# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2awaA 390 5.59e-01 1q8fA 313 1.85e+00 c.70.1.1 96203 1gyfA 62 2.05e+00 1gyfA d.76.1.1 39749 1syxB 86 2.88e+00 2amyA 246 3.71e+00 2gaxA 135 4.12e+00 1eo1A 124 4.19e+00 1eo1A c.55.5.1 33739 1tqzA 133 4.98e+00 1jj2V 154 6.90e+00 1ffkT d.59.1.1 63107 1s72W 154 7.06e+00 d.59.1.1 105342 1vqoW 154 7.14e+00 1y6iA 233 7.62e+00 2sas 185 1.11e+01 2sas a.39.1.5 17258 2ahjA 206 1.18e+01 2ahjA d.149.1.1 41772 2cz1A 206 1.19e+01 1wxxA 382 1.20e+01 1lfdA 87 1.26e+01 1lfdA d.15.1.5 37622 1ug6A 431 1.29e+01 c.1.8.4 88490 1nxmA 197 1.32e+01 b.82.1.1 86385 1tuwA 109 1.37e+01 d.58.4.8 107346 1cv8 174 1.39e+01 1cv8 d.3.1.1 37089 6ldh 330 1.45e+01 3ldh c.2.1.5,d.162.1.1 30161,42128 1wwrA 171 1.46e+01 1wstA 417 1.70e+01 2fa8A 105 1.89e+01 2c7xA 436 2.00e+01 1gh9A 71 2.02e+01 1gh9A g.41.6.1 45266 1h8gA 95 2.18e+01 b.109.1.1 65735 1yxmA 303 2.25e+01 1wz4A 23 2.25e+01 2avtA 378 2.35e+01 1vzwA 244 2.48e+01 1g71A 347 2.50e+01 1g71A d.264.1.1 43268 1m2tB 263 2.69e+01 b.42.2.1,b.42.2.1 84762,84763 2fhqA 141 2.83e+01 1vdlA 80 2.85e+01 a.5.2.1 108528 1aky 221 2.90e+01 1zin c.37.1.1,g.41.2.1 31896,45197 2bjbA 462 3.07e+01 1s6lA 212 3.34e+01 2aqlA 173 3.40e+01 2c31A 568 3.41e+01 1guzA 310 3.62e+01 c.2.1.5,d.162.1.1 65586,65587 1iz6A 138 3.72e+01 b.34.5.2,b.40.4.5 76976,76977 1lqsR 214 3.74e+01 b.1.2.1,b.1.2.1 74194,74195 1nnwA 252 3.82e+01 d.159.1.5 80674 1ay7B 89 3.82e+01 1ay7B c.9.1.1 30836 1xtnA 120 3.84e+01 2fueA 262 3.87e+01 1x3kA 152 4.07e+01 1fjgE 162 4.11e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1jlnA 297 4.45e+01 1pty c.45.1.2 63172 1ccr 112 4.46e+01 1ycc a.3.1.1 15877 1q8bA 105 4.50e+01 d.58.4.6 96201 1dgwX 79 4.70e+01 1caxB b.82.1.2 28091 1k47A 337 5.22e+01 d.14.1.5,d.58.26.4 72040,72041 1z5zA 271 5.54e+01 1wiwA 290 5.62e+01 1n7zA 334 5.63e+01 b.127.1.1 85380 1gy7A 125 5.67e+01 d.17.4.2 70738 1th0A 226 5.96e+01 d.3.1.7 106903 1o12A 376 5.99e+01 b.92.1.5,c.1.9.10 80758,80759 1v37A 177 6.07e+01 1pbyC 79 6.11e+01 a.137.9.1 94423 2h6dA 276 6.23e+01 1ycqA 107 6.26e+01 1ycqA a.42.1.1 17419 1cewI 108 6.28e+01 1cewI d.17.1.2 37999 1kzkA 99 6.30e+01 b.50.1.1 73371 2h88A 621 6.38e+01 1wvqA 167 6.50e+01 1mv4A 37 6.56e+01 h.1.5.1 79496 1a7i 81 6.62e+01 1b8tA g.39.1.3,g.39.1.3 45143,45144 1doi 128 6.68e+01 1awd d.15.4.1 37676 1xteA 154 6.76e+01 1riiA 265 6.77e+01 2fbwA 621 6.83e+01 1wfyA 104 6.86e+01 1q67A 231 7.20e+01 b.55.1.7 95960 1qtnA 164 7.29e+01 1pauA c.17.1.1 30999 1ufkA 254 7.40e+01 c.66.1.39 99340 1z6aA 500 7.42e+01 1nnxA 109 7.46e+01 b.40.10.1 92013 1zt3A 80 7.50e+01 1nziA 159 7.59e+01 b.23.1.1,g.3.11.1 86449,86450 1df7A 159 7.59e+01 3dfr c.71.1.1 34885 1kexA 155 7.69e+01 b.18.1.2 77350 1icfI 65 7.74e+01 1icfI g.28.1.1 44958 1zn8A 180 8.09e+01 1urrA 102 8.15e+01 d.58.10.1 107998 1rb9 53 8.26e+01 1rb9 g.41.5.1 45214 2d7nA 93 8.28e+01 1iuaA 83 8.34e+01 g.35.1.1 71438 2ghpA 292 8.35e+01 1kngA 156 8.44e+01 c.47.1.10 72777 1zo2A 129 8.62e+01 1pm3A 78 8.80e+01 b.41.1.2 94889 1wflA 74 8.88e+01 1a8vA 121 8.97e+01 1a62 a.140.3.1,b.40.4.5 64712,64713 1w98B 283 9.00e+01