Best Alignments for T0343

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1hq0A/T0343-1hq0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hq0A/T0343-1hq0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.1304e+005.94e-07 1hzgA d.194.1.1
1p90A/T0343-1p90A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1p90A/T0343-1p90A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.2961e+002.49e-09 c.55.5.2
1y74A/T0343-1y74A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y74A/T0343-1y74A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.3588e+005.35e-02
2ap1A/T0343-2ap1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ap1A/T0343-2ap1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.6464e+001.84e-08
2bkrA/T0343-2bkrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bkrA/T0343-2bkrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.4327e+001.06e-05
1zxfA/T0343-1zxfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zxfA/T0343-1zxfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.3263e+006.38e+00
3cla/T0343-3cla-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3cla/T0343-3cla-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.3844e+001.00e-05 3cla c.43.1.1
2b49A/T0343-2b49A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b49A/T0343-2b49A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.8011e+001.39e-06
2eu9A/T0343-2eu9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2eu9A/T0343-2eu9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0800e+019.47e-05
1dc1A/T0343-1dc1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dc1A/T0343-1dc1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1652e+018.08e-07 1dc1A c.52.1.11

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001