make[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0343' mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0343.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.predburial.rdb sed -e s/XXX0000/T0343/ -e s/START_COL/1/ \ -e s/COSTFCN/predburial/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e s/REAL_PDB// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /cse/grads/jarchie/projects/cvs/karplus/undertaker/undertaker # command:# Seed set to 1172978010 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.14507 sec, elapsed time= 6.28488 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.22105 sec, elapsed time= 6.39232 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0343 numbered 1 through 104 Created new target T0343 from T0343.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:Error: ReadConformPDBidsNo chains found for ID set: # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:# reading script from file predburial.costfcn # Read 5 alphabets from /projects/compbio/lib/alphabet/two-spot-burial.alphabet # created predicted BurialPredCostFcn pred_burial2k # created predicted BurialPredCostFcn pred_burial2k_simple # created predicted BurialPredCostFcn pred_burial04 # created predicted BurialPredCostFcn pred_burial04_simple # created predicted BurialPredCostFcn pred_burial06 # created predicted BurialPredCostFcn pred_burial06_simple # reading predictions from T0343.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2k with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0343.t04.alpha.rdb # created predicted alpha cost function pred_alpha04 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0343.t06.alpha.rdb # created predicted alpha cost function pred_alpha06 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # SetCost created cost = # ( 15 * wet6.5(6.5, /log(length)) + 5 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 5 * pred_burial2k_simple(9.65) + 5 * pred_burial2k(9.65) + 5 * pred_burial04_simple(9.65) + 5 * pred_burial04(9.65) + 5 * pred_burial06_simple(9.65) + 5 * pred_burial06(9.65) + 2 * phobic_fit + 10 * n_ca_c + 20 * bad_peptide + 5 * sidechain + 8 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 50 * break + 3 * pred_alpha2k + 4 * pred_alpha04 + 5 * pred_alpha06 + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair + 1 * missing_atoms ) # command:CPU_time= 8.77667 sec, elapsed time= 9.58876 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -17.3077 # GDT_score(maxd=8,maxw=2.9)= -15.9932 # GDT_score(maxd=8,maxw=3.2)= -15.3953 # GDT_score(maxd=8,maxw=3.5)= -14.8169 # GDT_score(maxd=10,maxw=3.8)= -16.5597 # GDT_score(maxd=10,maxw=4)= -16.1164 # GDT_score(maxd=10,maxw=4.2)= -15.7 # GDT_score(maxd=12,maxw=4.3)= -17.65 # GDT_score(maxd=12,maxw=4.5)= -17.1854 # GDT_score(maxd=12,maxw=4.7)= -16.7405 # GDT_score(maxd=14,maxw=5.2)= -17.4883 # GDT_score(maxd=14,maxw=5.5)= -16.8593 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_479660302.pdb -s /var/tmp/to_scwrl_479660302.seq -o /var/tmp/from_scwrl_479660302.pdb > /var/tmp/scwrl_479660302.log Error: can't open any of /var/tmp/from_scwrl_479660302.pdb or /var/tmp/from_scwrl_479660302_b.pdb or /var/tmp/from_scwrl_479660302_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -17.0673 # GDT_score(maxd=8,maxw=2.9)= -15.2771 # GDT_score(maxd=8,maxw=3.2)= -14.566 # GDT_score(maxd=8,maxw=3.5)= -13.9412 # GDT_score(maxd=10,maxw=3.8)= -15.8696 # GDT_score(maxd=10,maxw=4)= -15.3887 # GDT_score(maxd=10,maxw=4.2)= -14.9306 # GDT_score(maxd=12,maxw=4.3)= -16.9408 # GDT_score(maxd=12,maxw=4.5)= -16.4443 # GDT_score(maxd=12,maxw=4.7)= -15.99 # GDT_score(maxd=14,maxw=5.2)= -16.7565 # GDT_score(maxd=14,maxw=5.5)= -16.1048 # command:# request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_429620530.pdb -s /var/tmp/to_scwrl_429620530.seq -o /var/tmp/from_scwrl_429620530.pdb > /var/tmp/scwrl_429620530.log Error: can't open any of /var/tmp/from_scwrl_429620530.pdb or /var/tmp/from_scwrl_429620530_b.pdb or /var/tmp/from_scwrl_429620530_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -16.1058 # GDT_score(maxd=8,maxw=2.9)= -14.8639 # GDT_score(maxd=8,maxw=3.2)= -14.2514 # GDT_score(maxd=8,maxw=3.5)= -13.6892 # GDT_score(maxd=10,maxw=3.8)= -15.3414 # GDT_score(maxd=10,maxw=4)= -14.959 # GDT_score(maxd=10,maxw=4.2)= -14.5716 # GDT_score(maxd=12,maxw=4.3)= -16.2642 # GDT_score(maxd=12,maxw=4.5)= -15.8405 # GDT_score(maxd=12,maxw=4.7)= -15.4308 # GDT_score(maxd=14,maxw=5.2)= -16.0405 # GDT_score(maxd=14,maxw=5.5)= -15.4802 # command:# request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1555476268.pdb -s /var/tmp/to_scwrl_1555476268.seq -o /var/tmp/from_scwrl_1555476268.pdb > /var/tmp/scwrl_1555476268.log Error: can't open any of /var/tmp/from_scwrl_1555476268.pdb or /var/tmp/from_scwrl_1555476268_b.pdb or /var/tmp/from_scwrl_1555476268_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -14.1827 # GDT_score(maxd=8,maxw=2.9)= -13.5218 # GDT_score(maxd=8,maxw=3.2)= -13.0334 # GDT_score(maxd=8,maxw=3.5)= -12.5227 # GDT_score(maxd=10,maxw=3.8)= -14.0462 # GDT_score(maxd=10,maxw=4)= -13.6625 # GDT_score(maxd=10,maxw=4.2)= -13.2866 # GDT_score(maxd=12,maxw=4.3)= -15.0741 # GDT_score(maxd=12,maxw=4.5)= -14.6605 # GDT_score(maxd=12,maxw=4.7)= -14.2822 # GDT_score(maxd=14,maxw=5.2)= -15.3236 # GDT_score(maxd=14,maxw=5.5)= -14.75 # command:# request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1285342906.pdb -s /var/tmp/to_scwrl_1285342906.seq -o /var/tmp/from_scwrl_1285342906.pdb > /var/tmp/scwrl_1285342906.log Error: can't open any of /var/tmp/from_scwrl_1285342906.pdb or /var/tmp/from_scwrl_1285342906_b.pdb or /var/tmp/from_scwrl_1285342906_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -16.8269 # GDT_score(maxd=8,maxw=2.9)= -15.7767 # GDT_score(maxd=8,maxw=3.2)= -15.0188 # GDT_score(maxd=8,maxw=3.5)= -14.3908 # GDT_score(maxd=10,maxw=3.8)= -16.0721 # GDT_score(maxd=10,maxw=4)= -15.6531 # GDT_score(maxd=10,maxw=4.2)= -15.2587 # GDT_score(maxd=12,maxw=4.3)= -17.3367 # GDT_score(maxd=12,maxw=4.5)= -16.8858 # GDT_score(maxd=12,maxw=4.7)= -16.4218 # GDT_score(maxd=14,maxw=5.2)= -17.3999 # GDT_score(maxd=14,maxw=5.5)= -16.7655 # command:# request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1382944138.pdb -s /var/tmp/to_scwrl_1382944138.seq -o /var/tmp/from_scwrl_1382944138.pdb > /var/tmp/scwrl_1382944138.log Error: can't open any of /var/tmp/from_scwrl_1382944138.pdb or /var/tmp/from_scwrl_1382944138_b.pdb or /var/tmp/from_scwrl_1382944138_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0343.try1-opt2.pdb looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -17.0673 # GDT_score(maxd=8,maxw=2.9)= -15.2727 # GDT_score(maxd=8,maxw=3.2)= -14.562 # GDT_score(maxd=8,maxw=3.5)= -13.9375 # GDT_score(maxd=10,maxw=3.8)= -15.8661 # GDT_score(maxd=10,maxw=4)= -15.3855 # GDT_score(maxd=10,maxw=4.2)= -14.9276 # GDT_score(maxd=12,maxw=4.3)= -16.9378 # GDT_score(maxd=12,maxw=4.5)= -16.4414 # GDT_score(maxd=12,maxw=4.7)= -15.9873 # GDT_score(maxd=14,maxw=5.2)= -16.754 # GDT_score(maxd=14,maxw=5.5)= -16.1023 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0343.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.788462 # GDT_score = -13.4615 # GDT_score(maxd=8,maxw=2.9)= -11.9638 # GDT_score(maxd=8,maxw=3.2)= -11.3683 # GDT_score(maxd=8,maxw=3.5)= -10.806 # GDT_score(maxd=10,maxw=3.8)= -12.4968 # GDT_score(maxd=10,maxw=4)= -12.1124 # GDT_score(maxd=10,maxw=4.2)= -11.7645 # GDT_score(maxd=12,maxw=4.3)= -13.5185 # GDT_score(maxd=12,maxw=4.5)= -13.1313 # GDT_score(maxd=12,maxw=4.7)= -12.7771 # GDT_score(maxd=14,maxw=5.2)= -13.5048 # GDT_score(maxd=14,maxw=5.5)= -13.0304 # command:# ReadConformPDB reading from PDB file T0343.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.740385 # GDT_score = -16.3462 # GDT_score(maxd=8,maxw=2.9)= -15.0069 # GDT_score(maxd=8,maxw=3.2)= -14.3211 # GDT_score(maxd=8,maxw=3.5)= -13.7529 # GDT_score(maxd=10,maxw=3.8)= -15.3418 # GDT_score(maxd=10,maxw=4)= -14.9594 # GDT_score(maxd=10,maxw=4.2)= -14.6133 # GDT_score(maxd=12,maxw=4.3)= -16.0136 # GDT_score(maxd=12,maxw=4.5)= -15.6372 # GDT_score(maxd=12,maxw=4.7)= -15.2582 # GDT_score(maxd=14,maxw=5.2)= -15.65 # GDT_score(maxd=14,maxw=5.5)= -15.1635 # command:# ReadConformPDB reading from PDB file T0343.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0343.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0343.undertaker-align.pdb looking for model 5 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try1-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try10-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try2-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try3-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try4-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try5-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try6-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try7-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try8-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try9-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0343.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-1vme-try1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-1vme-try1 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-1xeb-try1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-1xeb-try1 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try1-1xeb.pdb.gz looking for chain 'A' model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try1-1xeb # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try1-1xeb.unpack.pdb.gz looking for chain 'A' model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try1-1xeb.unpack # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try2-1e8o.pdb.gz looking for chain 'A' model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try2-1e8o # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try2-1vm6.pdb.gz looking for chain 'A' model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try2-1vm6 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try5-1kaf.pdb.gz looking for chain 'A' model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try5-1kaf # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try5-1kaf.unpack.pdb.gz looking for chain 'A' model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try5-1kaf.unpack # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try7-2b99.pdb.gz looking for chain 'A' model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try7-2b99 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try8-1fic.pdb.gz looking for chain 'A' model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try8-1fic # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try8-1nnq.pdb.gz looking for chain 'A' model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try8-1nnq # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try8-1pzw.pdb.gz looking for chain 'A' model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try8-1pzw # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try8-1y1a.pdb.gz looking for chain 'A' model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try8-1y1a # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try8-2pol.pdb.gz looking for chain 'A' model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-try8-2pol # ReadConformPDB reading from PDB file ../dimer/decoys/ps-1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//ps-1 # ReadConformPDB reading from PDB file ../dimer/decoys/ps-2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//ps-2 # ReadConformPDB reading from PDB file ../dimer/decoys/ps-3.pdb.gz looking for chain 'A' model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//ps-3 # ReadConformPDB reading from PDB file ../dimer/decoys/ps-try2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//ps-try2 # ReadConformPDB reading from PDB file ../dimer/decoys/try2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//try2 # ReadConformPDB reading from PDB file ../dimer/decoys/try2.unpack.pdb.gz looking for chain 'A' model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//try2.unpack # ReadConformPDB reading from PDB file ../dimer/decoys/try2A.pdb.gz looking for chain 'A' model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//try2A # ReadConformPDB reading from PDB file ../dimer/decoys/try2B.pdb.gz looking for chain 'A' model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//try2B # ReadConformPDB reading from PDB file ../dimer/decoys/try2re.pdb.gz looking for chain 'A' model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//try2re # ReadConformPDB reading from PDB file ../dimer/decoys/try7.pdb.gz looking for chain 'A' model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation dimer//try7 # ReadConformPDB reading from PDB file ../dimer/decoys/try7.unpack.pdb.gz looking for chain 'A' model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation dimer//try7.unpack # ReadConformPDB reading from PDB file ../dimer/decoys/try7A.pdb.gz looking for chain 'A' model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation dimer//try7A # ReadConformPDB reading from PDB file ../dimer/decoys/try7B.pdb.gz looking for chain 'A' model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation dimer//try7B # ReadConformPDB reading from PDB file ../dimer/decoys/try8.pdb.gz looking for chain 'A' model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation dimer//try8 # ReadConformPDB reading from PDB file ../dimer/decoys/try8.unpack.pdb.gz looking for chain 'A' model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation dimer//try8.unpack # ReadConformPDB reading from PDB file ../dimer/decoys/try8A.pdb.gz looking for chain 'A' model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation dimer//try8A # ReadConformPDB reading from PDB file ../dimer/decoys/try8B.pdb.gz looking for chain 'A' model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation dimer//try8B # ReadConformPDB reading from PDB file ../dimer/decoys/zpzw.pdb.gz looking for chain 'A' model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation dimer//zpzw # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1307840206.pdb -s /var/tmp/to_scwrl_1307840206.seq -o /var/tmp/from_scwrl_1307840206.pdb > /var/tmp/scwrl_1307840206.log Error: can't open any of /var/tmp/from_scwrl_1307840206.pdb or /var/tmp/from_scwrl_1307840206_b.pdb or /var/tmp/from_scwrl_1307840206_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1295548437.pdb -s /var/tmp/to_scwrl_1295548437.seq -o /var/tmp/from_scwrl_1295548437.pdb > /var/tmp/scwrl_1295548437.log Error: can't open any of /var/tmp/from_scwrl_1295548437.pdb or /var/tmp/from_scwrl_1295548437_b.pdb or /var/tmp/from_scwrl_1295548437_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_797547401.pdb -s /var/tmp/to_scwrl_797547401.seq -o /var/tmp/from_scwrl_797547401.pdb > /var/tmp/scwrl_797547401.log Error: can't open any of /var/tmp/from_scwrl_797547401.pdb or /var/tmp/from_scwrl_797547401_b.pdb or /var/tmp/from_scwrl_797547401_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1107234384.pdb -s /var/tmp/to_scwrl_1107234384.seq -o /var/tmp/from_scwrl_1107234384.pdb > /var/tmp/scwrl_1107234384.log Error: can't open any of /var/tmp/from_scwrl_1107234384.pdb or /var/tmp/from_scwrl_1107234384_b.pdb or /var/tmp/from_scwrl_1107234384_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_77840705.pdb -s /var/tmp/to_scwrl_77840705.seq -o /var/tmp/from_scwrl_77840705.pdb > /var/tmp/scwrl_77840705.log Error: can't open any of /var/tmp/from_scwrl_77840705.pdb or /var/tmp/from_scwrl_77840705_b.pdb or /var/tmp/from_scwrl_77840705_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1840438634.pdb -s /var/tmp/to_scwrl_1840438634.seq -o /var/tmp/from_scwrl_1840438634.pdb > /var/tmp/scwrl_1840438634.log Error: can't open any of /var/tmp/from_scwrl_1840438634.pdb or /var/tmp/from_scwrl_1840438634_b.pdb or /var/tmp/from_scwrl_1840438634_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_537587976.pdb -s /var/tmp/to_scwrl_537587976.seq -o /var/tmp/from_scwrl_537587976.pdb > /var/tmp/scwrl_537587976.log Error: can't open any of /var/tmp/from_scwrl_537587976.pdb or /var/tmp/from_scwrl_537587976_b.pdb or /var/tmp/from_scwrl_537587976_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_316984954.pdb -s /var/tmp/to_scwrl_316984954.seq -o /var/tmp/from_scwrl_316984954.pdb > /var/tmp/scwrl_316984954.log Error: can't open any of /var/tmp/from_scwrl_316984954.pdb or /var/tmp/from_scwrl_316984954_b.pdb or /var/tmp/from_scwrl_316984954_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1263596764.pdb -s /var/tmp/to_scwrl_1263596764.seq -o /var/tmp/from_scwrl_1263596764.pdb > /var/tmp/scwrl_1263596764.log Error: can't open any of /var/tmp/from_scwrl_1263596764.pdb or /var/tmp/from_scwrl_1263596764_b.pdb or /var/tmp/from_scwrl_1263596764_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_886574795.pdb -s /var/tmp/to_scwrl_886574795.seq -o /var/tmp/from_scwrl_886574795.pdb > /var/tmp/scwrl_886574795.log Error: can't open any of /var/tmp/from_scwrl_886574795.pdb or /var/tmp/from_scwrl_886574795_b.pdb or /var/tmp/from_scwrl_886574795_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_42138668.pdb -s /var/tmp/to_scwrl_42138668.seq -o /var/tmp/from_scwrl_42138668.pdb > /var/tmp/scwrl_42138668.log Error: can't open any of /var/tmp/from_scwrl_42138668.pdb or /var/tmp/from_scwrl_42138668_b.pdb or /var/tmp/from_scwrl_42138668_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1254580996.pdb -s /var/tmp/to_scwrl_1254580996.seq -o /var/tmp/from_scwrl_1254580996.pdb > /var/tmp/scwrl_1254580996.log Error: can't open any of /var/tmp/from_scwrl_1254580996.pdb or /var/tmp/from_scwrl_1254580996_b.pdb or /var/tmp/from_scwrl_1254580996_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1015816959.pdb -s /var/tmp/to_scwrl_1015816959.seq -o /var/tmp/from_scwrl_1015816959.pdb > /var/tmp/scwrl_1015816959.log Error: can't open any of /var/tmp/from_scwrl_1015816959.pdb or /var/tmp/from_scwrl_1015816959_b.pdb or /var/tmp/from_scwrl_1015816959_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_177623273.pdb -s /var/tmp/to_scwrl_177623273.seq -o /var/tmp/from_scwrl_177623273.pdb > /var/tmp/scwrl_177623273.log Error: can't open any of /var/tmp/from_scwrl_177623273.pdb or /var/tmp/from_scwrl_177623273_b.pdb or /var/tmp/from_scwrl_177623273_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_959068084.pdb -s /var/tmp/to_scwrl_959068084.seq -o /var/tmp/from_scwrl_959068084.pdb > /var/tmp/scwrl_959068084.log Error: can't open any of /var/tmp/from_scwrl_959068084.pdb or /var/tmp/from_scwrl_959068084_b.pdb or /var/tmp/from_scwrl_959068084_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1810944755.pdb -s /var/tmp/to_scwrl_1810944755.seq -o /var/tmp/from_scwrl_1810944755.pdb > /var/tmp/scwrl_1810944755.log Error: can't open any of /var/tmp/from_scwrl_1810944755.pdb or /var/tmp/from_scwrl_1810944755_b.pdb or /var/tmp/from_scwrl_1810944755_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1685802009.pdb -s /var/tmp/to_scwrl_1685802009.seq -o /var/tmp/from_scwrl_1685802009.pdb > /var/tmp/scwrl_1685802009.log Error: can't open any of /var/tmp/from_scwrl_1685802009.pdb or /var/tmp/from_scwrl_1685802009_b.pdb or /var/tmp/from_scwrl_1685802009_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_356400220.pdb -s /var/tmp/to_scwrl_356400220.seq -o /var/tmp/from_scwrl_356400220.pdb > /var/tmp/scwrl_356400220.log Error: can't open any of /var/tmp/from_scwrl_356400220.pdb or /var/tmp/from_scwrl_356400220_b.pdb or /var/tmp/from_scwrl_356400220_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1398019081.pdb -s /var/tmp/to_scwrl_1398019081.seq -o /var/tmp/from_scwrl_1398019081.pdb > /var/tmp/scwrl_1398019081.log Error: can't open any of /var/tmp/from_scwrl_1398019081.pdb or /var/tmp/from_scwrl_1398019081_b.pdb or /var/tmp/from_scwrl_1398019081_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_623388871.pdb -s /var/tmp/to_scwrl_623388871.seq -o /var/tmp/from_scwrl_623388871.pdb > /var/tmp/scwrl_623388871.log Error: can't open any of /var/tmp/from_scwrl_623388871.pdb or /var/tmp/from_scwrl_623388871_b.pdb or /var/tmp/from_scwrl_623388871_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_612307112.pdb -s /var/tmp/to_scwrl_612307112.seq -o /var/tmp/from_scwrl_612307112.pdb > /var/tmp/scwrl_612307112.log Error: can't open any of /var/tmp/from_scwrl_612307112.pdb or /var/tmp/from_scwrl_612307112_b.pdb or /var/tmp/from_scwrl_612307112_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_474846066.pdb -s /var/tmp/to_scwrl_474846066.seq -o /var/tmp/from_scwrl_474846066.pdb > /var/tmp/scwrl_474846066.log Error: can't open any of /var/tmp/from_scwrl_474846066.pdb or /var/tmp/from_scwrl_474846066_b.pdb or /var/tmp/from_scwrl_474846066_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1177658174.pdb -s /var/tmp/to_scwrl_1177658174.seq -o /var/tmp/from_scwrl_1177658174.pdb > /var/tmp/scwrl_1177658174.log Error: can't open any of /var/tmp/from_scwrl_1177658174.pdb or /var/tmp/from_scwrl_1177658174_b.pdb or /var/tmp/from_scwrl_1177658174_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_118648573.pdb -s /var/tmp/to_scwrl_118648573.seq -o /var/tmp/from_scwrl_118648573.pdb > /var/tmp/scwrl_118648573.log Error: can't open any of /var/tmp/from_scwrl_118648573.pdb or /var/tmp/from_scwrl_118648573_b.pdb or /var/tmp/from_scwrl_118648573_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1601785485.pdb -s /var/tmp/to_scwrl_1601785485.seq -o /var/tmp/from_scwrl_1601785485.pdb > /var/tmp/scwrl_1601785485.log Error: can't open any of /var/tmp/from_scwrl_1601785485.pdb or /var/tmp/from_scwrl_1601785485_b.pdb or /var/tmp/from_scwrl_1601785485_a.pdb Error: no new SCWRL conformation added # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2140422331.pdb -s /var/tmp/to_scwrl_2140422331.seq -o /var/tmp/from_scwrl_2140422331.pdb > /var/tmp/scwrl_2140422331.log Error: can't open any of /var/tmp/from_scwrl_2140422331.pdb or /var/tmp/from_scwrl_2140422331_b.pdb or /var/tmp/from_scwrl_2140422331_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_598308875.pdb -s /var/tmp/to_scwrl_598308875.seq -o /var/tmp/from_scwrl_598308875.pdb > /var/tmp/scwrl_598308875.log Error: can't open any of /var/tmp/from_scwrl_598308875.pdb or /var/tmp/from_scwrl_598308875_b.pdb or /var/tmp/from_scwrl_598308875_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2031406015.pdb -s /var/tmp/to_scwrl_2031406015.seq -o /var/tmp/from_scwrl_2031406015.pdb > /var/tmp/scwrl_2031406015.log Error: can't open any of /var/tmp/from_scwrl_2031406015.pdb or /var/tmp/from_scwrl_2031406015_b.pdb or /var/tmp/from_scwrl_2031406015_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1548414952.pdb -s /var/tmp/to_scwrl_1548414952.seq -o /var/tmp/from_scwrl_1548414952.pdb > /var/tmp/scwrl_1548414952.log Error: can't open any of /var/tmp/from_scwrl_1548414952.pdb or /var/tmp/from_scwrl_1548414952_b.pdb or /var/tmp/from_scwrl_1548414952_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1883651781.pdb -s /var/tmp/to_scwrl_1883651781.seq -o /var/tmp/from_scwrl_1883651781.pdb > /var/tmp/scwrl_1883651781.log Error: can't open any of /var/tmp/from_scwrl_1883651781.pdb or /var/tmp/from_scwrl_1883651781_b.pdb or /var/tmp/from_scwrl_1883651781_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1266866506.pdb -s /var/tmp/to_scwrl_1266866506.seq -o /var/tmp/from_scwrl_1266866506.pdb > /var/tmp/scwrl_1266866506.log Error: can't open any of /var/tmp/from_scwrl_1266866506.pdb or /var/tmp/from_scwrl_1266866506_b.pdb or /var/tmp/from_scwrl_1266866506_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_708771512.pdb -s /var/tmp/to_scwrl_708771512.seq -o /var/tmp/from_scwrl_708771512.pdb > /var/tmp/scwrl_708771512.log Error: can't open any of /var/tmp/from_scwrl_708771512.pdb or /var/tmp/from_scwrl_708771512_b.pdb or /var/tmp/from_scwrl_708771512_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1031716573.pdb -s /var/tmp/to_scwrl_1031716573.seq -o /var/tmp/from_scwrl_1031716573.pdb > /var/tmp/scwrl_1031716573.log Error: can't open any of /var/tmp/from_scwrl_1031716573.pdb or /var/tmp/from_scwrl_1031716573_b.pdb or /var/tmp/from_scwrl_1031716573_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2064413908.pdb -s /var/tmp/to_scwrl_2064413908.seq -o /var/tmp/from_scwrl_2064413908.pdb > /var/tmp/scwrl_2064413908.log Error: can't open any of /var/tmp/from_scwrl_2064413908.pdb or /var/tmp/from_scwrl_2064413908_b.pdb or /var/tmp/from_scwrl_2064413908_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1816005896.pdb -s /var/tmp/to_scwrl_1816005896.seq -o /var/tmp/from_scwrl_1816005896.pdb > /var/tmp/scwrl_1816005896.log Error: can't open any of /var/tmp/from_scwrl_1816005896.pdb or /var/tmp/from_scwrl_1816005896_b.pdb or /var/tmp/from_scwrl_1816005896_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1109557277.pdb -s /var/tmp/to_scwrl_1109557277.seq -o /var/tmp/from_scwrl_1109557277.pdb > /var/tmp/scwrl_1109557277.log Error: can't open any of /var/tmp/from_scwrl_1109557277.pdb or /var/tmp/from_scwrl_1109557277_b.pdb or /var/tmp/from_scwrl_1109557277_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1757368895.pdb -s /var/tmp/to_scwrl_1757368895.seq -o /var/tmp/from_scwrl_1757368895.pdb > /var/tmp/scwrl_1757368895.log Error: can't open any of /var/tmp/from_scwrl_1757368895.pdb or /var/tmp/from_scwrl_1757368895_b.pdb or /var/tmp/from_scwrl_1757368895_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_206110225.pdb -s /var/tmp/to_scwrl_206110225.seq -o /var/tmp/from_scwrl_206110225.pdb > /var/tmp/scwrl_206110225.log Error: can't open any of /var/tmp/from_scwrl_206110225.pdb or /var/tmp/from_scwrl_206110225_b.pdb or /var/tmp/from_scwrl_206110225_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1426542232.pdb -s /var/tmp/to_scwrl_1426542232.seq -o /var/tmp/from_scwrl_1426542232.pdb > /var/tmp/scwrl_1426542232.log Error: can't open any of /var/tmp/from_scwrl_1426542232.pdb or /var/tmp/from_scwrl_1426542232_b.pdb or /var/tmp/from_scwrl_1426542232_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_873482014.pdb -s /var/tmp/to_scwrl_873482014.seq -o /var/tmp/from_scwrl_873482014.pdb > /var/tmp/scwrl_873482014.log Error: can't open any of /var/tmp/from_scwrl_873482014.pdb or /var/tmp/from_scwrl_873482014_b.pdb or /var/tmp/from_scwrl_873482014_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1092685019.pdb -s /var/tmp/to_scwrl_1092685019.seq -o /var/tmp/from_scwrl_1092685019.pdb > /var/tmp/scwrl_1092685019.log Error: can't open any of /var/tmp/from_scwrl_1092685019.pdb or /var/tmp/from_scwrl_1092685019_b.pdb or /var/tmp/from_scwrl_1092685019_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1468680900.pdb -s /var/tmp/to_scwrl_1468680900.seq -o /var/tmp/from_scwrl_1468680900.pdb > /var/tmp/scwrl_1468680900.log Error: can't open any of /var/tmp/from_scwrl_1468680900.pdb or /var/tmp/from_scwrl_1468680900_b.pdb or /var/tmp/from_scwrl_1468680900_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2128063010.pdb -s /var/tmp/to_scwrl_2128063010.seq -o /var/tmp/from_scwrl_2128063010.pdb > /var/tmp/scwrl_2128063010.log Error: can't open any of /var/tmp/from_scwrl_2128063010.pdb or /var/tmp/from_scwrl_2128063010_b.pdb or /var/tmp/from_scwrl_2128063010_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2108501979.pdb -s /var/tmp/to_scwrl_2108501979.seq -o /var/tmp/from_scwrl_2108501979.pdb > /var/tmp/scwrl_2108501979.log Error: can't open any of /var/tmp/from_scwrl_2108501979.pdb or /var/tmp/from_scwrl_2108501979_b.pdb or /var/tmp/from_scwrl_2108501979_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1646304173.pdb -s /var/tmp/to_scwrl_1646304173.seq -o /var/tmp/from_scwrl_1646304173.pdb > /var/tmp/scwrl_1646304173.log Error: can't open any of /var/tmp/from_scwrl_1646304173.pdb or /var/tmp/from_scwrl_1646304173_b.pdb or /var/tmp/from_scwrl_1646304173_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_939647447.pdb -s /var/tmp/to_scwrl_939647447.seq -o /var/tmp/from_scwrl_939647447.pdb > /var/tmp/scwrl_939647447.log Error: can't open any of /var/tmp/from_scwrl_939647447.pdb or /var/tmp/from_scwrl_939647447_b.pdb or /var/tmp/from_scwrl_939647447_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1771963087.pdb -s /var/tmp/to_scwrl_1771963087.seq -o /var/tmp/from_scwrl_1771963087.pdb > /var/tmp/scwrl_1771963087.log Error: can't open any of /var/tmp/from_scwrl_1771963087.pdb or /var/tmp/from_scwrl_1771963087_b.pdb or /var/tmp/from_scwrl_1771963087_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1184622535.pdb -s /var/tmp/to_scwrl_1184622535.seq -o /var/tmp/from_scwrl_1184622535.pdb > /var/tmp/scwrl_1184622535.log Error: can't open any of /var/tmp/from_scwrl_1184622535.pdb or /var/tmp/from_scwrl_1184622535_b.pdb or /var/tmp/from_scwrl_1184622535_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1296047666.pdb -s /var/tmp/to_scwrl_1296047666.seq -o /var/tmp/from_scwrl_1296047666.pdb > /var/tmp/scwrl_1296047666.log Error: can't open any of /var/tmp/from_scwrl_1296047666.pdb or /var/tmp/from_scwrl_1296047666_b.pdb or /var/tmp/from_scwrl_1296047666_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1022498522.pdb -s /var/tmp/to_scwrl_1022498522.seq -o /var/tmp/from_scwrl_1022498522.pdb > /var/tmp/scwrl_1022498522.log Error: can't open any of /var/tmp/from_scwrl_1022498522.pdb or /var/tmp/from_scwrl_1022498522_b.pdb or /var/tmp/from_scwrl_1022498522_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1808011406.pdb -s /var/tmp/to_scwrl_1808011406.seq -o /var/tmp/from_scwrl_1808011406.pdb > /var/tmp/scwrl_1808011406.log Error: can't open any of /var/tmp/from_scwrl_1808011406.pdb or /var/tmp/from_scwrl_1808011406_b.pdb or /var/tmp/from_scwrl_1808011406_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1908354779.pdb -s /var/tmp/to_scwrl_1908354779.seq -o /var/tmp/from_scwrl_1908354779.pdb > /var/tmp/scwrl_1908354779.log Error: can't open any of /var/tmp/from_scwrl_1908354779.pdb or /var/tmp/from_scwrl_1908354779_b.pdb or /var/tmp/from_scwrl_1908354779_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1497344587.pdb -s /var/tmp/to_scwrl_1497344587.seq -o /var/tmp/from_scwrl_1497344587.pdb > /var/tmp/scwrl_1497344587.log Error: can't open any of /var/tmp/from_scwrl_1497344587.pdb or /var/tmp/from_scwrl_1497344587_b.pdb or /var/tmp/from_scwrl_1497344587_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_838185934.pdb -s /var/tmp/to_scwrl_838185934.seq -o /var/tmp/from_scwrl_838185934.pdb > /var/tmp/scwrl_838185934.log Error: can't open any of /var/tmp/from_scwrl_838185934.pdb or /var/tmp/from_scwrl_838185934_b.pdb or /var/tmp/from_scwrl_838185934_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2027003352.pdb -s /var/tmp/to_scwrl_2027003352.seq -o /var/tmp/from_scwrl_2027003352.pdb > /var/tmp/scwrl_2027003352.log Error: can't open any of /var/tmp/from_scwrl_2027003352.pdb or /var/tmp/from_scwrl_2027003352_b.pdb or /var/tmp/from_scwrl_2027003352_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_951646426.pdb -s /var/tmp/to_scwrl_951646426.seq -o /var/tmp/from_scwrl_951646426.pdb > /var/tmp/scwrl_951646426.log Error: can't open any of /var/tmp/from_scwrl_951646426.pdb or /var/tmp/from_scwrl_951646426_b.pdb or /var/tmp/from_scwrl_951646426_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_831124618.pdb -s /var/tmp/to_scwrl_831124618.seq -o /var/tmp/from_scwrl_831124618.pdb > /var/tmp/scwrl_831124618.log Error: can't open any of /var/tmp/from_scwrl_831124618.pdb or /var/tmp/from_scwrl_831124618_b.pdb or /var/tmp/from_scwrl_831124618_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_477828581.pdb -s /var/tmp/to_scwrl_477828581.seq -o /var/tmp/from_scwrl_477828581.pdb > /var/tmp/scwrl_477828581.log Error: can't open any of /var/tmp/from_scwrl_477828581.pdb or /var/tmp/from_scwrl_477828581_b.pdb or /var/tmp/from_scwrl_477828581_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_835568794.pdb -s /var/tmp/to_scwrl_835568794.seq -o /var/tmp/from_scwrl_835568794.pdb > /var/tmp/scwrl_835568794.log Error: can't open any of /var/tmp/from_scwrl_835568794.pdb or /var/tmp/from_scwrl_835568794_b.pdb or /var/tmp/from_scwrl_835568794_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_232055924.pdb -s /var/tmp/to_scwrl_232055924.seq -o /var/tmp/from_scwrl_232055924.pdb > /var/tmp/scwrl_232055924.log Error: can't open any of /var/tmp/from_scwrl_232055924.pdb or /var/tmp/from_scwrl_232055924_b.pdb or /var/tmp/from_scwrl_232055924_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_213996715.pdb -s /var/tmp/to_scwrl_213996715.seq -o /var/tmp/from_scwrl_213996715.pdb > /var/tmp/scwrl_213996715.log Error: can't open any of /var/tmp/from_scwrl_213996715.pdb or /var/tmp/from_scwrl_213996715_b.pdb or /var/tmp/from_scwrl_213996715_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2102435301.pdb -s /var/tmp/to_scwrl_2102435301.seq -o /var/tmp/from_scwrl_2102435301.pdb > /var/tmp/scwrl_2102435301.log Error: can't open any of /var/tmp/from_scwrl_2102435301.pdb or /var/tmp/from_scwrl_2102435301_b.pdb or /var/tmp/from_scwrl_2102435301_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_940827436.pdb -s /var/tmp/to_scwrl_940827436.seq -o /var/tmp/from_scwrl_940827436.pdb > /var/tmp/scwrl_940827436.log Error: can't open any of /var/tmp/from_scwrl_940827436.pdb or /var/tmp/from_scwrl_940827436_b.pdb or /var/tmp/from_scwrl_940827436_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1245713287.pdb -s /var/tmp/to_scwrl_1245713287.seq -o /var/tmp/from_scwrl_1245713287.pdb > /var/tmp/scwrl_1245713287.log Error: can't open any of /var/tmp/from_scwrl_1245713287.pdb or /var/tmp/from_scwrl_1245713287_b.pdb or /var/tmp/from_scwrl_1245713287_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2019365562.pdb -s /var/tmp/to_scwrl_2019365562.seq -o /var/tmp/from_scwrl_2019365562.pdb > /var/tmp/scwrl_2019365562.log Error: can't open any of /var/tmp/from_scwrl_2019365562.pdb or /var/tmp/from_scwrl_2019365562_b.pdb or /var/tmp/from_scwrl_2019365562_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_609349686.pdb -s /var/tmp/to_scwrl_609349686.seq -o /var/tmp/from_scwrl_609349686.pdb > /var/tmp/scwrl_609349686.log Error: can't open any of /var/tmp/from_scwrl_609349686.pdb or /var/tmp/from_scwrl_609349686_b.pdb or /var/tmp/from_scwrl_609349686_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_207786919.pdb -s /var/tmp/to_scwrl_207786919.seq -o /var/tmp/from_scwrl_207786919.pdb > /var/tmp/scwrl_207786919.log Error: can't open any of /var/tmp/from_scwrl_207786919.pdb or /var/tmp/from_scwrl_207786919_b.pdb or /var/tmp/from_scwrl_207786919_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1629250810.pdb -s /var/tmp/to_scwrl_1629250810.seq -o /var/tmp/from_scwrl_1629250810.pdb > /var/tmp/scwrl_1629250810.log Error: can't open any of /var/tmp/from_scwrl_1629250810.pdb or /var/tmp/from_scwrl_1629250810_b.pdb or /var/tmp/from_scwrl_1629250810_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_815459911.pdb -s /var/tmp/to_scwrl_815459911.seq -o /var/tmp/from_scwrl_815459911.pdb > /var/tmp/scwrl_815459911.log Error: can't open any of /var/tmp/from_scwrl_815459911.pdb or /var/tmp/from_scwrl_815459911_b.pdb or /var/tmp/from_scwrl_815459911_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1634329151.pdb -s /var/tmp/to_scwrl_1634329151.seq -o /var/tmp/from_scwrl_1634329151.pdb > /var/tmp/scwrl_1634329151.log Error: can't open any of /var/tmp/from_scwrl_1634329151.pdb or /var/tmp/from_scwrl_1634329151_b.pdb or /var/tmp/from_scwrl_1634329151_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_355249177.pdb -s /var/tmp/to_scwrl_355249177.seq -o /var/tmp/from_scwrl_355249177.pdb > /var/tmp/scwrl_355249177.log Error: can't open any of /var/tmp/from_scwrl_355249177.pdb or /var/tmp/from_scwrl_355249177_b.pdb or /var/tmp/from_scwrl_355249177_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1908144931.pdb -s /var/tmp/to_scwrl_1908144931.seq -o /var/tmp/from_scwrl_1908144931.pdb > /var/tmp/scwrl_1908144931.log Error: can't open any of /var/tmp/from_scwrl_1908144931.pdb or /var/tmp/from_scwrl_1908144931_b.pdb or /var/tmp/from_scwrl_1908144931_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_955526405.pdb -s /var/tmp/to_scwrl_955526405.seq -o /var/tmp/from_scwrl_955526405.pdb > /var/tmp/scwrl_955526405.log Error: can't open any of /var/tmp/from_scwrl_955526405.pdb or /var/tmp/from_scwrl_955526405_b.pdb or /var/tmp/from_scwrl_955526405_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_335828540.pdb -s /var/tmp/to_scwrl_335828540.seq -o /var/tmp/from_scwrl_335828540.pdb > /var/tmp/scwrl_335828540.log Error: can't open any of /var/tmp/from_scwrl_335828540.pdb or /var/tmp/from_scwrl_335828540_b.pdb or /var/tmp/from_scwrl_335828540_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1869163263.pdb -s /var/tmp/to_scwrl_1869163263.seq -o /var/tmp/from_scwrl_1869163263.pdb > /var/tmp/scwrl_1869163263.log Error: can't open any of /var/tmp/from_scwrl_1869163263.pdb or /var/tmp/from_scwrl_1869163263_b.pdb or /var/tmp/from_scwrl_1869163263_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_454346931.pdb -s /var/tmp/to_scwrl_454346931.seq -o /var/tmp/from_scwrl_454346931.pdb > /var/tmp/scwrl_454346931.log Error: can't open any of /var/tmp/from_scwrl_454346931.pdb or /var/tmp/from_scwrl_454346931_b.pdb or /var/tmp/from_scwrl_454346931_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1275475986.pdb -s /var/tmp/to_scwrl_1275475986.seq -o /var/tmp/from_scwrl_1275475986.pdb > /var/tmp/scwrl_1275475986.log Error: can't open any of /var/tmp/from_scwrl_1275475986.pdb or /var/tmp/from_scwrl_1275475986_b.pdb or /var/tmp/from_scwrl_1275475986_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1493642703.pdb -s /var/tmp/to_scwrl_1493642703.seq -o /var/tmp/from_scwrl_1493642703.pdb > /var/tmp/scwrl_1493642703.log Error: can't open any of /var/tmp/from_scwrl_1493642703.pdb or /var/tmp/from_scwrl_1493642703_b.pdb or /var/tmp/from_scwrl_1493642703_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1638969466.pdb -s /var/tmp/to_scwrl_1638969466.seq -o /var/tmp/from_scwrl_1638969466.pdb > /var/tmp/scwrl_1638969466.log Error: can't open any of /var/tmp/from_scwrl_1638969466.pdb or /var/tmp/from_scwrl_1638969466_b.pdb or /var/tmp/from_scwrl_1638969466_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_424040007.pdb -s /var/tmp/to_scwrl_424040007.seq -o /var/tmp/from_scwrl_424040007.pdb > /var/tmp/scwrl_424040007.log Error: can't open any of /var/tmp/from_scwrl_424040007.pdb or /var/tmp/from_scwrl_424040007_b.pdb or /var/tmp/from_scwrl_424040007_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_368657578.pdb -s /var/tmp/to_scwrl_368657578.seq -o /var/tmp/from_scwrl_368657578.pdb > /var/tmp/scwrl_368657578.log Error: can't open any of /var/tmp/from_scwrl_368657578.pdb or /var/tmp/from_scwrl_368657578_b.pdb or /var/tmp/from_scwrl_368657578_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1299497225.pdb -s /var/tmp/to_scwrl_1299497225.seq -o /var/tmp/from_scwrl_1299497225.pdb > /var/tmp/scwrl_1299497225.log Error: can't open any of /var/tmp/from_scwrl_1299497225.pdb or /var/tmp/from_scwrl_1299497225_b.pdb or /var/tmp/from_scwrl_1299497225_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_184911139.pdb -s /var/tmp/to_scwrl_184911139.seq -o /var/tmp/from_scwrl_184911139.pdb > /var/tmp/scwrl_184911139.log Error: can't open any of /var/tmp/from_scwrl_184911139.pdb or /var/tmp/from_scwrl_184911139_b.pdb or /var/tmp/from_scwrl_184911139_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1866002166.pdb -s /var/tmp/to_scwrl_1866002166.seq -o /var/tmp/from_scwrl_1866002166.pdb > /var/tmp/scwrl_1866002166.log Error: can't open any of /var/tmp/from_scwrl_1866002166.pdb or /var/tmp/from_scwrl_1866002166_b.pdb or /var/tmp/from_scwrl_1866002166_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2137683159.pdb -s /var/tmp/to_scwrl_2137683159.seq -o /var/tmp/from_scwrl_2137683159.pdb > /var/tmp/scwrl_2137683159.log Error: can't open any of /var/tmp/from_scwrl_2137683159.pdb or /var/tmp/from_scwrl_2137683159_b.pdb or /var/tmp/from_scwrl_2137683159_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_64430844.pdb -s /var/tmp/to_scwrl_64430844.seq -o /var/tmp/from_scwrl_64430844.pdb > /var/tmp/scwrl_64430844.log Error: can't open any of /var/tmp/from_scwrl_64430844.pdb or /var/tmp/from_scwrl_64430844_b.pdb or /var/tmp/from_scwrl_64430844_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_670164945.pdb -s /var/tmp/to_scwrl_670164945.seq -o /var/tmp/from_scwrl_670164945.pdb > /var/tmp/scwrl_670164945.log Error: can't open any of /var/tmp/from_scwrl_670164945.pdb or /var/tmp/from_scwrl_670164945_b.pdb or /var/tmp/from_scwrl_670164945_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_821324131.pdb -s /var/tmp/to_scwrl_821324131.seq -o /var/tmp/from_scwrl_821324131.pdb > /var/tmp/scwrl_821324131.log Error: can't open any of /var/tmp/from_scwrl_821324131.pdb or /var/tmp/from_scwrl_821324131_b.pdb or /var/tmp/from_scwrl_821324131_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_542259425.pdb -s /var/tmp/to_scwrl_542259425.seq -o /var/tmp/from_scwrl_542259425.pdb > /var/tmp/scwrl_542259425.log Error: can't open any of /var/tmp/from_scwrl_542259425.pdb or /var/tmp/from_scwrl_542259425_b.pdb or /var/tmp/from_scwrl_542259425_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1505733739.pdb -s /var/tmp/to_scwrl_1505733739.seq -o /var/tmp/from_scwrl_1505733739.pdb > /var/tmp/scwrl_1505733739.log Error: can't open any of /var/tmp/from_scwrl_1505733739.pdb or /var/tmp/from_scwrl_1505733739_b.pdb or /var/tmp/from_scwrl_1505733739_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1053380055.pdb -s /var/tmp/to_scwrl_1053380055.seq -o /var/tmp/from_scwrl_1053380055.pdb > /var/tmp/scwrl_1053380055.log Error: can't open any of /var/tmp/from_scwrl_1053380055.pdb or /var/tmp/from_scwrl_1053380055_b.pdb or /var/tmp/from_scwrl_1053380055_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS1-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_756256141.pdb -s /var/tmp/to_scwrl_756256141.seq -o /var/tmp/from_scwrl_756256141.pdb > /var/tmp/scwrl_756256141.log Error: can't open any of /var/tmp/from_scwrl_756256141.pdb or /var/tmp/from_scwrl_756256141_b.pdb or /var/tmp/from_scwrl_756256141_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS2-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1460685393.pdb -s /var/tmp/to_scwrl_1460685393.seq -o /var/tmp/from_scwrl_1460685393.pdb > /var/tmp/scwrl_1460685393.log Error: can't open any of /var/tmp/from_scwrl_1460685393.pdb or /var/tmp/from_scwrl_1460685393_b.pdb or /var/tmp/from_scwrl_1460685393_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1994207490.pdb -s /var/tmp/to_scwrl_1994207490.seq -o /var/tmp/from_scwrl_1994207490.pdb > /var/tmp/scwrl_1994207490.log Error: can't open any of /var/tmp/from_scwrl_1994207490.pdb or /var/tmp/from_scwrl_1994207490_b.pdb or /var/tmp/from_scwrl_1994207490_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2001969428.pdb -s /var/tmp/to_scwrl_2001969428.seq -o /var/tmp/from_scwrl_2001969428.pdb > /var/tmp/scwrl_2001969428.log Error: can't open any of /var/tmp/from_scwrl_2001969428.pdb or /var/tmp/from_scwrl_2001969428_b.pdb or /var/tmp/from_scwrl_2001969428_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1332567308.pdb -s /var/tmp/to_scwrl_1332567308.seq -o /var/tmp/from_scwrl_1332567308.pdb > /var/tmp/scwrl_1332567308.log Error: can't open any of /var/tmp/from_scwrl_1332567308.pdb or /var/tmp/from_scwrl_1332567308_b.pdb or /var/tmp/from_scwrl_1332567308_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_456073529.pdb -s /var/tmp/to_scwrl_456073529.seq -o /var/tmp/from_scwrl_456073529.pdb > /var/tmp/scwrl_456073529.log Error: can't open any of /var/tmp/from_scwrl_456073529.pdb or /var/tmp/from_scwrl_456073529_b.pdb or /var/tmp/from_scwrl_456073529_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_62272700.pdb -s /var/tmp/to_scwrl_62272700.seq -o /var/tmp/from_scwrl_62272700.pdb > /var/tmp/scwrl_62272700.log Error: can't open any of /var/tmp/from_scwrl_62272700.pdb or /var/tmp/from_scwrl_62272700_b.pdb or /var/tmp/from_scwrl_62272700_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_814334472.pdb -s /var/tmp/to_scwrl_814334472.seq -o /var/tmp/from_scwrl_814334472.pdb > /var/tmp/scwrl_814334472.log Error: can't open any of /var/tmp/from_scwrl_814334472.pdb or /var/tmp/from_scwrl_814334472_b.pdb or /var/tmp/from_scwrl_814334472_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1271533440.pdb -s /var/tmp/to_scwrl_1271533440.seq -o /var/tmp/from_scwrl_1271533440.pdb > /var/tmp/scwrl_1271533440.log Error: can't open any of /var/tmp/from_scwrl_1271533440.pdb or /var/tmp/from_scwrl_1271533440_b.pdb or /var/tmp/from_scwrl_1271533440_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1696601851.pdb -s /var/tmp/to_scwrl_1696601851.seq -o /var/tmp/from_scwrl_1696601851.pdb > /var/tmp/scwrl_1696601851.log Error: can't open any of /var/tmp/from_scwrl_1696601851.pdb or /var/tmp/from_scwrl_1696601851_b.pdb or /var/tmp/from_scwrl_1696601851_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1169583649.pdb -s /var/tmp/to_scwrl_1169583649.seq -o /var/tmp/from_scwrl_1169583649.pdb > /var/tmp/scwrl_1169583649.log Error: can't open any of /var/tmp/from_scwrl_1169583649.pdb or /var/tmp/from_scwrl_1169583649_b.pdb or /var/tmp/from_scwrl_1169583649_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1032194725.pdb -s /var/tmp/to_scwrl_1032194725.seq -o /var/tmp/from_scwrl_1032194725.pdb > /var/tmp/scwrl_1032194725.log Error: can't open any of /var/tmp/from_scwrl_1032194725.pdb or /var/tmp/from_scwrl_1032194725_b.pdb or /var/tmp/from_scwrl_1032194725_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_504644609.pdb -s /var/tmp/to_scwrl_504644609.seq -o /var/tmp/from_scwrl_504644609.pdb > /var/tmp/scwrl_504644609.log Error: can't open any of /var/tmp/from_scwrl_504644609.pdb or /var/tmp/from_scwrl_504644609_b.pdb or /var/tmp/from_scwrl_504644609_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1505412189.pdb -s /var/tmp/to_scwrl_1505412189.seq -o /var/tmp/from_scwrl_1505412189.pdb > /var/tmp/scwrl_1505412189.log Error: can't open any of /var/tmp/from_scwrl_1505412189.pdb or /var/tmp/from_scwrl_1505412189_b.pdb or /var/tmp/from_scwrl_1505412189_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_753874341.pdb -s /var/tmp/to_scwrl_753874341.seq -o /var/tmp/from_scwrl_753874341.pdb > /var/tmp/scwrl_753874341.log Error: can't open any of /var/tmp/from_scwrl_753874341.pdb or /var/tmp/from_scwrl_753874341_b.pdb or /var/tmp/from_scwrl_753874341_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_958991540.pdb -s /var/tmp/to_scwrl_958991540.seq -o /var/tmp/from_scwrl_958991540.pdb > /var/tmp/scwrl_958991540.log Error: can't open any of /var/tmp/from_scwrl_958991540.pdb or /var/tmp/from_scwrl_958991540_b.pdb or /var/tmp/from_scwrl_958991540_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_633404530.pdb -s /var/tmp/to_scwrl_633404530.seq -o /var/tmp/from_scwrl_633404530.pdb > /var/tmp/scwrl_633404530.log Error: can't open any of /var/tmp/from_scwrl_633404530.pdb or /var/tmp/from_scwrl_633404530_b.pdb or /var/tmp/from_scwrl_633404530_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_100033397.pdb -s /var/tmp/to_scwrl_100033397.seq -o /var/tmp/from_scwrl_100033397.pdb > /var/tmp/scwrl_100033397.log Error: can't open any of /var/tmp/from_scwrl_100033397.pdb or /var/tmp/from_scwrl_100033397_b.pdb or /var/tmp/from_scwrl_100033397_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_450477359.pdb -s /var/tmp/to_scwrl_450477359.seq -o /var/tmp/from_scwrl_450477359.pdb > /var/tmp/scwrl_450477359.log Error: can't open any of /var/tmp/from_scwrl_450477359.pdb or /var/tmp/from_scwrl_450477359_b.pdb or /var/tmp/from_scwrl_450477359_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1057444537.pdb -s /var/tmp/to_scwrl_1057444537.seq -o /var/tmp/from_scwrl_1057444537.pdb > /var/tmp/scwrl_1057444537.log Error: can't open any of /var/tmp/from_scwrl_1057444537.pdb or /var/tmp/from_scwrl_1057444537_b.pdb or /var/tmp/from_scwrl_1057444537_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_468690975.pdb -s /var/tmp/to_scwrl_468690975.seq -o /var/tmp/from_scwrl_468690975.pdb > /var/tmp/scwrl_468690975.log Error: can't open any of /var/tmp/from_scwrl_468690975.pdb or /var/tmp/from_scwrl_468690975_b.pdb or /var/tmp/from_scwrl_468690975_a.pdb Error: no new SCWRL conformation added # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1749974584.pdb -s /var/tmp/to_scwrl_1749974584.seq -o /var/tmp/from_scwrl_1749974584.pdb > /var/tmp/scwrl_1749974584.log Error: can't open any of /var/tmp/from_scwrl_1749974584.pdb or /var/tmp/from_scwrl_1749974584_b.pdb or /var/tmp/from_scwrl_1749974584_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1242355675.pdb -s /var/tmp/to_scwrl_1242355675.seq -o /var/tmp/from_scwrl_1242355675.pdb > /var/tmp/scwrl_1242355675.log Error: can't open any of /var/tmp/from_scwrl_1242355675.pdb or /var/tmp/from_scwrl_1242355675_b.pdb or /var/tmp/from_scwrl_1242355675_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_187209494.pdb -s /var/tmp/to_scwrl_187209494.seq -o /var/tmp/from_scwrl_187209494.pdb > /var/tmp/scwrl_187209494.log Error: can't open any of /var/tmp/from_scwrl_187209494.pdb or /var/tmp/from_scwrl_187209494_b.pdb or /var/tmp/from_scwrl_187209494_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1740174097.pdb -s /var/tmp/to_scwrl_1740174097.seq -o /var/tmp/from_scwrl_1740174097.pdb > /var/tmp/scwrl_1740174097.log Error: can't open any of /var/tmp/from_scwrl_1740174097.pdb or /var/tmp/from_scwrl_1740174097_b.pdb or /var/tmp/from_scwrl_1740174097_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1306786519.pdb -s /var/tmp/to_scwrl_1306786519.seq -o /var/tmp/from_scwrl_1306786519.pdb > /var/tmp/scwrl_1306786519.log Error: can't open any of /var/tmp/from_scwrl_1306786519.pdb or /var/tmp/from_scwrl_1306786519_b.pdb or /var/tmp/from_scwrl_1306786519_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_857374440.pdb -s /var/tmp/to_scwrl_857374440.seq -o /var/tmp/from_scwrl_857374440.pdb > /var/tmp/scwrl_857374440.log Error: can't open any of /var/tmp/from_scwrl_857374440.pdb or /var/tmp/from_scwrl_857374440_b.pdb or /var/tmp/from_scwrl_857374440_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_414014581.pdb -s /var/tmp/to_scwrl_414014581.seq -o /var/tmp/from_scwrl_414014581.pdb > /var/tmp/scwrl_414014581.log Error: can't open any of /var/tmp/from_scwrl_414014581.pdb or /var/tmp/from_scwrl_414014581_b.pdb or /var/tmp/from_scwrl_414014581_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1849045945.pdb -s /var/tmp/to_scwrl_1849045945.seq -o /var/tmp/from_scwrl_1849045945.pdb > /var/tmp/scwrl_1849045945.log Error: can't open any of /var/tmp/from_scwrl_1849045945.pdb or /var/tmp/from_scwrl_1849045945_b.pdb or /var/tmp/from_scwrl_1849045945_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 37 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_215624532.pdb -s /var/tmp/to_scwrl_215624532.seq -o /var/tmp/from_scwrl_215624532.pdb > /var/tmp/scwrl_215624532.log Error: can't open any of /var/tmp/from_scwrl_215624532.pdb or /var/tmp/from_scwrl_215624532_b.pdb or /var/tmp/from_scwrl_215624532_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1467394635.pdb -s /var/tmp/to_scwrl_1467394635.seq -o /var/tmp/from_scwrl_1467394635.pdb > /var/tmp/scwrl_1467394635.log Error: can't open any of /var/tmp/from_scwrl_1467394635.pdb or /var/tmp/from_scwrl_1467394635_b.pdb or /var/tmp/from_scwrl_1467394635_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_457818439.pdb -s /var/tmp/to_scwrl_457818439.seq -o /var/tmp/from_scwrl_457818439.pdb > /var/tmp/scwrl_457818439.log Error: can't open any of /var/tmp/from_scwrl_457818439.pdb or /var/tmp/from_scwrl_457818439_b.pdb or /var/tmp/from_scwrl_457818439_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1676309925.pdb -s /var/tmp/to_scwrl_1676309925.seq -o /var/tmp/from_scwrl_1676309925.pdb > /var/tmp/scwrl_1676309925.log Error: can't open any of /var/tmp/from_scwrl_1676309925.pdb or /var/tmp/from_scwrl_1676309925_b.pdb or /var/tmp/from_scwrl_1676309925_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1314118478.pdb -s /var/tmp/to_scwrl_1314118478.seq -o /var/tmp/from_scwrl_1314118478.pdb > /var/tmp/scwrl_1314118478.log Error: can't open any of /var/tmp/from_scwrl_1314118478.pdb or /var/tmp/from_scwrl_1314118478_b.pdb or /var/tmp/from_scwrl_1314118478_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_312304220.pdb -s /var/tmp/to_scwrl_312304220.seq -o /var/tmp/from_scwrl_312304220.pdb > /var/tmp/scwrl_312304220.log Error: can't open any of /var/tmp/from_scwrl_312304220.pdb or /var/tmp/from_scwrl_312304220_b.pdb or /var/tmp/from_scwrl_312304220_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_861393587.pdb -s /var/tmp/to_scwrl_861393587.seq -o /var/tmp/from_scwrl_861393587.pdb > /var/tmp/scwrl_861393587.log Error: can't open any of /var/tmp/from_scwrl_861393587.pdb or /var/tmp/from_scwrl_861393587_b.pdb or /var/tmp/from_scwrl_861393587_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1770192008.pdb -s /var/tmp/to_scwrl_1770192008.seq -o /var/tmp/from_scwrl_1770192008.pdb > /var/tmp/scwrl_1770192008.log Error: can't open any of /var/tmp/from_scwrl_1770192008.pdb or /var/tmp/from_scwrl_1770192008_b.pdb or /var/tmp/from_scwrl_1770192008_a.pdb Error: no new SCWRL conformation added # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_374576921.pdb -s /var/tmp/to_scwrl_374576921.seq -o /var/tmp/from_scwrl_374576921.pdb > /var/tmp/scwrl_374576921.log Error: can't open any of /var/tmp/from_scwrl_374576921.pdb or /var/tmp/from_scwrl_374576921_b.pdb or /var/tmp/from_scwrl_374576921_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1675728058.pdb -s /var/tmp/to_scwrl_1675728058.seq -o /var/tmp/from_scwrl_1675728058.pdb > /var/tmp/scwrl_1675728058.log Error: can't open any of /var/tmp/from_scwrl_1675728058.pdb or /var/tmp/from_scwrl_1675728058_b.pdb or /var/tmp/from_scwrl_1675728058_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_894241802.pdb -s /var/tmp/to_scwrl_894241802.seq -o /var/tmp/from_scwrl_894241802.pdb > /var/tmp/scwrl_894241802.log Error: can't open any of /var/tmp/from_scwrl_894241802.pdb or /var/tmp/from_scwrl_894241802_b.pdb or /var/tmp/from_scwrl_894241802_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2071178772.pdb -s /var/tmp/to_scwrl_2071178772.seq -o /var/tmp/from_scwrl_2071178772.pdb > /var/tmp/scwrl_2071178772.log Error: can't open any of /var/tmp/from_scwrl_2071178772.pdb or /var/tmp/from_scwrl_2071178772_b.pdb or /var/tmp/from_scwrl_2071178772_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_697828061.pdb -s /var/tmp/to_scwrl_697828061.seq -o /var/tmp/from_scwrl_697828061.pdb > /var/tmp/scwrl_697828061.log Error: can't open any of /var/tmp/from_scwrl_697828061.pdb or /var/tmp/from_scwrl_697828061_b.pdb or /var/tmp/from_scwrl_697828061_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1926436526.pdb -s /var/tmp/to_scwrl_1926436526.seq -o /var/tmp/from_scwrl_1926436526.pdb > /var/tmp/scwrl_1926436526.log Error: can't open any of /var/tmp/from_scwrl_1926436526.pdb or /var/tmp/from_scwrl_1926436526_b.pdb or /var/tmp/from_scwrl_1926436526_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_428339735.pdb -s /var/tmp/to_scwrl_428339735.seq -o /var/tmp/from_scwrl_428339735.pdb > /var/tmp/scwrl_428339735.log Error: can't open any of /var/tmp/from_scwrl_428339735.pdb or /var/tmp/from_scwrl_428339735_b.pdb or /var/tmp/from_scwrl_428339735_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_55756604.pdb -s /var/tmp/to_scwrl_55756604.seq -o /var/tmp/from_scwrl_55756604.pdb > /var/tmp/scwrl_55756604.log Error: can't open any of /var/tmp/from_scwrl_55756604.pdb or /var/tmp/from_scwrl_55756604_b.pdb or /var/tmp/from_scwrl_55756604_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_532827220.pdb -s /var/tmp/to_scwrl_532827220.seq -o /var/tmp/from_scwrl_532827220.pdb > /var/tmp/scwrl_532827220.log Error: can't open any of /var/tmp/from_scwrl_532827220.pdb or /var/tmp/from_scwrl_532827220_b.pdb or /var/tmp/from_scwrl_532827220_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1387331274.pdb -s /var/tmp/to_scwrl_1387331274.seq -o /var/tmp/from_scwrl_1387331274.pdb > /var/tmp/scwrl_1387331274.log Error: can't open any of /var/tmp/from_scwrl_1387331274.pdb or /var/tmp/from_scwrl_1387331274_b.pdb or /var/tmp/from_scwrl_1387331274_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_689161134.pdb -s /var/tmp/to_scwrl_689161134.seq -o /var/tmp/from_scwrl_689161134.pdb > /var/tmp/scwrl_689161134.log Error: can't open any of /var/tmp/from_scwrl_689161134.pdb or /var/tmp/from_scwrl_689161134_b.pdb or /var/tmp/from_scwrl_689161134_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_632860617.pdb -s /var/tmp/to_scwrl_632860617.seq -o /var/tmp/from_scwrl_632860617.pdb > /var/tmp/scwrl_632860617.log Error: can't open any of /var/tmp/from_scwrl_632860617.pdb or /var/tmp/from_scwrl_632860617_b.pdb or /var/tmp/from_scwrl_632860617_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1837808634.pdb -s /var/tmp/to_scwrl_1837808634.seq -o /var/tmp/from_scwrl_1837808634.pdb > /var/tmp/scwrl_1837808634.log Error: can't open any of /var/tmp/from_scwrl_1837808634.pdb or /var/tmp/from_scwrl_1837808634_b.pdb or /var/tmp/from_scwrl_1837808634_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1746605670.pdb -s /var/tmp/to_scwrl_1746605670.seq -o /var/tmp/from_scwrl_1746605670.pdb > /var/tmp/scwrl_1746605670.log Error: can't open any of /var/tmp/from_scwrl_1746605670.pdb or /var/tmp/from_scwrl_1746605670_b.pdb or /var/tmp/from_scwrl_1746605670_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1101551591.pdb -s /var/tmp/to_scwrl_1101551591.seq -o /var/tmp/from_scwrl_1101551591.pdb > /var/tmp/scwrl_1101551591.log Error: can't open any of /var/tmp/from_scwrl_1101551591.pdb or /var/tmp/from_scwrl_1101551591_b.pdb or /var/tmp/from_scwrl_1101551591_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1440299571.pdb -s /var/tmp/to_scwrl_1440299571.seq -o /var/tmp/from_scwrl_1440299571.pdb > /var/tmp/scwrl_1440299571.log Error: can't open any of /var/tmp/from_scwrl_1440299571.pdb or /var/tmp/from_scwrl_1440299571_b.pdb or /var/tmp/from_scwrl_1440299571_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_841477699.pdb -s /var/tmp/to_scwrl_841477699.seq -o /var/tmp/from_scwrl_841477699.pdb > /var/tmp/scwrl_841477699.log Error: can't open any of /var/tmp/from_scwrl_841477699.pdb or /var/tmp/from_scwrl_841477699_b.pdb or /var/tmp/from_scwrl_841477699_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1288761086.pdb -s /var/tmp/to_scwrl_1288761086.seq -o /var/tmp/from_scwrl_1288761086.pdb > /var/tmp/scwrl_1288761086.log Error: can't open any of /var/tmp/from_scwrl_1288761086.pdb or /var/tmp/from_scwrl_1288761086_b.pdb or /var/tmp/from_scwrl_1288761086_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1032990022.pdb -s /var/tmp/to_scwrl_1032990022.seq -o /var/tmp/from_scwrl_1032990022.pdb > /var/tmp/scwrl_1032990022.log Error: can't open any of /var/tmp/from_scwrl_1032990022.pdb or /var/tmp/from_scwrl_1032990022_b.pdb or /var/tmp/from_scwrl_1032990022_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_780571.pdb -s /var/tmp/to_scwrl_780571.seq -o /var/tmp/from_scwrl_780571.pdb > /var/tmp/scwrl_780571.log Error: can't open any of /var/tmp/from_scwrl_780571.pdb or /var/tmp/from_scwrl_780571_b.pdb or /var/tmp/from_scwrl_780571_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2146135526.pdb -s /var/tmp/to_scwrl_2146135526.seq -o /var/tmp/from_scwrl_2146135526.pdb > /var/tmp/scwrl_2146135526.log Error: can't open any of /var/tmp/from_scwrl_2146135526.pdb or /var/tmp/from_scwrl_2146135526_b.pdb or /var/tmp/from_scwrl_2146135526_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1447004602.pdb -s /var/tmp/to_scwrl_1447004602.seq -o /var/tmp/from_scwrl_1447004602.pdb > /var/tmp/scwrl_1447004602.log Error: can't open any of /var/tmp/from_scwrl_1447004602.pdb or /var/tmp/from_scwrl_1447004602_b.pdb or /var/tmp/from_scwrl_1447004602_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1849826516.pdb -s /var/tmp/to_scwrl_1849826516.seq -o /var/tmp/from_scwrl_1849826516.pdb > /var/tmp/scwrl_1849826516.log Error: can't open any of /var/tmp/from_scwrl_1849826516.pdb or /var/tmp/from_scwrl_1849826516_b.pdb or /var/tmp/from_scwrl_1849826516_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_214276411.pdb -s /var/tmp/to_scwrl_214276411.seq -o /var/tmp/from_scwrl_214276411.pdb > /var/tmp/scwrl_214276411.log Error: can't open any of /var/tmp/from_scwrl_214276411.pdb or /var/tmp/from_scwrl_214276411_b.pdb or /var/tmp/from_scwrl_214276411_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_766915591.pdb -s /var/tmp/to_scwrl_766915591.seq -o /var/tmp/from_scwrl_766915591.pdb > /var/tmp/scwrl_766915591.log Error: can't open any of /var/tmp/from_scwrl_766915591.pdb or /var/tmp/from_scwrl_766915591_b.pdb or /var/tmp/from_scwrl_766915591_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_160161308.pdb -s /var/tmp/to_scwrl_160161308.seq -o /var/tmp/from_scwrl_160161308.pdb > /var/tmp/scwrl_160161308.log Error: can't open any of /var/tmp/from_scwrl_160161308.pdb or /var/tmp/from_scwrl_160161308_b.pdb or /var/tmp/from_scwrl_160161308_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1890586336.pdb -s /var/tmp/to_scwrl_1890586336.seq -o /var/tmp/from_scwrl_1890586336.pdb > /var/tmp/scwrl_1890586336.log Error: can't open any of /var/tmp/from_scwrl_1890586336.pdb or /var/tmp/from_scwrl_1890586336_b.pdb or /var/tmp/from_scwrl_1890586336_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2081034070.pdb -s /var/tmp/to_scwrl_2081034070.seq -o /var/tmp/from_scwrl_2081034070.pdb > /var/tmp/scwrl_2081034070.log Error: can't open any of /var/tmp/from_scwrl_2081034070.pdb or /var/tmp/from_scwrl_2081034070_b.pdb or /var/tmp/from_scwrl_2081034070_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_472465529.pdb -s /var/tmp/to_scwrl_472465529.seq -o /var/tmp/from_scwrl_472465529.pdb > /var/tmp/scwrl_472465529.log Error: can't open any of /var/tmp/from_scwrl_472465529.pdb or /var/tmp/from_scwrl_472465529_b.pdb or /var/tmp/from_scwrl_472465529_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_604496276.pdb -s /var/tmp/to_scwrl_604496276.seq -o /var/tmp/from_scwrl_604496276.pdb > /var/tmp/scwrl_604496276.log Error: can't open any of /var/tmp/from_scwrl_604496276.pdb or /var/tmp/from_scwrl_604496276_b.pdb or /var/tmp/from_scwrl_604496276_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1703742431.pdb -s /var/tmp/to_scwrl_1703742431.seq -o /var/tmp/from_scwrl_1703742431.pdb > /var/tmp/scwrl_1703742431.log Error: can't open any of /var/tmp/from_scwrl_1703742431.pdb or /var/tmp/from_scwrl_1703742431_b.pdb or /var/tmp/from_scwrl_1703742431_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_847042450.pdb -s /var/tmp/to_scwrl_847042450.seq -o /var/tmp/from_scwrl_847042450.pdb > /var/tmp/scwrl_847042450.log Error: can't open any of /var/tmp/from_scwrl_847042450.pdb or /var/tmp/from_scwrl_847042450_b.pdb or /var/tmp/from_scwrl_847042450_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_132740687.pdb -s /var/tmp/to_scwrl_132740687.seq -o /var/tmp/from_scwrl_132740687.pdb > /var/tmp/scwrl_132740687.log Error: can't open any of /var/tmp/from_scwrl_132740687.pdb or /var/tmp/from_scwrl_132740687_b.pdb or /var/tmp/from_scwrl_132740687_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 52 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_450500586.pdb -s /var/tmp/to_scwrl_450500586.seq -o /var/tmp/from_scwrl_450500586.pdb > /var/tmp/scwrl_450500586.log Error: can't open any of /var/tmp/from_scwrl_450500586.pdb or /var/tmp/from_scwrl_450500586_b.pdb or /var/tmp/from_scwrl_450500586_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_770737575.pdb -s /var/tmp/to_scwrl_770737575.seq -o /var/tmp/from_scwrl_770737575.pdb > /var/tmp/scwrl_770737575.log Error: can't open any of /var/tmp/from_scwrl_770737575.pdb or /var/tmp/from_scwrl_770737575_b.pdb or /var/tmp/from_scwrl_770737575_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_830568749.pdb -s /var/tmp/to_scwrl_830568749.seq -o /var/tmp/from_scwrl_830568749.pdb > /var/tmp/scwrl_830568749.log Error: can't open any of /var/tmp/from_scwrl_830568749.pdb or /var/tmp/from_scwrl_830568749_b.pdb or /var/tmp/from_scwrl_830568749_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_229453465.pdb -s /var/tmp/to_scwrl_229453465.seq -o /var/tmp/from_scwrl_229453465.pdb > /var/tmp/scwrl_229453465.log Error: can't open any of /var/tmp/from_scwrl_229453465.pdb or /var/tmp/from_scwrl_229453465_b.pdb or /var/tmp/from_scwrl_229453465_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1199077309.pdb -s /var/tmp/to_scwrl_1199077309.seq -o /var/tmp/from_scwrl_1199077309.pdb > /var/tmp/scwrl_1199077309.log Error: can't open any of /var/tmp/from_scwrl_1199077309.pdb or /var/tmp/from_scwrl_1199077309_b.pdb or /var/tmp/from_scwrl_1199077309_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_886325353.pdb -s /var/tmp/to_scwrl_886325353.seq -o /var/tmp/from_scwrl_886325353.pdb > /var/tmp/scwrl_886325353.log Error: can't open any of /var/tmp/from_scwrl_886325353.pdb or /var/tmp/from_scwrl_886325353_b.pdb or /var/tmp/from_scwrl_886325353_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_762280685.pdb -s /var/tmp/to_scwrl_762280685.seq -o /var/tmp/from_scwrl_762280685.pdb > /var/tmp/scwrl_762280685.log Error: can't open any of /var/tmp/from_scwrl_762280685.pdb or /var/tmp/from_scwrl_762280685_b.pdb or /var/tmp/from_scwrl_762280685_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_438924938.pdb -s /var/tmp/to_scwrl_438924938.seq -o /var/tmp/from_scwrl_438924938.pdb > /var/tmp/scwrl_438924938.log Error: can't open any of /var/tmp/from_scwrl_438924938.pdb or /var/tmp/from_scwrl_438924938_b.pdb or /var/tmp/from_scwrl_438924938_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1575486486.pdb -s /var/tmp/to_scwrl_1575486486.seq -o /var/tmp/from_scwrl_1575486486.pdb > /var/tmp/scwrl_1575486486.log Error: can't open any of /var/tmp/from_scwrl_1575486486.pdb or /var/tmp/from_scwrl_1575486486_b.pdb or /var/tmp/from_scwrl_1575486486_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1395141301.pdb -s /var/tmp/to_scwrl_1395141301.seq -o /var/tmp/from_scwrl_1395141301.pdb > /var/tmp/scwrl_1395141301.log Error: can't open any of /var/tmp/from_scwrl_1395141301.pdb or /var/tmp/from_scwrl_1395141301_b.pdb or /var/tmp/from_scwrl_1395141301_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_129249925.pdb -s /var/tmp/to_scwrl_129249925.seq -o /var/tmp/from_scwrl_129249925.pdb > /var/tmp/scwrl_129249925.log Error: can't open any of /var/tmp/from_scwrl_129249925.pdb or /var/tmp/from_scwrl_129249925_b.pdb or /var/tmp/from_scwrl_129249925_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1174608509.pdb -s /var/tmp/to_scwrl_1174608509.seq -o /var/tmp/from_scwrl_1174608509.pdb > /var/tmp/scwrl_1174608509.log Error: can't open any of /var/tmp/from_scwrl_1174608509.pdb or /var/tmp/from_scwrl_1174608509_b.pdb or /var/tmp/from_scwrl_1174608509_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_349209246.pdb -s /var/tmp/to_scwrl_349209246.seq -o /var/tmp/from_scwrl_349209246.pdb > /var/tmp/scwrl_349209246.log Error: can't open any of /var/tmp/from_scwrl_349209246.pdb or /var/tmp/from_scwrl_349209246_b.pdb or /var/tmp/from_scwrl_349209246_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1569549496.pdb -s /var/tmp/to_scwrl_1569549496.seq -o /var/tmp/from_scwrl_1569549496.pdb > /var/tmp/scwrl_1569549496.log Error: can't open any of /var/tmp/from_scwrl_1569549496.pdb or /var/tmp/from_scwrl_1569549496_b.pdb or /var/tmp/from_scwrl_1569549496_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 27 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2016086208.pdb -s /var/tmp/to_scwrl_2016086208.seq -o /var/tmp/from_scwrl_2016086208.pdb > /var/tmp/scwrl_2016086208.log Error: can't open any of /var/tmp/from_scwrl_2016086208.pdb or /var/tmp/from_scwrl_2016086208_b.pdb or /var/tmp/from_scwrl_2016086208_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1637970332.pdb -s /var/tmp/to_scwrl_1637970332.seq -o /var/tmp/from_scwrl_1637970332.pdb > /var/tmp/scwrl_1637970332.log Error: can't open any of /var/tmp/from_scwrl_1637970332.pdb or /var/tmp/from_scwrl_1637970332_b.pdb or /var/tmp/from_scwrl_1637970332_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 33 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_455055872.pdb -s /var/tmp/to_scwrl_455055872.seq -o /var/tmp/from_scwrl_455055872.pdb > /var/tmp/scwrl_455055872.log Error: can't open any of /var/tmp/from_scwrl_455055872.pdb or /var/tmp/from_scwrl_455055872_b.pdb or /var/tmp/from_scwrl_455055872_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2016866779.pdb -s /var/tmp/to_scwrl_2016866779.seq -o /var/tmp/from_scwrl_2016866779.pdb > /var/tmp/scwrl_2016866779.log Error: can't open any of /var/tmp/from_scwrl_2016866779.pdb or /var/tmp/from_scwrl_2016866779_b.pdb or /var/tmp/from_scwrl_2016866779_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1636622211.pdb -s /var/tmp/to_scwrl_1636622211.seq -o /var/tmp/from_scwrl_1636622211.pdb > /var/tmp/scwrl_1636622211.log Error: can't open any of /var/tmp/from_scwrl_1636622211.pdb or /var/tmp/from_scwrl_1636622211_b.pdb or /var/tmp/from_scwrl_1636622211_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1902060474.pdb -s /var/tmp/to_scwrl_1902060474.seq -o /var/tmp/from_scwrl_1902060474.pdb > /var/tmp/scwrl_1902060474.log Error: can't open any of /var/tmp/from_scwrl_1902060474.pdb or /var/tmp/from_scwrl_1902060474_b.pdb or /var/tmp/from_scwrl_1902060474_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1719209649.pdb -s /var/tmp/to_scwrl_1719209649.seq -o /var/tmp/from_scwrl_1719209649.pdb > /var/tmp/scwrl_1719209649.log Error: can't open any of /var/tmp/from_scwrl_1719209649.pdb or /var/tmp/from_scwrl_1719209649_b.pdb or /var/tmp/from_scwrl_1719209649_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1850898622.pdb -s /var/tmp/to_scwrl_1850898622.seq -o /var/tmp/from_scwrl_1850898622.pdb > /var/tmp/scwrl_1850898622.log Error: can't open any of /var/tmp/from_scwrl_1850898622.pdb or /var/tmp/from_scwrl_1850898622_b.pdb or /var/tmp/from_scwrl_1850898622_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_521492419.pdb -s /var/tmp/to_scwrl_521492419.seq -o /var/tmp/from_scwrl_521492419.pdb > /var/tmp/scwrl_521492419.log Error: can't open any of /var/tmp/from_scwrl_521492419.pdb or /var/tmp/from_scwrl_521492419_b.pdb or /var/tmp/from_scwrl_521492419_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1879370957.pdb -s /var/tmp/to_scwrl_1879370957.seq -o /var/tmp/from_scwrl_1879370957.pdb > /var/tmp/scwrl_1879370957.log Error: can't open any of /var/tmp/from_scwrl_1879370957.pdb or /var/tmp/from_scwrl_1879370957_b.pdb or /var/tmp/from_scwrl_1879370957_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1594001311.pdb -s /var/tmp/to_scwrl_1594001311.seq -o /var/tmp/from_scwrl_1594001311.pdb > /var/tmp/scwrl_1594001311.log Error: can't open any of /var/tmp/from_scwrl_1594001311.pdb or /var/tmp/from_scwrl_1594001311_b.pdb or /var/tmp/from_scwrl_1594001311_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_455042842.pdb -s /var/tmp/to_scwrl_455042842.seq -o /var/tmp/from_scwrl_455042842.pdb > /var/tmp/scwrl_455042842.log Error: can't open any of /var/tmp/from_scwrl_455042842.pdb or /var/tmp/from_scwrl_455042842_b.pdb or /var/tmp/from_scwrl_455042842_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_204352839.pdb -s /var/tmp/to_scwrl_204352839.seq -o /var/tmp/from_scwrl_204352839.pdb > /var/tmp/scwrl_204352839.log Error: can't open any of /var/tmp/from_scwrl_204352839.pdb or /var/tmp/from_scwrl_204352839_b.pdb or /var/tmp/from_scwrl_204352839_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_51013940.pdb -s /var/tmp/to_scwrl_51013940.seq -o /var/tmp/from_scwrl_51013940.pdb > /var/tmp/scwrl_51013940.log Error: can't open any of /var/tmp/from_scwrl_51013940.pdb or /var/tmp/from_scwrl_51013940_b.pdb or /var/tmp/from_scwrl_51013940_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_11301626.pdb -s /var/tmp/to_scwrl_11301626.seq -o /var/tmp/from_scwrl_11301626.pdb > /var/tmp/scwrl_11301626.log Error: can't open any of /var/tmp/from_scwrl_11301626.pdb or /var/tmp/from_scwrl_11301626_b.pdb or /var/tmp/from_scwrl_11301626_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1051395289.pdb -s /var/tmp/to_scwrl_1051395289.seq -o /var/tmp/from_scwrl_1051395289.pdb > /var/tmp/scwrl_1051395289.log Error: can't open any of /var/tmp/from_scwrl_1051395289.pdb or /var/tmp/from_scwrl_1051395289_b.pdb or /var/tmp/from_scwrl_1051395289_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_183754628.pdb -s /var/tmp/to_scwrl_183754628.seq -o /var/tmp/from_scwrl_183754628.pdb > /var/tmp/scwrl_183754628.log Error: can't open any of /var/tmp/from_scwrl_183754628.pdb or /var/tmp/from_scwrl_183754628_b.pdb or /var/tmp/from_scwrl_183754628_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_461802212.pdb -s /var/tmp/to_scwrl_461802212.seq -o /var/tmp/from_scwrl_461802212.pdb > /var/tmp/scwrl_461802212.log Error: can't open any of /var/tmp/from_scwrl_461802212.pdb or /var/tmp/from_scwrl_461802212_b.pdb or /var/tmp/from_scwrl_461802212_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1822132864.pdb -s /var/tmp/to_scwrl_1822132864.seq -o /var/tmp/from_scwrl_1822132864.pdb > /var/tmp/scwrl_1822132864.log Error: can't open any of /var/tmp/from_scwrl_1822132864.pdb or /var/tmp/from_scwrl_1822132864_b.pdb or /var/tmp/from_scwrl_1822132864_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1014323377.pdb -s /var/tmp/to_scwrl_1014323377.seq -o /var/tmp/from_scwrl_1014323377.pdb > /var/tmp/scwrl_1014323377.log Error: can't open any of /var/tmp/from_scwrl_1014323377.pdb or /var/tmp/from_scwrl_1014323377_b.pdb or /var/tmp/from_scwrl_1014323377_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_691255677.pdb -s /var/tmp/to_scwrl_691255677.seq -o /var/tmp/from_scwrl_691255677.pdb > /var/tmp/scwrl_691255677.log Error: can't open any of /var/tmp/from_scwrl_691255677.pdb or /var/tmp/from_scwrl_691255677_b.pdb or /var/tmp/from_scwrl_691255677_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_873726527.pdb -s /var/tmp/to_scwrl_873726527.seq -o /var/tmp/from_scwrl_873726527.pdb > /var/tmp/scwrl_873726527.log Error: can't open any of /var/tmp/from_scwrl_873726527.pdb or /var/tmp/from_scwrl_873726527_b.pdb or /var/tmp/from_scwrl_873726527_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 16 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1900648729.pdb -s /var/tmp/to_scwrl_1900648729.seq -o /var/tmp/from_scwrl_1900648729.pdb > /var/tmp/scwrl_1900648729.log Error: can't open any of /var/tmp/from_scwrl_1900648729.pdb or /var/tmp/from_scwrl_1900648729_b.pdb or /var/tmp/from_scwrl_1900648729_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1453536361.pdb -s /var/tmp/to_scwrl_1453536361.seq -o /var/tmp/from_scwrl_1453536361.pdb > /var/tmp/scwrl_1453536361.log Error: can't open any of /var/tmp/from_scwrl_1453536361.pdb or /var/tmp/from_scwrl_1453536361_b.pdb or /var/tmp/from_scwrl_1453536361_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1312651464.pdb -s /var/tmp/to_scwrl_1312651464.seq -o /var/tmp/from_scwrl_1312651464.pdb > /var/tmp/scwrl_1312651464.log Error: can't open any of /var/tmp/from_scwrl_1312651464.pdb or /var/tmp/from_scwrl_1312651464_b.pdb or /var/tmp/from_scwrl_1312651464_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1328651568.pdb -s /var/tmp/to_scwrl_1328651568.seq -o /var/tmp/from_scwrl_1328651568.pdb > /var/tmp/scwrl_1328651568.log Error: can't open any of /var/tmp/from_scwrl_1328651568.pdb or /var/tmp/from_scwrl_1328651568_b.pdb or /var/tmp/from_scwrl_1328651568_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_701194016.pdb -s /var/tmp/to_scwrl_701194016.seq -o /var/tmp/from_scwrl_701194016.pdb > /var/tmp/scwrl_701194016.log Error: can't open any of /var/tmp/from_scwrl_701194016.pdb or /var/tmp/from_scwrl_701194016_b.pdb or /var/tmp/from_scwrl_701194016_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1441901389.pdb -s /var/tmp/to_scwrl_1441901389.seq -o /var/tmp/from_scwrl_1441901389.pdb > /var/tmp/scwrl_1441901389.log Error: can't open any of /var/tmp/from_scwrl_1441901389.pdb or /var/tmp/from_scwrl_1441901389_b.pdb or /var/tmp/from_scwrl_1441901389_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_355776431.pdb -s /var/tmp/to_scwrl_355776431.seq -o /var/tmp/from_scwrl_355776431.pdb > /var/tmp/scwrl_355776431.log Error: can't open any of /var/tmp/from_scwrl_355776431.pdb or /var/tmp/from_scwrl_355776431_b.pdb or /var/tmp/from_scwrl_355776431_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1050403262.pdb -s /var/tmp/to_scwrl_1050403262.seq -o /var/tmp/from_scwrl_1050403262.pdb > /var/tmp/scwrl_1050403262.log Error: can't open any of /var/tmp/from_scwrl_1050403262.pdb or /var/tmp/from_scwrl_1050403262_b.pdb or /var/tmp/from_scwrl_1050403262_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_863967240.pdb -s /var/tmp/to_scwrl_863967240.seq -o /var/tmp/from_scwrl_863967240.pdb > /var/tmp/scwrl_863967240.log Error: can't open any of /var/tmp/from_scwrl_863967240.pdb or /var/tmp/from_scwrl_863967240_b.pdb or /var/tmp/from_scwrl_863967240_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_224378992.pdb -s /var/tmp/to_scwrl_224378992.seq -o /var/tmp/from_scwrl_224378992.pdb > /var/tmp/scwrl_224378992.log Error: can't open any of /var/tmp/from_scwrl_224378992.pdb or /var/tmp/from_scwrl_224378992_b.pdb or /var/tmp/from_scwrl_224378992_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_540889948.pdb -s /var/tmp/to_scwrl_540889948.seq -o /var/tmp/from_scwrl_540889948.pdb > /var/tmp/scwrl_540889948.log Error: can't open any of /var/tmp/from_scwrl_540889948.pdb or /var/tmp/from_scwrl_540889948_b.pdb or /var/tmp/from_scwrl_540889948_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1319023111.pdb -s /var/tmp/to_scwrl_1319023111.seq -o /var/tmp/from_scwrl_1319023111.pdb > /var/tmp/scwrl_1319023111.log Error: can't open any of /var/tmp/from_scwrl_1319023111.pdb or /var/tmp/from_scwrl_1319023111_b.pdb or /var/tmp/from_scwrl_1319023111_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_93762124.pdb -s /var/tmp/to_scwrl_93762124.seq -o /var/tmp/from_scwrl_93762124.pdb > /var/tmp/scwrl_93762124.log Error: can't open any of /var/tmp/from_scwrl_93762124.pdb or /var/tmp/from_scwrl_93762124_b.pdb or /var/tmp/from_scwrl_93762124_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_30028512.pdb -s /var/tmp/to_scwrl_30028512.seq -o /var/tmp/from_scwrl_30028512.pdb > /var/tmp/scwrl_30028512.log Error: can't open any of /var/tmp/from_scwrl_30028512.pdb or /var/tmp/from_scwrl_30028512_b.pdb or /var/tmp/from_scwrl_30028512_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1073599939.pdb -s /var/tmp/to_scwrl_1073599939.seq -o /var/tmp/from_scwrl_1073599939.pdb > /var/tmp/scwrl_1073599939.log Error: can't open any of /var/tmp/from_scwrl_1073599939.pdb or /var/tmp/from_scwrl_1073599939_b.pdb or /var/tmp/from_scwrl_1073599939_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1812971773.pdb -s /var/tmp/to_scwrl_1812971773.seq -o /var/tmp/from_scwrl_1812971773.pdb > /var/tmp/scwrl_1812971773.log Error: can't open any of /var/tmp/from_scwrl_1812971773.pdb or /var/tmp/from_scwrl_1812971773_b.pdb or /var/tmp/from_scwrl_1812971773_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1880927135.pdb -s /var/tmp/to_scwrl_1880927135.seq -o /var/tmp/from_scwrl_1880927135.pdb > /var/tmp/scwrl_1880927135.log Error: can't open any of /var/tmp/from_scwrl_1880927135.pdb or /var/tmp/from_scwrl_1880927135_b.pdb or /var/tmp/from_scwrl_1880927135_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1595092357.pdb -s /var/tmp/to_scwrl_1595092357.seq -o /var/tmp/from_scwrl_1595092357.pdb > /var/tmp/scwrl_1595092357.log Error: can't open any of /var/tmp/from_scwrl_1595092357.pdb or /var/tmp/from_scwrl_1595092357_b.pdb or /var/tmp/from_scwrl_1595092357_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1544859084.pdb -s /var/tmp/to_scwrl_1544859084.seq -o /var/tmp/from_scwrl_1544859084.pdb > /var/tmp/scwrl_1544859084.log Error: can't open any of /var/tmp/from_scwrl_1544859084.pdb or /var/tmp/from_scwrl_1544859084_b.pdb or /var/tmp/from_scwrl_1544859084_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1327444799.pdb -s /var/tmp/to_scwrl_1327444799.seq -o /var/tmp/from_scwrl_1327444799.pdb > /var/tmp/scwrl_1327444799.log Error: can't open any of /var/tmp/from_scwrl_1327444799.pdb or /var/tmp/from_scwrl_1327444799_b.pdb or /var/tmp/from_scwrl_1327444799_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2050135199.pdb -s /var/tmp/to_scwrl_2050135199.seq -o /var/tmp/from_scwrl_2050135199.pdb > /var/tmp/scwrl_2050135199.log Error: can't open any of /var/tmp/from_scwrl_2050135199.pdb or /var/tmp/from_scwrl_2050135199_b.pdb or /var/tmp/from_scwrl_2050135199_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1749211923.pdb -s /var/tmp/to_scwrl_1749211923.seq -o /var/tmp/from_scwrl_1749211923.pdb > /var/tmp/scwrl_1749211923.log Error: can't open any of /var/tmp/from_scwrl_1749211923.pdb or /var/tmp/from_scwrl_1749211923_b.pdb or /var/tmp/from_scwrl_1749211923_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1378458740.pdb -s /var/tmp/to_scwrl_1378458740.seq -o /var/tmp/from_scwrl_1378458740.pdb > /var/tmp/scwrl_1378458740.log Error: can't open any of /var/tmp/from_scwrl_1378458740.pdb or /var/tmp/from_scwrl_1378458740_b.pdb or /var/tmp/from_scwrl_1378458740_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2061436825.pdb -s /var/tmp/to_scwrl_2061436825.seq -o /var/tmp/from_scwrl_2061436825.pdb > /var/tmp/scwrl_2061436825.log Error: can't open any of /var/tmp/from_scwrl_2061436825.pdb or /var/tmp/from_scwrl_2061436825_b.pdb or /var/tmp/from_scwrl_2061436825_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_653123566.pdb -s /var/tmp/to_scwrl_653123566.seq -o /var/tmp/from_scwrl_653123566.pdb > /var/tmp/scwrl_653123566.log Error: can't open any of /var/tmp/from_scwrl_653123566.pdb or /var/tmp/from_scwrl_653123566_b.pdb or /var/tmp/from_scwrl_653123566_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1562213368.pdb -s /var/tmp/to_scwrl_1562213368.seq -o /var/tmp/from_scwrl_1562213368.pdb > /var/tmp/scwrl_1562213368.log Error: can't open any of /var/tmp/from_scwrl_1562213368.pdb or /var/tmp/from_scwrl_1562213368_b.pdb or /var/tmp/from_scwrl_1562213368_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_375755390.pdb -s /var/tmp/to_scwrl_375755390.seq -o /var/tmp/from_scwrl_375755390.pdb > /var/tmp/scwrl_375755390.log Error: can't open any of /var/tmp/from_scwrl_375755390.pdb or /var/tmp/from_scwrl_375755390_b.pdb or /var/tmp/from_scwrl_375755390_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_327772783.pdb -s /var/tmp/to_scwrl_327772783.seq -o /var/tmp/from_scwrl_327772783.pdb > /var/tmp/scwrl_327772783.log Error: can't open any of /var/tmp/from_scwrl_327772783.pdb or /var/tmp/from_scwrl_327772783_b.pdb or /var/tmp/from_scwrl_327772783_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_429053098.pdb -s /var/tmp/to_scwrl_429053098.seq -o /var/tmp/from_scwrl_429053098.pdb > /var/tmp/scwrl_429053098.log Error: can't open any of /var/tmp/from_scwrl_429053098.pdb or /var/tmp/from_scwrl_429053098_b.pdb or /var/tmp/from_scwrl_429053098_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1067011067.pdb -s /var/tmp/to_scwrl_1067011067.seq -o /var/tmp/from_scwrl_1067011067.pdb > /var/tmp/scwrl_1067011067.log Error: can't open any of /var/tmp/from_scwrl_1067011067.pdb or /var/tmp/from_scwrl_1067011067_b.pdb or /var/tmp/from_scwrl_1067011067_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1201499309.pdb -s /var/tmp/to_scwrl_1201499309.seq -o /var/tmp/from_scwrl_1201499309.pdb > /var/tmp/scwrl_1201499309.log Error: can't open any of /var/tmp/from_scwrl_1201499309.pdb or /var/tmp/from_scwrl_1201499309_b.pdb or /var/tmp/from_scwrl_1201499309_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_182218180.pdb -s /var/tmp/to_scwrl_182218180.seq -o /var/tmp/from_scwrl_182218180.pdb > /var/tmp/scwrl_182218180.log Error: can't open any of /var/tmp/from_scwrl_182218180.pdb or /var/tmp/from_scwrl_182218180_b.pdb or /var/tmp/from_scwrl_182218180_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_373063781.pdb -s /var/tmp/to_scwrl_373063781.seq -o /var/tmp/from_scwrl_373063781.pdb > /var/tmp/scwrl_373063781.log Error: can't open any of /var/tmp/from_scwrl_373063781.pdb or /var/tmp/from_scwrl_373063781_b.pdb or /var/tmp/from_scwrl_373063781_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_366667128.pdb -s /var/tmp/to_scwrl_366667128.seq -o /var/tmp/from_scwrl_366667128.pdb > /var/tmp/scwrl_366667128.log Error: can't open any of /var/tmp/from_scwrl_366667128.pdb or /var/tmp/from_scwrl_366667128_b.pdb or /var/tmp/from_scwrl_366667128_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1510869748.pdb -s /var/tmp/to_scwrl_1510869748.seq -o /var/tmp/from_scwrl_1510869748.pdb > /var/tmp/scwrl_1510869748.log Error: can't open any of /var/tmp/from_scwrl_1510869748.pdb or /var/tmp/from_scwrl_1510869748_b.pdb or /var/tmp/from_scwrl_1510869748_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1074257796.pdb -s /var/tmp/to_scwrl_1074257796.seq -o /var/tmp/from_scwrl_1074257796.pdb > /var/tmp/scwrl_1074257796.log Error: can't open any of /var/tmp/from_scwrl_1074257796.pdb or /var/tmp/from_scwrl_1074257796_b.pdb or /var/tmp/from_scwrl_1074257796_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1808568517.pdb -s /var/tmp/to_scwrl_1808568517.seq -o /var/tmp/from_scwrl_1808568517.pdb > /var/tmp/scwrl_1808568517.log Error: can't open any of /var/tmp/from_scwrl_1808568517.pdb or /var/tmp/from_scwrl_1808568517_b.pdb or /var/tmp/from_scwrl_1808568517_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1866646179.pdb -s /var/tmp/to_scwrl_1866646179.seq -o /var/tmp/from_scwrl_1866646179.pdb > /var/tmp/scwrl_1866646179.log Error: can't open any of /var/tmp/from_scwrl_1866646179.pdb or /var/tmp/from_scwrl_1866646179_b.pdb or /var/tmp/from_scwrl_1866646179_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2124661059.pdb -s /var/tmp/to_scwrl_2124661059.seq -o /var/tmp/from_scwrl_2124661059.pdb > /var/tmp/scwrl_2124661059.log Error: can't open any of /var/tmp/from_scwrl_2124661059.pdb or /var/tmp/from_scwrl_2124661059_b.pdb or /var/tmp/from_scwrl_2124661059_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_525052110.pdb -s /var/tmp/to_scwrl_525052110.seq -o /var/tmp/from_scwrl_525052110.pdb > /var/tmp/scwrl_525052110.log Error: can't open any of /var/tmp/from_scwrl_525052110.pdb or /var/tmp/from_scwrl_525052110_b.pdb or /var/tmp/from_scwrl_525052110_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_2091025171.pdb -s /var/tmp/to_scwrl_2091025171.seq -o /var/tmp/from_scwrl_2091025171.pdb > /var/tmp/scwrl_2091025171.log Error: can't open any of /var/tmp/from_scwrl_2091025171.pdb or /var/tmp/from_scwrl_2091025171_b.pdb or /var/tmp/from_scwrl_2091025171_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_518067360.pdb -s /var/tmp/to_scwrl_518067360.seq -o /var/tmp/from_scwrl_518067360.pdb > /var/tmp/scwrl_518067360.log Error: can't open any of /var/tmp/from_scwrl_518067360.pdb or /var/tmp/from_scwrl_518067360_b.pdb or /var/tmp/from_scwrl_518067360_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1844075221.pdb -s /var/tmp/to_scwrl_1844075221.seq -o /var/tmp/from_scwrl_1844075221.pdb > /var/tmp/scwrl_1844075221.log Error: can't open any of /var/tmp/from_scwrl_1844075221.pdb or /var/tmp/from_scwrl_1844075221_b.pdb or /var/tmp/from_scwrl_1844075221_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_37303648.pdb -s /var/tmp/to_scwrl_37303648.seq -o /var/tmp/from_scwrl_37303648.pdb > /var/tmp/scwrl_37303648.log Error: can't open any of /var/tmp/from_scwrl_37303648.pdb or /var/tmp/from_scwrl_37303648_b.pdb or /var/tmp/from_scwrl_37303648_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 37 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_548095872.pdb -s /var/tmp/to_scwrl_548095872.seq -o /var/tmp/from_scwrl_548095872.pdb > /var/tmp/scwrl_548095872.log Error: can't open any of /var/tmp/from_scwrl_548095872.pdb or /var/tmp/from_scwrl_548095872_b.pdb or /var/tmp/from_scwrl_548095872_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_770191514.pdb -s /var/tmp/to_scwrl_770191514.seq -o /var/tmp/from_scwrl_770191514.pdb > /var/tmp/scwrl_770191514.log Error: can't open any of /var/tmp/from_scwrl_770191514.pdb or /var/tmp/from_scwrl_770191514_b.pdb or /var/tmp/from_scwrl_770191514_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1850275422.pdb -s /var/tmp/to_scwrl_1850275422.seq -o /var/tmp/from_scwrl_1850275422.pdb > /var/tmp/scwrl_1850275422.log Error: can't open any of /var/tmp/from_scwrl_1850275422.pdb or /var/tmp/from_scwrl_1850275422_b.pdb or /var/tmp/from_scwrl_1850275422_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_281539360.pdb -s /var/tmp/to_scwrl_281539360.seq -o /var/tmp/from_scwrl_281539360.pdb > /var/tmp/scwrl_281539360.log Error: can't open any of /var/tmp/from_scwrl_281539360.pdb or /var/tmp/from_scwrl_281539360_b.pdb or /var/tmp/from_scwrl_281539360_a.pdb Error: no new SCWRL conformation added # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_217800224.pdb -s /var/tmp/to_scwrl_217800224.seq -o /var/tmp/from_scwrl_217800224.pdb > /var/tmp/scwrl_217800224.log Error: can't open any of /var/tmp/from_scwrl_217800224.pdb or /var/tmp/from_scwrl_217800224_b.pdb or /var/tmp/from_scwrl_217800224_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1247650859.pdb -s /var/tmp/to_scwrl_1247650859.seq -o /var/tmp/from_scwrl_1247650859.pdb > /var/tmp/scwrl_1247650859.log Error: can't open any of /var/tmp/from_scwrl_1247650859.pdb or /var/tmp/from_scwrl_1247650859_b.pdb or /var/tmp/from_scwrl_1247650859_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_1608984160.pdb -s /var/tmp/to_scwrl_1608984160.seq -o /var/tmp/from_scwrl_1608984160.pdb > /var/tmp/scwrl_1608984160.log Error: can't open any of /var/tmp/from_scwrl_1608984160.pdb or /var/tmp/from_scwrl_1608984160_b.pdb or /var/tmp/from_scwrl_1608984160_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_120451777.pdb -s /var/tmp/to_scwrl_120451777.seq -o /var/tmp/from_scwrl_120451777.pdb > /var/tmp/scwrl_120451777.log Error: can't open any of /var/tmp/from_scwrl_120451777.pdb or /var/tmp/from_scwrl_120451777_b.pdb or /var/tmp/from_scwrl_120451777_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_849379136.pdb -s /var/tmp/to_scwrl_849379136.seq -o /var/tmp/from_scwrl_849379136.pdb > /var/tmp/scwrl_849379136.log Error: can't open any of /var/tmp/from_scwrl_849379136.pdb or /var/tmp/from_scwrl_849379136_b.pdb or /var/tmp/from_scwrl_849379136_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_839959254.pdb -s /var/tmp/to_scwrl_839959254.seq -o /var/tmp/from_scwrl_839959254.pdb > /var/tmp/scwrl_839959254.log Error: can't open any of /var/tmp/from_scwrl_839959254.pdb or /var/tmp/from_scwrl_839959254_b.pdb or /var/tmp/from_scwrl_839959254_a.pdb Error: no new SCWRL conformation added # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 94 ; scwrl -i /var/tmp/to_scwrl_34404955.pdb -s /var/tmp/to_scwrl_34404955.seq -o /var/tmp/from_scwrl_34404955.pdb > /var/tmp/scwrl_34404955.log Error: can't open any of /var/tmp/from_scwrl_34404955.pdb or /var/tmp/from_scwrl_34404955_b.pdb or /var/tmp/from_scwrl_34404955_a.pdb Error: no new SCWRL conformation added # naming current conformation shub_TS1-scwrl # command:CPU_time= 26.076 sec, elapsed time= 33.351 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.predburial.rdb # command:# CostConform shub_TS1-scwrl costs 396.55 real_cost = 368.787 panther2_TS1-scwrl costs 888.282 real_cost = 400.089 nFOLD_TS5-scwrl costs 7210.72 real_cost = 392.181 nFOLD_TS4-scwrl costs 8260.8 real_cost = 389.213 nFOLD_TS3-scwrl costs 5473.92 real_cost = 405.602 nFOLD_TS2-scwrl costs 3968.89 real_cost = 356.315 nFOLD_TS1-scwrl costs 5746.59 real_cost = 390.287 mGen-3D_TS1-scwrl costs 11644 real_cost = 375.237 keasar-server_TS5-scwrl costs 323.559 real_cost = 302.694 keasar-server_TS4-scwrl costs 329.719 real_cost = 330.296 keasar-server_TS3-scwrl costs 333.767 real_cost = 330.885 keasar-server_TS1-scwrl costs 333.704 real_cost = 319.356 karypis.srv_TS5-scwrl costs 336.243 real_cost = 323.464 karypis.srv_TS4-scwrl costs 458.589 real_cost = 340.805 karypis.srv_TS3-scwrl costs 297.748 real_cost = 299.648 karypis.srv_TS2-scwrl costs 506.784 real_cost = 351.828 karypis.srv_TS1-scwrl costs 357.629 real_cost = 344.005 karypis.srv.2_TS5-scwrl costs 336.333 real_cost = 291.289 karypis.srv.2_TS4-scwrl costs 330.508 real_cost = 347.789 karypis.srv.2_TS3-scwrl costs 371.662 real_cost = 365.482 karypis.srv.2_TS2-scwrl costs 365.331 real_cost = 318.207 karypis.srv.2_TS1-scwrl costs 337.203 real_cost = 327.208 forecast-s_AL5-scwrl costs 13207.1 real_cost = 439.55 forecast-s_AL4-scwrl costs 27879.6 real_cost = 490.004 forecast-s_AL3-scwrl costs 6949.49 real_cost = 423.762 forecast-s_AL2-scwrl costs 36969.9 real_cost = 489.105 forecast-s_AL1-scwrl costs 11174.8 real_cost = 476.712 beautshotbase_TS1-scwrl costs 382.199 real_cost = 359.813 beautshot_TS1-scwrl costs 380.878 real_cost = 347.432 Zhang-Server_TS5-scwrl costs 435.265 real_cost = 301.583 Zhang-Server_TS4-scwrl costs 430.993 real_cost = 311.042 Zhang-Server_TS3-scwrl costs 388.791 real_cost = 303.513 Zhang-Server_TS2-scwrl costs 390.318 real_cost = 305.06 Zhang-Server_TS1-scwrl costs 397.519 real_cost = 310.649 UNI-EID_sfst_AL5-scwrl costs 31572.5 real_cost = 460.048 UNI-EID_sfst_AL4-scwrl costs 121328 real_cost = 455.107 UNI-EID_sfst_AL3-scwrl costs 80677.2 real_cost = 436.787 UNI-EID_sfst_AL2-scwrl costs 13417 real_cost = 479.516 UNI-EID_sfst_AL1-scwrl costs 13086.7 real_cost = 447.758 UNI-EID_expm_TS1-scwrl costs 4094.36 real_cost = 407.524 UNI-EID_bnmx_TS5-scwrl costs 39372.9 real_cost = 395.279 UNI-EID_bnmx_TS4-scwrl costs 126130 real_cost = 449.652 UNI-EID_bnmx_TS3-scwrl costs 68227.6 real_cost = 444.638 UNI-EID_bnmx_TS2-scwrl costs 13545.8 real_cost = 478.428 UNI-EID_bnmx_TS1-scwrl costs 15366.2 real_cost = 421.199 SPARKS2_TS5-scwrl costs 332.355 real_cost = 328.464 SPARKS2_TS4-scwrl costs 335.235 real_cost = 286.575 SPARKS2_TS3-scwrl costs 368.039 real_cost = 360.408 SPARKS2_TS2-scwrl costs 338.358 real_cost = 325.308 SPARKS2_TS1-scwrl costs 353.993 real_cost = 342.933 SP4_TS5-scwrl costs 312.433 real_cost = 346.141 SP4_TS4-scwrl costs 330.833 real_cost = 349.869 SP4_TS3-scwrl costs 330.12 real_cost = 331.122 SP4_TS2-scwrl costs 342.506 real_cost = 339.065 SP4_TS1-scwrl costs 309.099 real_cost = 338.591 SP3_TS5-scwrl costs 337.326 real_cost = 339.02 SP3_TS4-scwrl costs 313.273 real_cost = 362.238 SP3_TS3-scwrl costs 301.631 real_cost = 341.733 SP3_TS2-scwrl costs 359.662 real_cost = 328.373 SP3_TS1-scwrl costs 303.872 real_cost = 342.63 SAM_T06_server_TS5-scwrl costs 550.547 real_cost = 374.621 SAM_T06_server_TS4-scwrl costs 483.291 real_cost = 365.08 SAM_T06_server_TS3-scwrl costs 518.303 real_cost = 402.297 SAM_T06_server_TS2-scwrl costs 509.459 real_cost = 363.533 SAM_T06_server_TS1-scwrl costs 257.223 real_cost = 316.686 SAM-T02_AL3-scwrl costs 3237.36 real_cost = 476.535 SAM-T02_AL2-scwrl costs 7195.74 real_cost = 484.013 SAM-T02_AL1-scwrl costs 11335.5 real_cost = 452.887 ROKKY_TS5-scwrl costs 6059.7 real_cost = 354.41 ROKKY_TS4-scwrl costs 5919.35 real_cost = 401.728 ROKKY_TS3-scwrl costs 7549.24 real_cost = 385.146 ROKKY_TS2-scwrl costs 5663.87 real_cost = 388.88 ROKKY_TS1-scwrl costs 6820.49 real_cost = 370.874 ROBETTA_TS5-scwrl costs 297.824 real_cost = 326.885 ROBETTA_TS4-scwrl costs 277.622 real_cost = 328.133 ROBETTA_TS3-scwrl costs 317.922 real_cost = 314.855 ROBETTA_TS2-scwrl costs 268.692 real_cost = 322.821 ROBETTA_TS1-scwrl costs 306.251 real_cost = 319.446 RAPTOR_TS5-scwrl costs 360.84 real_cost = 332.556 RAPTOR_TS4-scwrl costs 356.429 real_cost = 367.196 RAPTOR_TS3-scwrl costs 342.491 real_cost = 355.041 RAPTOR_TS2-scwrl costs 347.707 real_cost = 313.842 RAPTOR_TS1-scwrl costs 318.304 real_cost = 336.833 RAPTORESS_TS5-scwrl costs 333.077 real_cost = 324.143 RAPTORESS_TS4-scwrl costs 351.081 real_cost = 366.783 RAPTORESS_TS3-scwrl costs 329.984 real_cost = 326.314 RAPTORESS_TS2-scwrl costs 320.187 real_cost = 305.038 RAPTORESS_TS1-scwrl costs 316.039 real_cost = 313.332 RAPTOR-ACE_TS5-scwrl costs 326.219 real_cost = 323.834 RAPTOR-ACE_TS4-scwrl costs 339.706 real_cost = 307.184 RAPTOR-ACE_TS3-scwrl costs 362.505 real_cost = 323.073 RAPTOR-ACE_TS2-scwrl costs 329.411 real_cost = 296.779 RAPTOR-ACE_TS1-scwrl costs 321.644 real_cost = 327.894 Pmodeller6_TS5-scwrl costs 297.824 real_cost = 326.885 Pmodeller6_TS4-scwrl costs 306.251 real_cost = 319.446 Pmodeller6_TS3-scwrl costs 407.333 real_cost = 338.116 Pmodeller6_TS2-scwrl costs 291.649 real_cost = 325.958 Pmodeller6_TS1-scwrl costs 299.447 real_cost = 304.72 Phyre-2_TS5-scwrl costs 428.145 real_cost = 301.921 Phyre-2_TS4-scwrl costs 408.289 real_cost = 332.716 Phyre-2_TS3-scwrl costs 422.242 real_cost = 371.882 Phyre-2_TS2-scwrl costs 471.385 real_cost = 343.718 Phyre-2_TS1-scwrl costs 376.888 real_cost = 375.417 Phyre-1_TS1-scwrl costs 923.257 real_cost = 440.035 Pcons6_TS5-scwrl costs 317.922 real_cost = 314.855 Pcons6_TS4-scwrl costs 460.122 real_cost = 333.433 Pcons6_TS3-scwrl costs 531.087 real_cost = 327.721 Pcons6_TS2-scwrl costs 407.333 real_cost = 338.116 Pcons6_TS1-scwrl costs 419.628 real_cost = 330.507 PROTINFO_TS5-scwrl costs 302.057 real_cost = 318.096 PROTINFO_TS4-scwrl costs 305.554 real_cost = 276.195 PROTINFO_TS3-scwrl costs 303.436 real_cost = 318.768 PROTINFO_TS2-scwrl costs 327.272 real_cost = 316.725 PROTINFO_TS1-scwrl costs 302.851 real_cost = 320.806 PROTINFO-AB_TS5-scwrl costs 315.946 real_cost = 314.389 PROTINFO-AB_TS4-scwrl costs 303.436 real_cost = 318.768 PROTINFO-AB_TS3-scwrl costs 314.973 real_cost = 304.547 PROTINFO-AB_TS2-scwrl costs 304.799 real_cost = 316.035 PROTINFO-AB_TS1-scwrl costs 316.303 real_cost = 320.803 POMYSL_TS5-scwrl costs 450.465 real_cost = 321.696 POMYSL_TS4-scwrl costs 407.469 real_cost = 336.062 POMYSL_TS3-scwrl costs 472.844 real_cost = 354.788 POMYSL_TS2-scwrl costs 396.663 real_cost = 366.807 POMYSL_TS1-scwrl costs 523.118 real_cost = 351.273 NN_PUT_lab_TS1-scwrl costs 353.993 real_cost = 342.933 MetaTasser_TS5-scwrl costs 497.628 real_cost = 320.59 MetaTasser_TS4-scwrl costs 443.649 real_cost = 334.242 MetaTasser_TS3-scwrl costs 445.343 real_cost = 335.298 MetaTasser_TS2-scwrl costs 476.072 real_cost = 336.204 MetaTasser_TS1-scwrl costs 449.904 real_cost = 323.867 Ma-OPUS-server_TS5-scwrl costs 336.091 real_cost = 347.669 Ma-OPUS-server_TS4-scwrl costs 323.514 real_cost = 324.848 Ma-OPUS-server_TS3-scwrl costs 317.368 real_cost = 296.186 Ma-OPUS-server_TS2-scwrl costs 336.159 real_cost = 320.98 Ma-OPUS-server_TS1-scwrl costs 307.528 real_cost = 330.926 Ma-OPUS-server2_TS5-scwrl costs 337.851 real_cost = 346.976 Ma-OPUS-server2_TS4-scwrl costs 345.859 real_cost = 347.355 Ma-OPUS-server2_TS3-scwrl costs 343.148 real_cost = 329.457 Ma-OPUS-server2_TS2-scwrl costs 314.208 real_cost = 372.591 Ma-OPUS-server2_TS1-scwrl costs 305.245 real_cost = 324.797 MIG_FROST_AL1-scwrl costs 57395.5 real_cost = 492.041 LOOPP_TS5-scwrl costs 355.878 real_cost = 330.32 LOOPP_TS4-scwrl costs 530.048 real_cost = 368.612 LOOPP_TS3-scwrl costs 399.017 real_cost = 358.255 LOOPP_TS2-scwrl costs 411.161 real_cost = 367.974 LOOPP_TS1-scwrl costs 389.599 real_cost = 329.187 Huber-Torda-Server_TS5-scwrl costs 9579.15 real_cost = 370.56 Huber-Torda-Server_TS4-scwrl costs 28464.5 real_cost = 365.49 Huber-Torda-Server_TS3-scwrl costs 5085.04 real_cost = 398.655 Huber-Torda-Server_TS2-scwrl costs 20646.5 real_cost = 425.386 Huber-Torda-Server_TS1-scwrl costs 7534.15 real_cost = 382.739 HHpred3_TS1-scwrl costs 400.104 real_cost = 347.832 HHpred2_TS1-scwrl costs 395.215 real_cost = 356.125 HHpred1_TS1-scwrl costs 395.215 real_cost = 356.125 GeneSilicoMetaServer_TS5-scwrl costs 341.601 real_cost = 346.056 GeneSilicoMetaServer_TS4-scwrl costs 330.295 real_cost = 325.218 GeneSilicoMetaServer_TS3-scwrl costs 584.091 real_cost = 363.661 GeneSilicoMetaServer_TS2-scwrl costs 319.664 real_cost = 328.082 GeneSilicoMetaServer_TS1-scwrl costs 327.309 real_cost = 325.756 Frankenstein_TS3-scwrl costs 371.766 real_cost = 345.595 Frankenstein_TS2-scwrl costs 348.106 real_cost = 329.12 Frankenstein_TS1-scwrl costs 337.937 real_cost = 319.354 FUNCTION_TS5-scwrl costs 343.923 real_cost = 295.293 FUNCTION_TS4-scwrl costs 376.165 real_cost = 310.031 FUNCTION_TS3-scwrl costs 339.126 real_cost = 319.062 FUNCTION_TS2-scwrl costs 379.361 real_cost = 337.91 FUNCTION_TS1-scwrl costs 325.635 real_cost = 317.515 FUGUE_AL5-scwrl costs 26111.1 real_cost = 438.455 FUGUE_AL4-scwrl costs 88184.6 real_cost = 434.123 FUGUE_AL3-scwrl costs 44463.9 real_cost = 413.175 FUGUE_AL2-scwrl costs 1.00843e+06 real_cost = 417.379 FUGUE_AL1-scwrl costs 19520.2 real_cost = 341.123 FUGMOD_TS5-scwrl costs 331.898 real_cost = 332.545 FUGMOD_TS4-scwrl costs 329.346 real_cost = 342.3 FUGMOD_TS3-scwrl costs 347.682 real_cost = 360.735 FUGMOD_TS2-scwrl costs 371.688 real_cost = 326.956 FUGMOD_TS1-scwrl costs 994.383 real_cost = 331.244 FPSOLVER-SERVER_TS5-scwrl costs 379.35 real_cost = 365.038 FPSOLVER-SERVER_TS4-scwrl costs 377.936 real_cost = 345.534 FPSOLVER-SERVER_TS3-scwrl costs 384.393 real_cost = 379.889 FPSOLVER-SERVER_TS2-scwrl costs 387.747 real_cost = 364.958 FPSOLVER-SERVER_TS1-scwrl costs 369.479 real_cost = 354.672 FORTE2_AL5-scwrl costs 29630.1 real_cost = 430.189 FORTE2_AL4-scwrl costs 17829 real_cost = 440.097 FORTE2_AL3-scwrl costs 283569 real_cost = 430.026 FORTE2_AL2-scwrl costs 30059.1 real_cost = 420.301 FORTE2_AL1-scwrl costs 70932.4 real_cost = 399.418 FORTE1_AL5-scwrl costs 17829 real_cost = 440.097 FORTE1_AL4-scwrl costs 283569 real_cost = 430.026 FORTE1_AL3-scwrl costs 30059.1 real_cost = 420.301 FORTE1_AL2-scwrl costs 40992.2 real_cost = 459.749 FORTE1_AL1-scwrl costs 70932.4 real_cost = 399.418 FOLDpro_TS5-scwrl costs 321.705 real_cost = 337.542 FOLDpro_TS4-scwrl costs 357.519 real_cost = 301.859 FOLDpro_TS3-scwrl costs 367.529 real_cost = 350.991 FOLDpro_TS2-scwrl costs 335.502 real_cost = 306.673 FOLDpro_TS1-scwrl costs 326.269 real_cost = 326.415 FAMS_TS5-scwrl costs 383.265 real_cost = 334.355 FAMS_TS4-scwrl costs 325.635 real_cost = 317.515 FAMS_TS3-scwrl costs 339.126 real_cost = 319.062 FAMS_TS2-scwrl costs 331.69 real_cost = 311.92 FAMS_TS1-scwrl costs 342.001 real_cost = 294.482 FAMSD_TS5-scwrl costs 368.384 real_cost = 288.293 FAMSD_TS4-scwrl costs 353.239 real_cost = 300.069 FAMSD_TS3-scwrl costs 337.999 real_cost = 301.463 FAMSD_TS2-scwrl costs 347.928 real_cost = 307.149 FAMSD_TS1-scwrl costs 323.94 real_cost = 313.535 Distill_TS5-scwrl costs 1993.71 real_cost = 390.352 Distill_TS4-scwrl costs 1983.39 real_cost = 389.81 Distill_TS3-scwrl costs 1991.51 real_cost = 391.833 Distill_TS2-scwrl costs 1990.47 real_cost = 388.171 Distill_TS1-scwrl costs 1986.16 real_cost = 388.328 CaspIta-FOX_TS5-scwrl costs 498.795 real_cost = 334.406 CaspIta-FOX_TS4-scwrl costs 598.746 real_cost = 377.327 CaspIta-FOX_TS3-scwrl costs 401.335 real_cost = 293.725 CaspIta-FOX_TS2-scwrl costs 641.739 real_cost = 414.225 CaspIta-FOX_TS1-scwrl costs 498.756 real_cost = 337.37 CIRCLE_TS5-scwrl costs 348.537 real_cost = 318.962 CIRCLE_TS4-scwrl costs 338.058 real_cost = 289.429 CIRCLE_TS3-scwrl costs 383.265 real_cost = 334.355 CIRCLE_TS2-scwrl costs 331.69 real_cost = 311.92 CIRCLE_TS1-scwrl costs 323.94 real_cost = 313.535 Bilab-ENABLE_TS5-scwrl costs 350.936 real_cost = 347.339 Bilab-ENABLE_TS4-scwrl costs 341.146 real_cost = 316.723 Bilab-ENABLE_TS3-scwrl costs 321.939 real_cost = 322.789 Bilab-ENABLE_TS2-scwrl costs 299.627 real_cost = 325.565 Bilab-ENABLE_TS1-scwrl costs 303.597 real_cost = 325.917 BayesHH_TS1-scwrl costs 410.432 real_cost = 355.181 ABIpro_TS5-scwrl costs 377.112 real_cost = 306.429 ABIpro_TS4-scwrl costs 412.768 real_cost = 338.484 ABIpro_TS3-scwrl costs 380.523 real_cost = 341.224 ABIpro_TS2-scwrl costs 362.235 real_cost = 320.478 ABIpro_TS1-scwrl costs 409.897 real_cost = 311.884 3Dpro_TS5-scwrl costs 409.897 real_cost = 311.884 3Dpro_TS4-scwrl costs 309.777 real_cost = 329.486 3Dpro_TS3-scwrl costs 367.529 real_cost = 350.991 3Dpro_TS2-scwrl costs 321.705 real_cost = 337.542 3Dpro_TS1-scwrl costs 326.269 real_cost = 326.415 3D-JIGSAW_TS4-scwrl costs 405.219 real_cost = 320.997 3D-JIGSAW_TS3-scwrl costs 455.765 real_cost = 366.264 3D-JIGSAW_TS2-scwrl costs 458.845 real_cost = 303.755 3D-JIGSAW_TS1-scwrl costs 459.767 real_cost = 345.279 3D-JIGSAW_RECOM_TS5-scwrl costs 467.614 real_cost = 351.44 3D-JIGSAW_RECOM_TS4-scwrl costs 468.004 real_cost = 356.943 3D-JIGSAW_RECOM_TS3-scwrl costs 447.226 real_cost = 351.941 3D-JIGSAW_RECOM_TS2-scwrl costs 438.045 real_cost = 368.935 3D-JIGSAW_RECOM_TS1-scwrl costs 450.186 real_cost = 365.966 3D-JIGSAW_POPULUS_TS5-scwrl costs 350.049 real_cost = 297.267 3D-JIGSAW_POPULUS_TS4-scwrl costs 363.381 real_cost = 285.107 3D-JIGSAW_POPULUS_TS3-scwrl costs 362.468 real_cost = 287.513 3D-JIGSAW_POPULUS_TS2-scwrl costs 363.802 real_cost = 288.816 3D-JIGSAW_POPULUS_TS1-scwrl costs 367.102 real_cost = 335.147 dimer//zpzw costs 980.485 real_cost = 525.408 dimer//try8B costs 256.411 real_cost = 330.673 dimer//try8A costs 256.378 real_cost = 330.452 dimer//try8.unpack costs 256.378 real_cost = 330.452 dimer//try8 costs 256.378 real_cost = 330.452 dimer//try7B costs 258.881 real_cost = 293.357 dimer//try7A costs 258.579 real_cost = 293.373 dimer//try7.unpack costs 258.579 real_cost = 293.373 dimer//try7 costs 258.579 real_cost = 293.373 dimer//try2re costs 237.813 real_cost = 291.502 dimer//try2B costs 237.784 real_cost = 291.49 dimer//try2A costs 237.813 real_cost = 291.502 dimer//try2.unpack costs 237.813 real_cost = 291.502 dimer//try2 costs 237.813 real_cost = 291.502 dimer//ps-try2 costs 237.792 real_cost = 291.213 dimer//ps-3 costs 237.792 real_cost = 291.213 dimer//ps-2 costs 237.792 real_cost = 291.213 dimer//ps-1 costs 237.781 real_cost = 291.547 dimer//dimer-try8-2pol costs 256.387 real_cost = 330.466 dimer//dimer-try8-1y1a costs 256.376 real_cost = 330.68 dimer//dimer-try8-1pzw costs 256.357 real_cost = 331.839 dimer//dimer-try8-1nnq costs 256.404 real_cost = 330.493 dimer//dimer-try8-1fic costs 256.339 real_cost = 330.471 dimer//dimer-try7-2b99 costs 258.579 real_cost = 293.373 dimer//dimer-try5-1kaf.unpack costs 261.352 real_cost = 335.235 dimer//dimer-try5-1kaf costs 261.352 real_cost = 335.235 dimer//dimer-try2-1vm6 costs 237.792 real_cost = 291.213 dimer//dimer-try2-1e8o costs 237.802 real_cost = 291.506 dimer//dimer-try1-1xeb.unpack costs 253.64 real_cost = 323.233 dimer//dimer-try1-1xeb costs 253.64 real_cost = 323.233 dimer//dimer-1xeb-try1 costs 253.838 real_cost = 323.244 dimer//dimer-1vme-try1 costs 254.684 real_cost = 323.254 T0343.try9-opt2.repack-nonPC.pdb.gz costs 267.17 real_cost = 312.099 T0343.try9-opt2.pdb.gz costs 262.627 real_cost = 312.677 T0343.try9-opt2.gromacs0.repack-nonPC.pdb.gz costs 276.226 real_cost = 314.087 T0343.try9-opt2.gromacs0.pdb.gz costs 274.721 real_cost = 315.504 T0343.try9-opt1.pdb.gz costs 272.442 real_cost = 312.498 T0343.try9-opt1-scwrl.pdb.gz costs 273.672 real_cost = 312.133 T0343.try8-opt2.repack-nonPC.pdb.gz costs 261.328 real_cost = 343.405 T0343.try8-opt2.pdb.gz costs 256.387 real_cost = 330.683 T0343.try8-opt2.gromacs0.repack-nonPC.pdb.gz costs 278.329 real_cost = 338.132 T0343.try8-opt2.gromacs0.pdb.gz costs 276.998 real_cost = 333.187 T0343.try8-opt1.pdb.gz costs 272.909 real_cost = 332.518 T0343.try8-opt1-scwrl.pdb.gz costs 277.27 real_cost = 344.212 T0343.try7-opt2.repack-nonPC.pdb.gz costs 260.65 real_cost = 303.568 T0343.try7-opt2.pdb.gz costs 258.551 real_cost = 293.382 T0343.try7-opt2.gromacs0.repack-nonPC.pdb.gz costs 279.169 real_cost = 295.843 T0343.try7-opt2.gromacs0.pdb.gz costs 278.522 real_cost = 288.589 T0343.try7-opt1.pdb.gz costs 268.5 real_cost = 291.84 T0343.try7-opt1-scwrl.pdb.gz costs 271.888 real_cost = 292.076 T0343.try6-opt2.repack-nonPC.pdb.gz costs 277.222 real_cost = 300.513 T0343.try6-opt2.pdb.gz costs 273.199 real_cost = 300.447 T0343.try6-opt2.gromacs0.repack-nonPC.pdb.gz costs 301.077 real_cost = 300.896 T0343.try6-opt2.gromacs0.pdb.gz costs 298.951 real_cost = 301.722 T0343.try6-opt1.pdb.gz costs 280.185 real_cost = 301.121 T0343.try6-opt1-scwrl.pdb.gz costs 282.829 real_cost = 301.18 T0343.try5-opt2.repack-nonPC.pdb.gz costs 263.128 real_cost = 335.136 T0343.try5-opt2.pdb.gz costs 261.358 real_cost = 335.257 T0343.try5-opt2.gromacs0.repack-nonPC.pdb.gz costs 290.298 real_cost = 342.659 T0343.try5-opt2.gromacs0.pdb.gz costs 289.436 real_cost = 342.82 T0343.try5-opt1.pdb.gz costs 284.642 real_cost = 337.601 T0343.try5-opt1-scwrl.pdb.gz costs 291.287 real_cost = 337.171 T0343.try4-opt2.repack-nonPC.pdb.gz costs 284.538 real_cost = 318.702 T0343.try4-opt2.pdb.gz costs 279.492 real_cost = 318.569 T0343.try4-opt2.gromacs0.repack-nonPC.pdb.gz costs 308.172 real_cost = 319.446 T0343.try4-opt2.gromacs0.pdb.gz costs 306.579 real_cost = 319.918 T0343.try4-opt1.pdb.gz costs 292.001 real_cost = 338.361 T0343.try4-opt1-scwrl.pdb.gz costs 293.46 real_cost = 338.03 T0343.try3-opt2.repack-nonPC.pdb.gz costs 272.051 real_cost = 277.097 T0343.try3-opt2.pdb.gz costs 269.479 real_cost = 278.014 T0343.try3-opt2.gromacs0.repack-nonPC.pdb.gz costs 289.077 real_cost = 276.921 T0343.try3-opt2.gromacs0.pdb.gz costs 287.462 real_cost = 277.736 T0343.try3-opt1.pdb.gz costs 276.47 real_cost = 278.864 T0343.try3-opt1-scwrl.pdb.gz costs 278.726 real_cost = 277.947 T0343.try2-opt2.repack-nonPC.pdb.gz costs 240.916 real_cost = 291.234 T0343.try2-opt2.pdb.gz costs 237.806 real_cost = 291.493 T0343.try2-opt2.gromacs0.repack-nonPC.pdb.gz costs 256.764 real_cost = 291.936 T0343.try2-opt2.gromacs0.pdb.gz costs 255.147 real_cost = 291.657 T0343.try2-opt1.pdb.gz costs 249.956 real_cost = 289.865 T0343.try2-opt1-scwrl.pdb.gz costs 251.404 real_cost = 289.633 T0343.try10-opt2.repack-nonPC.pdb.gz costs 273.104 real_cost = 287.516 T0343.try10-opt2.pdb.gz costs 266.109 real_cost = 288.011 T0343.try10-opt2.gromacs0.repack-nonPC.pdb.gz costs 286.032 real_cost = 290.347 T0343.try10-opt2.gromacs0.pdb.gz costs 282.541 real_cost = 291.55 T0343.try10-opt1.pdb.gz costs 272.644 real_cost = 288.334 T0343.try10-opt1-scwrl.pdb.gz costs 275.726 real_cost = 287.35 T0343.try1-opt2.repack-nonPC.pdb.gz costs 258.507 real_cost = 311.173 T0343.try1-opt2.pdb.gz costs 254.438 real_cost = 323.252 T0343.try1-opt2.gromacs0.repack-nonPC.pdb.gz costs 282.397 real_cost = 326.034 T0343.try1-opt2.gromacs0.pdb.gz costs 279.575 real_cost = 326.891 T0343.try1-opt1.pdb.gz costs 271.441 real_cost = 321.712 T0343.try1-opt1-scwrl.pdb.gz costs 274.992 real_cost = 314.755 ../model5.ts-submitted costs 258.58 real_cost = 293.383 ../model4.ts-submitted costs 256.333 real_cost = 331.856 ../model3.ts-submitted costs 261.382 real_cost = 335.264 ../model2.ts-submitted costs 254.413 real_cost = 323.238 ../model1.ts-submitted costs 237.848 real_cost = 291.21 align5 costs 785.078 real_cost = 399.999 align4 costs 868.151 real_cost = 367.817 align3 costs 655.47 real_cost = 365.17 align2 costs 666.231 real_cost = 361.306 align1 costs 692.088 real_cost = 402.365 T0343.try1-opt2.pdb costs 254.438 real_cost = 323.252 model5-scwrl costs 258.58 real_cost = 293.383 model4-scwrl costs 256.333 real_cost = 331.856 model3-scwrl costs 261.382 real_cost = 335.264 model2-scwrl costs 254.413 real_cost = 323.238 model1-scwrl costs 237.848 real_cost = 291.21 T0343 costs 427.571 real_cost = -895 # command:CPU_time= 131.903 sec, elapsed time= 167.479 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.predburial.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.predburial.rdb mv -f decoys/evaluate.predburial.pretty decoys/evaluate.predburial.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.predburial.rdb > decoys/evaluate.predburial.pretty make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0343'