# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g291 372 1.12e+00 1g291 1y0uA 96 1.15e+00 2bt2A 161 1.25e+00 1p90A 145 1.27e+00 c.55.5.2 94377 1zxfA 155 1.51e+00 1e8yA 966 1.77e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1spgA 144 1.87e+00 1abwA a.1.1.2 15409 2d00A 109 2.67e+00 1y74A 57 3.04e+00 3cla 213 3.18e+00 3cla c.43.1.1 32610 1xb4A 202 4.17e+00 1cy5A 97 5.53e+00 1cy5A a.77.1.3 18430 1dkzA 219 5.86e+00 1dkzA a.8.4.1,b.130.1.1 90345,90346 1wt4A 73 5.88e+00 1zxuA 217 6.13e+00 1kid 203 6.17e+00 1derA c.8.5.1 30771 1wkbA 810 6.47e+00 1v54E 109 6.53e+00 a.118.11.1 100326 1qwtA 255 6.93e+00 b.26.1.3 96501 1lba 146 7.22e+00 1lba d.118.1.1 41062 1ckaA 57 7.32e+00 1ckaA b.34.2.1 24459 1q8yA 373 7.37e+00 d.144.1.7 96234 1e7uA 961 7.62e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1kjkA 64 7.92e+00 d.10.1.4 72613 1zkrA 153 8.20e+00 256bA 106 8.59e+00 256bA a.24.3.1 16539 2fn0A 437 8.94e+00 1ofuX 119 9.19e+00 c.37.1.22 86976 1t0iA 191 9.24e+00 c.23.5.4 106209 1n8fA 350 9.40e+00 c.1.10.4 85397 1h2kA 349 9.55e+00 b.82.2.6 76572 1uptA 171 9.59e+00 c.37.1.8 99767 1k8kC 372 9.63e+00 b.69.4.1 68308 1na3A 91 1.05e+01 k.38.1.1 85481 2aioA 269 1.09e+01 1k07A 263 1.13e+01 d.157.1.1 77218 2eu9A 355 1.14e+01 1f53A 84 1.21e+01 1f53A b.11.1.4 23632 1qo3C 137 1.26e+01 1qo3C d.169.1.1 42350 1cuk 203 1.26e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1o17A 345 1.28e+01 a.46.2.1,c.27.1.1 80765,80766 1p7gA 222 1.29e+01 a.2.11.1,d.44.1.1 94223,94224 1w8iA 156 1.32e+01 1ytqA 204 1.32e+01 1qc7A 101 1.33e+01 1qc7A a.118.14.1 18456 1yb0A 159 1.43e+01 1kkhA 317 1.47e+01 d.14.1.5,d.58.26.3 72645,72646 1puoA 170 1.47e+01 a.101.1.1,a.101.1.1 95134,95135 1dk8A 147 1.47e+01 1agrE a.91.1.1 18548 1pch 88 1.48e+01 1ptf d.94.1.1 40564 2gtrA 261 1.53e+01 1tffA 234 1.55e+01 d.3.1.11 106854 1tuaA 191 1.57e+01 d.51.1.1,d.51.1.1 107321,107322 1jhgA 101 1.63e+01 1jhgA a.4.12.1 19009 1mqeA 207 1.64e+01 d.113.1.1 91394 2f22A 144 1.64e+01 1jx4A 352 1.66e+01 d.240.1.1,e.8.1.7 90378,90379 2br9A 234 1.66e+01 2es9A 115 1.67e+01 1ux8A 132 1.79e+01 1z57A 339 1.80e+01 1z83A 196 1.87e+01 1p57A 114 1.93e+01 d.170.1.2 94125 1wz8A 264 1.98e+01 1yz7A 188 2.04e+01 1zpyA 95 2.06e+01 1lldA 319 2.12e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1orjA 130 2.14e+01 a.24.19.1 93456 2a7kA 250 2.16e+01 2a10A 125 2.19e+01 1rylA 167 2.23e+01 d.276.1.1 105124 1u9lA 70 2.38e+01 a.60.4.2 107751 1rz3A 201 2.46e+01 c.37.1.6 98132 1gw5S 142 2.51e+01 d.110.4.2 70633 3pviA 157 2.56e+01 3pviA c.52.1.6 33300 3fruA 269 2.56e+01 1agdA b.1.1.2,d.19.1.1 20657,38150 1mpxA 615 2.60e+01 b.18.1.13,c.69.1.21 85041,85042 2aieP 203 2.69e+01 1ua4A 455 2.70e+01 c.72.1.3 99128 1tueA 212 2.77e+01 c.37.1.20 107323 1nh8A 304 2.92e+01 c.94.1.1,d.58.5.3 80507,80508 1xd5A 112 3.06e+01 1hq0A 295 3.10e+01 1hzgA d.194.1.1 61122 1gvjA 146 3.12e+01 a.4.5.21 90525 1mw5A 187 3.14e+01 d.259.1.1 91477 2ahmA 88 3.15e+01 1w2qA 127 3.18e+01 1bm4A 32 3.25e+01 1bm4A j.47.1.1 46325 2bo9A 308 3.32e+01 2gi3A 476 3.33e+01 1evhA 112 3.35e+01 1evhA b.55.1.4 26997 1hssA 124 3.39e+01 1bea a.52.1.2 17819 1qbjA 81 3.40e+01 1qbjA a.4.5.19 16155 1ig8A 486 3.41e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1yvoA 172 3.46e+01 1vl4A 447 3.51e+01 d.283.1.1 108718 1w6vA 141 3.52e+01 1gd0A 122 3.56e+01 1dptA d.80.1.3 39834 1fj2A 232 3.58e+01 1auoA c.69.1.14 34720 1hulA 108 3.71e+01 1hulA a.26.1.2 16865 1zgyA 272 3.72e+01 1dyoA 160 3.77e+01 1dyoA b.18.1.7 23771 1ail 73 3.79e+01 1ail a.16.1.1 16381 1zdnA 158 3.80e+01 1omrA 201 3.82e+01 a.39.1.5 93349 1if1A 113 3.87e+01 2irfG a.4.5.23 16183 1fqiA 147 3.87e+01 1agrE a.91.1.1 18542 1jbkA 195 3.98e+01 c.37.1.20 71631 1r1tA 122 4.04e+01 a.4.5.5 104769 1z23A 163 4.04e+01 1zvaA 77 4.07e+01 1z72A 225 4.09e+01 1wad 112 4.13e+01 3cyr a.138.1.1 19658 1zvdA 380 4.20e+01 1ohzB 60 4.36e+01 a.139.1.1 93044 1yx4A 132 4.37e+01 1q7zA 566 4.39e+01 c.1.21.2,c.1.26.1 96090,96091 1z9zA 60 4.42e+01 1wovA 250 4.42e+01 1vqoB 338 4.43e+01 1em8A 147 4.44e+01 c.128.1.1 90457 1ykiA 217 4.51e+01 1svmA 377 4.56e+01 1dc1A 323 4.61e+01 1dc1A c.52.1.11 33321 1x31C 206 4.67e+01 1a8y 367 4.69e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1r4xA 275 4.73e+01 b.1.10.3,d.105.1.2 97054,97055 2bnxA 386 4.78e+01 1yw5A 177 4.83e+01 1tn6B 437 4.93e+01 1hw6A 278 4.99e+01 1frb c.1.7.1 61296 1xvhA 129 5.02e+01 1c1dA 355 5.06e+01 1bw9A c.2.1.7,c.58.1.1 30270,33918 1us0A 316 5.06e+01 c.1.7.1 99850 1dugA 234 5.15e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1g03A 134 5.29e+01 1qrjB a.73.1.1 60162 2ex3B 264 5.42e+01 1o8vA 134 5.45e+01 b.60.1.2 86680 1wj9A 211 5.53e+01 1wb9A 800 5.62e+01 1r7cA 31 5.64e+01 j.35.1.1 104831 1vqoR 155 5.64e+01 3fapB 94 5.65e+01 1nsgB a.24.7.1 16612 1npiA 61 5.70e+01 g.3.7.1 80685 1c8cA 64 5.79e+01 1azpA b.34.13.1 59084 1z5bA 469 5.90e+01 1sd4A 126 5.96e+01 a.4.5.39 105428 1a7j 290 6.02e+01 1a7j c.37.1.6 31952 1srvA 145 6.04e+01 1derA c.8.5.1 30817 2bibA 547 6.12e+01 2fpeA 62 6.17e+01 1zmeC 70 6.17e+01 1zmeC g.38.1.1,h.1.3.1 45081,45514 2a7mA 250 6.22e+01 1w66A 232 6.24e+01 1eu8A 409 6.24e+01 1eu8A c.94.1.1 59502 1gqpA 221 6.27e+01 b.18.1.9 70372 1y14A 187 6.40e+01 1aa7A 158 6.43e+01 1aa7A a.95.1.1 18741 1s2wA 295 6.58e+01 c.1.12.7 98407 1ayoA 130 6.73e+01 1ayoA b.2.4.1 22431 1r5iD 216 6.81e+01 a.202.1.1 97091 1tmxA 293 6.94e+01 1tg0A 68 6.96e+01 2ak3A 226 6.97e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1k4mA 213 7.00e+01 c.26.1.3 77258 1yemA 179 7.08e+01 2a19A 175 7.22e+01 2b0jA 358 7.23e+01 1np3A 338 7.26e+01 a.100.1.2,c.2.1.6 85946,85947 1wkaA 147 7.36e+01 1lki 180 7.37e+01 1lki a.26.1.1 16829 2cohA 202 7.47e+01 2al2A 436 7.50e+01 1yqhA 109 7.54e+01 1k2eA 156 7.57e+01 d.113.1.1 72010 1pg4A 652 7.58e+01 e.23.1.1 88067 1s2oA 244 7.61e+01 1xyiA 66 7.64e+01 2cvjA 180 7.65e+01 1ep3B 262 7.69e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1lf7A 182 7.69e+01 b.60.1.1 73878 1v0dA 329 7.79e+01 d.4.1.7 108204 1v0wA 506 7.91e+01 d.136.1.2,d.136.1.2 108220,108221 1auk 489 7.92e+01 1auk c.76.1.2 35030 1wqaA 455 8.02e+01 1r6xA 395 8.06e+01 b.122.1.3,c.26.1.5 97167,97168 2fggA 101 8.12e+01 1wleA 501 8.23e+01 1llnA 262 8.29e+01 d.165.1.1 84625 1ds1A 324 8.34e+01 1drtA b.82.2.2 28127 1k3yA 221 8.34e+01 a.45.1.1,c.47.1.5 77245,77246 1qjtA 99 8.42e+01 1eh2 a.39.1.6 17335 3pmgA 561 8.46e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2c12A 439 8.53e+01 2dlbA 80 8.57e+01 1pinA 163 8.75e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 1t7rA 269 8.76e+01 a.123.1.1 106635 1lfpA 249 8.77e+01 e.39.1.1 73885 1je8A 82 8.82e+01 a.4.6.2 77108 1zd8A 227 8.82e+01