# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nxmA 197 1.67e-01 b.82.1.1 86385 2awaA 390 9.76e-01 1gh9A 71 1.92e+00 1gh9A g.41.6.1 45266 1gyfA 62 2.12e+00 1gyfA d.76.1.1 39749 2ahjA 206 2.53e+00 2ahjA d.149.1.1 41772 2cz1A 206 2.61e+00 1q8fA 313 3.65e+00 c.70.1.1 96203 1syxB 86 4.24e+00 1eo1A 124 5.12e+00 1eo1A c.55.5.1 33739 1wwrA 171 5.95e+00 1wxxA 382 6.52e+00 2bepA 159 7.97e+00 1nnwA 252 8.80e+00 d.159.1.5 80674 1th0A 226 1.05e+01 d.3.1.7 106903 1wz4A 23 1.10e+01 1xtnA 120 1.13e+01 1m2tB 263 1.18e+01 b.42.2.1,b.42.2.1 84762,84763 1xteA 154 1.20e+01 1v37A 177 1.22e+01 1s6lA 212 1.37e+01 1i1qA 520 1.46e+01 1qdlA d.161.1.1 61543 2avtA 378 1.63e+01 1h8gA 95 1.69e+01 b.109.1.1 65735 2fhqA 141 1.74e+01 1fjgE 162 1.75e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1vqoW 154 1.83e+01 1doi 128 1.87e+01 1awd d.15.4.1 37676 2c7xA 436 1.89e+01 2fa8A 105 1.95e+01 1z5zA 271 2.07e+01 1pk6A 133 2.12e+01 b.22.1.1 94801 1y42X 392 2.30e+01 1el4A 195 2.39e+01 1ej3A a.39.1.5 59453 1rdg 53 2.41e+01 1rb9 g.41.5.1 45221 1vzwA 244 2.49e+01 1s72W 154 2.57e+01 d.59.1.1 105342 1n7zA 334 2.57e+01 b.127.1.1 85380 1nnxA 109 2.64e+01 b.40.10.1 92013 1jj2V 154 2.64e+01 1ffkT d.59.1.1 63107 1t4wA 196 2.65e+01 b.2.5.2 106427 1dik 874 2.73e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1o12A 376 2.82e+01 b.92.1.5,c.1.9.10 80758,80759 1gdhA 320 3.11e+01 1gdhA c.2.1.4,c.23.12.1 30095,31355 2ghpA 292 3.28e+01 1feuA 206 3.32e+01 1feuA b.53.1.1 59801 1dabA 539 3.34e+01 1dabA b.80.1.7 28049 1y6iA 233 3.38e+01 1tqzA 133 3.44e+01 2amyA 246 3.53e+01 1nziA 159 3.63e+01 b.23.1.1,g.3.11.1 86449,86450 1z63A 500 3.74e+01 1k47A 337 3.77e+01 d.14.1.5,d.58.26.4 72040,72041 1rb9 53 3.81e+01 1rb9 g.41.5.1 45214 1mv4A 37 3.90e+01 h.1.5.1 79496 2sas 185 3.92e+01 2sas a.39.1.5 17258 2grrA 161 3.96e+01 2bjbA 462 4.03e+01 1ug6A 431 4.14e+01 c.1.8.4 88490 1aky 221 4.21e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1vqoU 66 4.24e+01 1woqA 267 4.28e+01 c.55.1.10,c.55.1.10 109462,109463 1vpkA 378 4.37e+01 1c4rA 182 4.54e+01 1c4rA b.29.1.4 24229 1tovA 98 4.55e+01 b.34.10.1 107179 1a62 130 4.59e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1p5zB 263 4.65e+01 c.37.1.1 87815 1sz6B 263 4.73e+01 1msk 331 4.73e+01 1msk d.173.1.1 42495 1gy7A 125 4.74e+01 d.17.4.2 70738 2gaxA 135 4.79e+01 1voqa 90 4.81e+01 1l6oA 95 4.84e+01 b.36.1.1 84534 1jj2T 66 4.89e+01 1ffkR g.39.1.6 63105 1u9aA 160 5.01e+01 1u9aA d.20.1.1 38333 2hcyA 347 5.07e+01 1lplA 95 5.10e+01 b.34.10.1 74173 1qv1A 195 5.13e+01 a.39.1.5 96347 1jf2A 195 5.21e+01 1ej3A a.39.1.5 62930 1s72U 66 5.35e+01 g.39.1.6 105340 1zgoA 223 5.52e+01 1fa8A 135 5.58e+01 1qipA d.32.1.1 38486 1cewI 108 5.65e+01 1cewI d.17.1.2 37999 1npsA 88 5.78e+01 1prs b.11.1.1 23622 1yh6A 179 5.82e+01 1k1xA 659 6.00e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1t2wA 145 6.11e+01 b.100.1.1 106289 1q8bA 105 6.25e+01 d.58.4.6 96201 1bqhG 129 6.38e+01 1cd8 b.1.1.1 19715 1gz6A 319 6.56e+01 c.2.1.2 76410 2d93A 134 6.62e+01 2bzpA 226 6.76e+01 1lfdA 87 6.82e+01 1lfdA d.15.1.5 37622 1svpA 161 6.93e+01 1svpA b.47.1.3 26384 1wriA 93 7.04e+01 1zbqA 327 7.10e+01 1zo2A 129 7.29e+01 1a8vA 121 7.44e+01 1a62 a.140.3.1,b.40.4.5 64712,64713 1f9zA 135 7.55e+01 1qipA d.32.1.1 38484 1cv8 174 7.76e+01 1cv8 d.3.1.1 37089 1lqsR 214 7.77e+01 b.1.2.1,b.1.2.1 74194,74195 1wi0A 113 7.77e+01 2cr9A 139 7.82e+01 1guzA 310 7.92e+01 c.2.1.5,d.162.1.1 65586,65587 2f0aA 98 8.09e+01 1nezG 128 8.29e+01 b.1.1.1 85592 1jj2E 177 8.35e+01 1ffk1 d.141.1.1,d.141.1.1 63089,63090 2d2mC 147 8.35e+01 1j97A 211 8.40e+01 1f5sA c.108.1.4 62753 1tw7A 99 8.46e+01 1l7mA 211 8.46e+01 c.108.1.4 73664 1n3gA 113 8.48e+01 d.204.1.1 79962 1wstA 417 8.49e+01 1z90A 469 8.67e+01 1y9lA 115 8.86e+01 1kblA 873 8.91e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386