# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nxmA 197 2.38e-01 b.82.1.1 86385 1wwrA 171 1.23e+00 2awaA 390 1.44e+00 1eur 365 1.71e+00 1eut b.68.1.1 27607 1woqA 267 2.32e+00 c.55.1.10,c.55.1.10 109462,109463 1z90A 469 2.59e+00 1wcqA 601 2.79e+00 1w8oA 601 3.00e+00 1m98A 317 3.15e+00 a.175.1.1,d.17.4.6 78866,78867 1ojqA 212 3.40e+00 d.166.1.1 93146 3nul 130 3.42e+00 3nul d.110.1.1 40891 2gupA 292 3.52e+00 1u9aA 160 4.04e+00 1u9aA d.20.1.1 38333 2grrA 161 4.13e+00 4enl 436 4.15e+00 4enl c.1.11.1,d.54.1.1 29202,38846 1ri6A 343 4.58e+00 b.69.11.1 97503 1llnA 262 4.61e+00 d.165.1.1 84625 2al2A 436 4.88e+00 1oneA 436 4.88e+00 4enl c.1.11.1,d.54.1.1 29200,38844 2al1A 436 4.88e+00 1acf 125 5.01e+00 3nul d.110.1.1 40882 1fa8A 135 5.44e+00 1qipA d.32.1.1 38486 1tqzA 133 5.45e+00 1kyqA 274 6.07e+00 c.2.1.11,e.37.1.1 73281,73282 1qy6A 274 6.31e+00 b.47.1.1 96574 1eo1A 124 6.50e+00 1eo1A c.55.5.1 33739 1qipA 183 6.71e+00 1qipA d.32.1.1 38470 1f9zA 135 7.01e+00 1qipA d.32.1.1 38484 1lcyA 325 7.04e+00 b.36.1.4,b.47.1.1 73834,73835 2bepA 159 7.48e+00 1df7A 159 7.81e+00 3dfr c.71.1.1 34885 1khdA 345 7.90e+00 a.46.2.1,c.27.1.1 77400,77401 1ue1A 164 8.29e+00 b.40.4.3 99243 1icfI 65 8.34e+00 1icfI g.28.1.1 44958 1ne8A 117 8.45e+00 b.34.6.2 80424 1dq3A 454 9.50e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1xfsA 178 9.80e+00 d.129.3.5 109589 1nziA 159 1.01e+01 b.23.1.1,g.3.11.1 86449,86450 1h8gA 95 1.04e+01 b.109.1.1 65735 1q8fA 313 1.18e+01 c.70.1.1 96203 2avtA 378 1.27e+01 1fjgE 162 1.27e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1q5hA 147 1.33e+01 b.85.4.1 95893 1xrtA 467 1.33e+01 1zn6A 227 1.33e+01 1qz8A 113 1.34e+01 b.140.1.1 96619 1jf2A 195 1.45e+01 1ej3A a.39.1.5 62930 2d7nA 93 1.46e+01 1lvoA 302 1.47e+01 b.47.1.4 74284 2ai4A 119 1.50e+01 1dynA 125 1.51e+01 1dynA b.55.1.1 26955 1yh6A 179 1.51e+01 1zo2A 129 1.53e+01 2ampA 304 1.55e+01 1o12A 376 1.61e+01 b.92.1.5,c.1.9.10 80758,80759 1qv1A 195 1.61e+01 a.39.1.5 96347 1z7gA 217 1.66e+01 2cn3A 737 1.68e+01 1lfdA 87 1.68e+01 1lfdA d.15.1.5 37622 1el4A 195 1.69e+01 1ej3A a.39.1.5 59453 1vqoW 154 1.74e+01 2ffsA 157 1.76e+01 2fp8A 322 1.77e+01 2as0A 396 1.78e+01 1vpkA 378 1.80e+01 2gwdA 449 1.80e+01 1vplA 256 1.83e+01 2gjdA 157 1.86e+01 1u2cA 246 1.86e+01 b.1.6.2,d.272.1.1 107610,107611 1vr3A 191 1.93e+01 1cojA 212 1.94e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 2cy2A 174 1.94e+01 1jj2P 95 1.98e+01 1ffkN b.34.5.1 63101 1s72Q 96 1.98e+01 b.34.5.1 105336 1q8bA 105 1.99e+01 d.58.4.6 96201 1vqoQ 96 2.00e+01 1dytA 133 2.05e+01 7rsa d.5.1.1 37288 1pm3A 78 2.12e+01 b.41.1.2 94889 2c2xA 281 2.14e+01 1jj2V 154 2.20e+01 1ffkT d.59.1.1 63107 1s72W 154 2.21e+01 d.59.1.1 105342 1q67A 231 2.31e+01 b.55.1.7 95960 1h0hB 214 2.38e+01 d.58.1.5 76437 1fvuB 125 2.38e+01 1ixxB d.169.1.1 42346 1a2pA 110 2.39e+01 1b20A d.1.1.2 36140 1noyA 388 2.50e+01 1clqA c.55.3.5 33713 1rypH 205 2.50e+01 d.153.1.4 41876 1syxB 86 2.51e+01 1o97C 264 2.61e+01 c.26.2.3 81232 2d93A 134 2.65e+01 2c4bA 143 2.65e+01 1ww9A 392 2.76e+01 1pot 325 2.79e+01 1pot c.94.1.1 35807 1npsA 88 2.80e+01 1prs b.11.1.1 23622 1cv8 174 2.89e+01 1cv8 d.3.1.1 37089 1jtdB 273 2.89e+01 b.69.5.2 67265 1uv4A 293 2.96e+01 2ftwA 521 3.02e+01 1wiwA 290 3.05e+01 1j1qA 261 3.06e+01 d.165.1.1 90768 1ijtA 128 3.07e+01 1bfg b.42.1.1 62510 1ctt 294 3.08e+01 1ctt c.97.1.1,c.97.1.1 36022,36023 1kjkA 64 3.10e+01 d.10.1.4 72613 1w2fA 276 3.13e+01 d.143.1.3 109125 1y71A 130 3.13e+01 1hd2A 161 3.16e+01 c.47.1.10 60962 1fzvA 132 3.16e+01 1vpfA g.17.1.1 60159 1jmsA 381 3.22e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 2biwA 490 3.27e+01 1s5aA 150 3.30e+01 d.17.4.10 98525 1b35A 260 3.34e+01 1b35A b.121.4.1 23333 1lqsR 214 3.38e+01 b.1.2.1,b.1.2.1 74194,74195 1x31C 206 3.40e+01 2fuvA 549 3.43e+01 1dx5I 118 3.48e+01 1dx5I g.3.11.1,g.3.11.1,g.3.11.1 44302,44303,44304 1m1fA 110 3.49e+01 b.34.6.2 78401 2cr9A 139 3.49e+01 2b5nA 323 3.58e+01 1e79D 482 3.58e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1jvsA 400 3.60e+01 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1gyfA 62 3.64e+01 1gyfA d.76.1.1 39749 2biqA 219 3.66e+01 1cjbA 231 3.68e+01 1qk3A c.61.1.1 34079 2frnA 278 3.69e+01 1rzhH 260 3.69e+01 b.41.1.1,f.23.10.1 98162,98163 1mml 265 3.82e+01 1mml e.8.1.2 43015 2ac0A 200 3.83e+01 1mkkA 96 3.85e+01 g.17.1.1 79240 1uolA 219 3.88e+01 b.2.5.2 99695 1qovH 260 3.90e+01 6prcH b.41.1.1,f.23.10.1 25464,43457 1h6hA 143 3.92e+01 d.189.1.1 65681 1wkt 88 3.92e+01 1wkt b.11.1.2 23630 1s4bP 674 3.95e+01 d.92.1.5 105252 1mvfD 82 4.03e+01 b.129.1.1 85143 1jofA 365 4.12e+01 b.69.10.1 71775 2cdcA 366 4.12e+01 1itwA 741 4.14e+01 c.77.1.2 76793 1tupA 219 4.15e+01 1tupA b.2.5.2 22434 1txkA 498 4.18e+01 b.1.18.2,b.30.5.9 107425,107426 1juhA 350 4.18e+01 b.82.1.5 71884 1q0qA 406 4.20e+01 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1qcxA 359 4.25e+01 1qcxA b.80.1.2 28028 1q8hA 49 4.28e+01 g.32.1.1 96207 1olzA 663 4.29e+01 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1z1zA 131 4.31e+01 1a62 130 4.33e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1prs 173 4.34e+01 1prs b.11.1.1,b.11.1.1 23625,23626 1x1iA 752 4.35e+01 2f4wA 187 4.37e+01 1y4jA 284 4.43e+01 1khoA 370 4.47e+01 a.124.1.1,b.12.1.3 72489,72490 1iuaA 83 4.49e+01 g.35.1.1 71438 1jatA 155 4.49e+01 1u9aA d.20.1.1 62818 1w7jA 795 4.49e+01 1x23A 155 4.51e+01 1fzyA 149 4.52e+01 d.20.1.1 65072 1qwyA 291 4.52e+01 b.84.3.2 96509 1wz4A 23 4.54e+01 2fymA 431 4.55e+01 1mugA 168 4.55e+01 1mugA c.18.1.2 31030 2fhfA 1083 4.55e+01 1cruA 454 4.56e+01 1c9uA b.68.2.1 27617 1ws0A 156 4.62e+01 2gfaA 119 4.74e+01 1o0xA 262 4.82e+01 d.127.1.1 80755 1gpeA 587 4.85e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1svpA 161 4.85e+01 1svpA b.47.1.3 26384 1k7cA 233 4.91e+01 c.23.10.4 68267 1s6lA 212 4.95e+01 1xer 103 4.97e+01 1xer d.58.1.3 38990 1rthA 560 5.12e+01 1rthA c.55.3.1,e.8.1.2 33576,43028 1n3gA 113 5.12e+01 d.204.1.1 79962 1zhhB 242 5.14e+01 1vrtA 560 5.15e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 1voqa 90 5.17e+01 1ts9A 102 5.22e+01 1mhyD 521 5.28e+01 1mhyD a.25.1.2 16780 1pk6A 133 5.29e+01 b.22.1.1 94801 1z3qA 200 5.35e+01 1yfuA 174 5.35e+01 2al3A 90 5.37e+01 1lvmA 229 5.45e+01 b.47.1.3 78243 1bzyA 217 5.48e+01 1qk3A c.61.1.1 34071 1lk2A 274 5.50e+01 b.1.1.2,d.19.1.1 91056,91057 1uq5A 263 5.53e+01 d.165.1.1 99778 1vquA 374 5.54e+01 1jbbA 153 5.56e+01 1u9aA d.20.1.1 62842 1mrg 263 5.57e+01 1mrj d.165.1.1 42183 2madH 373 5.68e+01 2bbkH b.69.2.1 27639 2gqrA 237 5.71e+01 1j9aA 184 5.72e+01 c.55.3.5 84135 2ck3D 482 5.81e+01 1rqpA 299 5.90e+01 b.141.1.1,c.132.1.1 97754,97755 1svvA 359 5.94e+01 c.67.1.1 106054 1ift 263 5.95e+01 1mrj d.165.1.1 42211 1vk0A 206 5.95e+01 c.55.3.5 100839 1deoA 233 5.97e+01 1deoA c.23.10.4 31345 1ca1 370 6.02e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1lvk 762 6.03e+01 1lvk b.34.3.1,c.37.1.9 24576,32173 1xaoA 121 6.07e+01 1regX 122 6.11e+01 1regX d.58.27.1 39406 2fa8A 105 6.19e+01 1ufkA 254 6.26e+01 c.66.1.39 99340 1fviA 297 6.29e+01 1fviA b.40.4.6,d.142.2.1 25364,41578 1n7zA 334 6.32e+01 b.127.1.1 85380 1ecsA 126 6.35e+01 1ecsA d.32.1.2 59407 1lkkA 105 6.37e+01 1lckA d.93.1.1 40412 1wfyA 104 6.42e+01 1f89A 291 6.48e+01 d.160.1.1 64988 1g291 372 6.48e+01 1g291 1p5zB 263 6.55e+01 c.37.1.1 87815 1dkzA 219 6.56e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1vrmA 325 6.59e+01 1fltV 98 6.67e+01 1vpfA g.17.1.1 44751 2ge3A 170 6.67e+01 1ywfA 296 6.68e+01 1w9sA 142 6.87e+01 2bryA 497 6.98e+01 1r45A 204 7.01e+01 1yopA 83 7.11e+01 1vmfA 145 7.11e+01 1sixA 174 7.13e+01 b.85.4.1 98892 1yifA 533 7.17e+01 1yhfA 115 7.20e+01 1xh3A 276 7.20e+01 1i3zA 103 7.20e+01 d.93.1.1 83667 1q1uA 144 7.21e+01 b.42.1.1 95608 2a9kB 223 7.24e+01 1g5aA 628 7.26e+01 b.71.1.1,c.1.8.1 65152,65153 1h8lA 380 7.27e+01 b.3.2.1,c.56.5.1 65737,65738 1so9A 164 7.27e+01 b.146.1.1 105842 1h8eD 482 7.32e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1gbg 214 7.35e+01 1axkA b.29.1.2 24171 1vkdA 338 7.38e+01 b.67.2.4 108644 1vzqH 250 7.42e+01 1rb9 53 7.42e+01 1rb9 g.41.5.1 45214 1onqA 283 7.43e+01 b.1.1.2,d.19.1.1 93365,93366 1zt3A 80 7.44e+01 2gdnA 267 7.44e+01 1nnxA 109 7.46e+01 b.40.10.1 92013 2c9wA 169 7.48e+01 1h8dH 260 7.57e+01 5ptp 1umgA 362 7.60e+01 d.280.1.1 107956 1cs6A 382 7.65e+01 1cs6A b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 1vmjA 151 7.66e+01 1ujcA 161 7.81e+01 1a8vA 121 7.82e+01 1a62 a.140.3.1,b.40.4.5 64712,64713 2exnA 136 7.92e+01 1d0yA 761 7.93e+01 1lvk b.34.3.1,c.37.1.9 24581,32178 1y0gA 191 7.97e+01 1nszA 347 7.99e+01 b.30.5.4 80724 1z47A 355 8.03e+01 2cf8H 257 8.16e+01 1ytaA 180 8.16e+01 1vr1H 261 8.17e+01 5ptp 2ghsA 326 8.27e+01 1vzwA 244 8.27e+01 2d0oA 610 8.34e+01 1ihkA 174 8.35e+01 1bfg b.42.1.1 62384 1wba 175 8.36e+01 1wba b.42.4.1 25591 2h0eA 121 8.52e+01 1j9lA 247 8.55e+01 c.106.1.1 62762 1gtkA 313 8.56e+01 c.94.1.1,d.50.2.1 76346,76347 2akaA 776 8.56e+01 1yovA 537 8.57e+01 1w9iA 770 8.65e+01 1q8iA 783 8.67e+01 c.55.3.5,e.8.1.1 96208,96209 1cyw 205 8.69e+01 1cyx b.6.1.2 23024 2a38A 194 8.77e+01 1g24A 211 8.78e+01 1g24A d.166.1.1 42270 1vloA 381 8.79e+01 b.44.2.1,d.250.1.1 108838,108839 1xeaA 323 8.80e+01 c.2.1.3,d.81.1.5 109572,109573 1qciA 262 8.84e+01 1qi7A d.165.1.1 42201 1f2tA 149 8.88e+01 1f2tA c.37.1.12 32373 1h0bA 256 8.91e+01 b.29.1.11 83422