955 6mhtA 327 5.73e+01 6mhtA c.66.1.26 34226 1voqa 90 5.74e+01 1xrtA 467 5.89e+01 1cjxA 357 5.90e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1a8vA 121 6.03e+01 1a62 a.140.3.1,b.40.4.5 64712,64713 1ca1 370 6.04e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1wiwA 290 6.24e+01 1q1uA 144 6.31e+01 b.42.1.1 95608 1mvfD 82 6.39e+01 b.129.1.1 85143 1qovH 260 6.47e+01 6prcH b.41.1.1,f.23.10.1 25464,43457 1h8eD 482 6.47e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1uv4A 293 6.49e+01 1w2fA 276 6.51e+01 d.143.1.3 109125 1dp4A 435 6.52e+01 1dp4A c.93.1.1 35710 1vk0A 206 6.65e+01 c.55.3.5 100839 1ofdA 1520 6.65e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1f2tA 149 6.67e+01 1f2tA c.37.1.12 32373 1rypH 205 6.73e+01 d.153.1.4 41876 1llp 343 6.73e+01 1arv a.93.1.1 18578 1vkdA 338 6.76e+01 b.67.2.4 108644 1i12A 160 6.80e+01 1i21A d.108.1.1 61515 1zt3A 80 6.85e+01 2pia 321 6.88e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1hd2A 161 6.94e+01 c.47.1.10 60962 2cw8A 537 6.97e+01 1wz4A 23 7.11e+01 1qz8A 113 7.13e+01 b.140.1.1 96619 1q8iA 783 7.15e+01 c.55.3.5,e.8.1.1 96208,96209 1t7vA 278 7.24e+01 2gqrA 237 7.32e+01 1ecsA 126 7.33e+01 1ecsA d.32.1.2 59407 1deoA 233 7.37e+01 1deoA c.23.10.4 31345 1n3gA 113 7.43e+01 d.204.1.1 79962 1n5nA 180 7.43e+01 d.167.1.1 85336 1h6dA 433 7.47e+01 c.2.1.3,d.81.1.5 65656,65657 2aa4A 289 7.49e+01 1dkzA 219 7.52e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1qv1A 195 7.54e+01 a.39.1.5 96347 1ift 263 7.59e+01 1mrj d.165.1.1 42211 1w9iA 770 7.60e+01 2gfaA 119 7.60e+01 1pk6A 133 7.62e+01 b.22.1.1 94801 1us8A 147 7.63e+01 c.37.1.12 99859 1f8vA 355 7.67e+01 2bbvA b.121.4.4 23329 1yopA 83 7.67e+01 2f5tX 233 7.70e+01 1e5dA 402 7.73e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1regX 122 7.74e+01 1regX d.58.27.1 39406 2b7yA 182 7.76e+01 1jj2T 66 7.80e+01 1ffkR g.39.1.6 63105 1s72U 66 7.80e+01 g.39.1.6 105340 1vqoU 66 7.80e+01 2ftwA 521 7.80e+01 1khiA 176 7.81e+01 b.34.5.2,b.40.4.5 77408,77409 2c2xA 281 7.83e+01 1tq5A 242 7.83e+01 1jf2A 195 7.83e+01 1ej3A a.39.1.5 62930 1rb9 53 7.89e+01 1rb9 g.41.5.1 45214 1uq5A 263 7.91e+01 d.165.1.1 99778 1el4A 195 7.93e+01 1ej3A a.39.1.5 59453 1gh9A 71 7.95e+01 1gh9A g.41.6.1 45266 1mhyD 521 7.95e+01 1mhyD a.25.1.2 16780 2ai4A 119 7.99e+01 1olzA 663 8.04e+01 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1qk7A 32 8.06e+01 1qk7A g.3.6.2 44116 1g7sA 594 8.08e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1i1qB 192 8.15e+01 1qdlB c.23.16.1 61544 1wriA 93 8.16e+01 1v61A 132 8.17e+01 b.55.1.1 108389 2iwaA 266 8.21e+01 1a58 177 8.26e+01 2cpl b.62.1.1 27495 1z1zA 131 8.33e+01 2c27A 315 8.35e+01 1prs 173 8.36e+01 1prs b.11.1.1,b.11.1.1 23625,23626 1rzhH 260 8.43e+01 b.41.1.1,f.23.10.1 98162,98163 1x31C 206 8.57e+01 1ywsA 82 8.58e+01 2cohA 202 8.70e+01 1aa6 715 8.71e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1w1hA 151 8.71e+01 1l8bA 190 8.83e+01 d.86.1.1 73683 1s5uA 138 8.99e+01 d.38.1.1 98573