# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ap1A 327 1.05e+00 1v4sA 455 1.10e+00 c.55.1.3,c.55.1.3 100309,100310 1p90A 145 1.39e+00 c.55.5.2 94377 1x3mA 415 1.48e+00 1yw5A 177 1.88e+00 2b49A 287 2.26e+00 1zgkA 308 2.54e+00 2beiA 170 2.56e+00 1jx4A 352 3.65e+00 d.240.1.1,e.8.1.7 90378,90379 1jhdA 396 3.72e+00 b.122.1.3,c.26.1.5 66712,66713 1zg2A 107 3.75e+00 1j5pA 253 4.41e+00 d.81.1.3,c.2.1.3 71577,83092 1sd4A 126 4.47e+00 a.4.5.39 105428 2dfkA 402 5.35e+00 1wdtA 665 6.34e+00 1svy 114 6.79e+00 1svy d.109.1.1 40831 1zc6A 305 6.84e+00 3cla 213 6.89e+00 3cla c.43.1.1 32610 1zin 217 7.42e+00 1zin c.37.1.1,g.41.2.1 31915,45178 2bkrA 212 7.47e+00 1poiB 260 7.65e+00 1poiB c.124.1.3 34155 1gvnB 287 9.14e+00 c.37.1.21 76354 1x6oA 174 9.30e+00 b.34.5.2,b.40.4.5 109493,109494 1a8l 226 9.60e+00 1a8l c.47.1.2,c.47.1.2 32777,32778 1q8yA 373 9.89e+00 d.144.1.7 96234 2eu9A 355 1.11e+01 2b5gA 171 1.15e+01 1f46A 140 1.16e+01 1f46A d.129.4.1 59643 1kjkA 64 1.16e+01 d.10.1.4 72613 1xs0A 136 1.24e+01 3nul 130 1.25e+01 3nul d.110.1.1 40891 2dp5A 332 1.29e+01 2a4hA 126 1.30e+01 2gtrA 261 1.31e+01 1gw5S 142 1.33e+01 d.110.4.2 70633 1lu4A 136 1.36e+01 c.47.1.10 91124 1k2eA 156 1.48e+01 d.113.1.1 72010 1tuaA 191 1.50e+01 d.51.1.1,d.51.1.1 107321,107322 2b7aA 293 1.59e+01 1g2rA 100 1.65e+01 1g2rA d.192.1.1 60231 1sqsA 242 1.68e+01 c.23.5.5 98968 1wi1A 126 1.74e+01 1wnaA 131 1.76e+01 1qhtA 775 1.81e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1pi1A 185 1.85e+01 a.29.7.1 94699 1r5iD 216 1.85e+01 a.202.1.1 97091 1xg0B 67 1.91e+01 1zd8A 227 1.92e+01 2a2pA 129 1.94e+01 1z83A 196 1.96e+01 1woqA 267 2.02e+01 c.55.1.10,c.55.1.10 109462,109463 1meoA 209 2.03e+01 c.65.1.1 79035 1uwzA 136 2.07e+01 c.97.1.1 108081 2cr9A 139 2.08e+01 1qmvA 197 2.15e+01 1qq2A c.47.1.10 33066 2ak3A 226 2.17e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1iznA 286 2.17e+01 e.43.1.1 83847 1uoyA 64 2.22e+01 g.3.19.1 99709 1m2kA 249 2.22e+01 c.31.1.5 84754 1lkkA 105 2.25e+01 1lckA d.93.1.1 40412 1gpc 218 2.26e+01 1gpc b.40.4.7 25393 1yd0A 96 2.28e+01 1t3uA 104 2.29e+01 d.244.1.1 99120 1q8iA 783 2.38e+01 c.55.3.5,e.8.1.1 96208,96209 1k8kC 372 2.40e+01 b.69.4.1 68308 1s3cA 141 2.41e+01 1y74A 57 2.44e+01 1pinA 163 2.57e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 2a6hE 99 2.67e+01 1rlzA 369 2.69e+01 c.31.1.1 104989 1eo1A 124 2.82e+01 1eo1A c.55.5.1 33739 2ajrA 331 2.84e+01 1lc0A 294 2.90e+01 c.2.1.3,d.81.1.4 73823,73824 1zxuA 217 2.90e+01 1ovnA 248 2.90e+01 a.71.1.1,c.47.1.7 93602,93603 1w9cA 321 2.91e+01 1kcqA 104 3.04e+01 d.109.1.1 68449 1vjlA 164 3.10e+01 d.257.1.1 100822 2fr1A 486 3.17e+01 1vl4A 447 3.25e+01 d.283.1.1 108718 1r1qA 100 3.27e+01 d.93.1.1 104763 2gx9A 129 3.28e+01 1ig8A 486 3.30e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 2a9sA 171 3.35e+01 1xg8A 111 3.38e+01 1ohzB 60 3.42e+01 a.139.1.1 93044 1on0A 158 3.51e+01 d.108.1.1 87095 1nrvA 105 3.52e+01 d.93.1.1 86126 2es9A 115 3.54e+01 1z5yE 149 3.56e+01 1xewX 182 3.57e+01 1dkzA 219 3.62e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1xodA 118 3.64e+01 1whzA 70 3.65e+01 1ytqA 204 3.66e+01 2fhzA 109 3.68e+01 1ifrA 121 3.72e+01 b.1.16.1 71203 1ztpA 251 3.73e+01 1ayoA 130 3.73e+01 1ayoA b.2.4.1 22431 1jqlB 140 3.77e+01 c.37.1.20 63234 1kngA 156 3.79e+01 c.47.1.10 72777 1x9mA 698 3.87e+01 1xd5A 112 3.91e+01 1gtkA 313 3.94e+01 c.94.1.1,d.50.2.1 76346,76347 2a1kA 233 4.02e+01 2sak 121 4.03e+01 2sak d.15.5.1 37711 1pbyB 337 4.06e+01 b.69.2.2 94422 1tc5A 194 4.07e+01 c.110.1.1 106752 2a6hC 1119 4.09e+01 1pcfA 66 4.24e+01 1pcfA d.18.1.1 38142 2c60A 111 4.29e+01 1shfA 59 4.33e+01 1bbzA b.34.2.1 24462 1u00A 227 4.35e+01 1e8yA 966 4.39e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2f51A 118 4.39e+01 1q15A 503 4.49e+01 c.26.2.1,d.153.1.1 95538,95539 2a5yB 549 4.49e+01 1nz0A 118 4.58e+01 d.14.1.2 86433 2al6A 375 4.59e+01 1dm9A 133 4.70e+01 1dm9A d.66.1.3 39560 1wrjA 156 4.74e+01 1lvwA 295 4.75e+01 c.68.1.6 84723 1io1A 398 4.77e+01 1io1A e.32.1.1 62611 1khdA 345 4.83e+01 a.46.2.1,c.27.1.1 77400,77401 1mkiA 330 4.84e+01 e.3.1.2 84994 1ooeA 236 4.85e+01 c.2.1.2 87196 2atzA 180 4.85e+01 1sazA 381 4.88e+01 1jkxA 212 4.88e+01 c.65.1.1 66813 1z2mA 155 5.00e+01 1uj0A 62 5.03e+01 b.34.2.1 99449 1v58A 241 5.06e+01 c.47.1.9,d.17.3.1 108371,108372 1fmtA 314 5.06e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1vheA 373 5.10e+01 b.49.3.1,c.56.5.4 100669,100670 1lehA 364 5.18e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1o13A 136 5.18e+01 c.55.5.1 80762 1l3lA 234 5.19e+01 a.4.6.2,d.110.5.1 73541,73542 2f5gA 133 5.29e+01 1iktA 120 5.38e+01 d.106.1.1 66188 1p2fA 220 5.38e+01 a.4.6.1,c.23.1.1 87720,87721 1h3gA 601 5.41e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1sk4A 163 5.44e+01 d.118.1.1 105664 1otgA 125 5.47e+01 1otgA d.80.1.2 39831 1vk8A 106 5.49e+01 d.58.48.1 108636 1qc7A 101 5.54e+01 1qc7A a.118.14.1 18456 1nxhA 126 5.56e+01 a.200.1.1 92300 1ofuX 119 5.62e+01 c.37.1.22 86976 2c31A 568 5.71e+01 1z9iA 53 5.75e+01 2bo9B 222 5.82e+01 1pme 380 5.85e+01 1hcl d.144.1.7 41653 1hw6A 278 5.86e+01 1frb c.1.7.1 61296 1n4wA 504 5.91e+01 c.3.1.2,d.16.1.1 91676,91677 2acaA 189 5.96e+01 1nuyA 337 5.96e+01 e.7.1.1 86213 2a33A 215 5.97e+01 2b5eA 504 6.03e+01 1zmeC 70 6.10e+01 1zmeC g.38.1.1,h.1.3.1 45081,45514 2fy6A 143 6.14e+01 1fs0E 138 6.15e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 2a10A 125 6.15e+01 1gxqA 106 6.15e+01 a.4.6.1 70721 1qf9A 194 6.17e+01 1zin c.37.1.1 31848 1qb5D 99 6.18e+01 b.40.2.1 88357 2gcc 70 6.25e+01 2gcc d.10.1.2 37484 1s3aA 102 6.26e+01 1ad1A 266 6.30e+01 1aj2 c.1.21.1 29668 1p4kA 295 6.30e+01 d.153.1.5 87772 1frd 98 6.31e+01 1awd d.15.4.1 37648 1ub9A 100 6.37e+01 a.4.5.28 99159 1eajA 126 6.41e+01 1f5wA b.1.1.1 59401 1gkmA 509 6.42e+01 a.127.1.2 70228 3il8 72 6.47e+01 1tvxA d.9.1.1 37356 1z0kB 69 6.50e+01 1uwmA 106 6.59e+01 1yvoA 172 6.64e+01 1gky 187 6.72e+01 1gky c.37.1.1 31839 1lba 146 6.78e+01 1lba d.118.1.1 41062 1k3yA 221 6.79e+01 a.45.1.1,c.47.1.5 77245,77246 1x0rA 249 6.92e+01 1aba 87 6.95e+01 1aba c.47.1.1 32760 1czpA 98 6.96e+01 1awd d.15.4.1 37645 1xc3A 302 6.97e+01 1i6aA 219 6.98e+01 c.94.1.1 61827 1w9aA 147 6.98e+01 1uanA 227 7.05e+01 c.134.1.1 99135 1hqz1 141 7.05e+01 1n4kA 381 7.10e+01 a.118.22.1,b.42.6.1 79992,79993 2g7zA 282 7.12e+01 1jnrB 150 7.13e+01 d.58.1.5 66969 2biiA 424 7.15e+01 1khiA 176 7.15e+01 b.34.5.2,b.40.4.5 77408,77409 1svdM 110 7.20e+01 1czaN 917 7.20e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1zkrA 153 7.27e+01 1sixA 174 7.35e+01 b.85.4.1 98892 1qy1A 174 7.36e+01 b.60.1.1 96568 1vbvA 105 7.36e+01 1t1vA 93 7.38e+01 c.47.1.14 106278 1unqA 125 7.40e+01 b.55.1.1 107968 1t0fA 276 7.43e+01 1zjcA 418 7.43e+01 1mwpA 96 7.46e+01 1mwpA d.170.2.1 42453 1qz8A 113 7.46e+01 b.140.1.1 96619 2fp8A 322 7.49e+01 1x8qA 184 7.53e+01 2gm3A 175 7.60e+01 1mbyA 88 7.60e+01 d.223.1.1 78931 1q1fA 151 7.60e+01 a.1.1.2 104476 1uheA 97 7.65e+01 2c27A 315 7.66e+01 1q1rA 431 7.68e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1cb8A 678 7.70e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 2gk4A 232 7.78e+01 1ckaA 57 7.82e+01 1ckaA b.34.2.1 24459 1k07A 263 7.91e+01 d.157.1.1 77218 1vhoA 346 7.91e+01 b.49.3.1,c.56.5.4 100694,100695 1m8aA 70 7.94e+01 d.9.1.1 74579 1lniA 96 7.99e+01 d.1.1.2 74046 1wt4A 73 7.99e+01 1ub4A 110 8.06e+01 b.34.6.2 88399 1v54J 59 8.09e+01 f.23.4.1 100331 1r1mA 164 8.13e+01 d.79.7.1 96820 1g60A 260 8.15e+01 c.66.1.11 70151 1ppjF 110 8.18e+01 f.27.1.1 104262 1fjgK 129 8.21e+01 1fjfK c.55.4.1 33733 1jl2A 156 8.22e+01 c.55.3.1 66822 1lktA 104 8.24e+01 1lktA b.90.1.1 28398 1k32A 1045 8.25e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2a7yA 83 8.28e+01 1wz8A 264 8.30e+01 1e7uA 961 8.35e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1iq4A 179 8.46e+01 1iq4A d.77.1.1 62641 2cn3A 737 8.60e+01 2fz4A 237 8.67e+01 1q9uA 130 8.68e+01 d.129.7.1 96314 1hywA 68 8.69e+01 1hywA d.186.1.1 61425 1kjwA 295 8.73e+01 b.34.2.1,c.37.1.1 68643,68644 1vhxA 150 8.74e+01 c.55.3.8 100712 1k4mA 213 8.75e+01 c.26.1.3 77258 1c93A 265 8.76e+01 2ebn c.1.8.5 28998 1nd6A 354 8.82e+01 c.60.1.2 80407 1vqoB 338 8.85e+01 1t6cA 315 8.87e+01 c.55.1.8,c.55.1.8 106558,106559 1tvxA 75 8.93e+01 1tvxA d.9.1.1 37441 1ayaA 101 8.96e+01 1qadA d.93.1.1 40460 1hh1A 143 8.99e+01 1gefA c.52.1.18 61036