# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1y0uA 96 1.19e+00 1cy5A 97 1.45e+00 1cy5A a.77.1.3 18430 1zxfA 155 1.74e+00 2bnxA 386 2.29e+00 2ak3A 226 3.54e+00 1zin c.37.1.1,g.41.2.1 31892,45193 1r6xA 395 4.87e+00 b.122.1.3,c.26.1.5 97167,97168 1u9lA 70 5.08e+00 a.60.4.2 107751 1g291 372 5.22e+00 1g291 2ayuA 417 5.51e+00 1vf7A 369 5.76e+00 f.46.1.1 108557 1kjkA 64 5.77e+00 d.10.1.4 72613 1z83A 196 8.21e+00 1n0uA 842 8.84e+00 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1zd8A 227 9.70e+00 2d00A 109 9.87e+00 1bm4A 32 9.87e+00 1bm4A j.47.1.1 46325 1qo3C 137 1.01e+01 1qo3C d.169.1.1 42350 2bt2A 161 1.01e+01 1na3A 91 1.05e+01 k.38.1.1 85481 1opc 110 1.25e+01 1opc a.4.6.1 16231 1lm8V 160 1.30e+01 b.3.3.1 74035 1hulA 108 1.41e+01 1hulA a.26.1.2 16865 2gtrA 261 1.56e+01 1xd5A 112 1.69e+01 1orjA 130 1.73e+01 a.24.19.1 93456 1umkA 275 1.77e+01 1ig8A 486 1.78e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 2bibA 547 1.80e+01 1p90A 145 1.83e+01 c.55.5.2 94377 1w8iA 156 1.87e+01 1spgA 144 1.90e+01 1abwA a.1.1.2 15409 1ytqA 204 1.98e+01 1qz8A 113 2.06e+01 b.140.1.1 96619 1uhnA 189 2.07e+01 a.39.1.5 99399 1xb4A 202 2.15e+01 1f53A 84 2.22e+01 1f53A b.11.1.4 23632 1np3A 338 2.24e+01 a.100.1.2,c.2.1.6 85946,85947 1omrA 201 2.27e+01 a.39.1.5 93349 1zxuA 217 2.35e+01 1zkrA 153 2.38e+01 2ba2A 85 2.61e+01 2bfdB 345 2.62e+01 1fqiA 147 2.68e+01 1agrE a.91.1.1 18542 2es9A 115 2.69e+01 2fji1 399 2.73e+01 256bA 106 2.74e+01 256bA a.24.3.1 16539 1z5sD 83 2.79e+01 1v38A 78 2.81e+01 a.60.1.2 100280 1x7yB 342 2.92e+01 1gu4A 78 2.96e+01 h.1.3.1 83317 1r4xA 275 2.98e+01 b.1.10.3,d.105.1.2 97054,97055 1914 232 3.01e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1fna 93 3.03e+01 1fnf b.1.2.1 21971 1ia8A 289 3.04e+01 1ia8A d.144.1.7 62112 1smoA 119 3.21e+01 b.1.1.1 105764 1xneA 113 3.22e+01 1zdrA 164 3.32e+01 1e8yA 966 3.40e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1xg0B 67 3.43e+01 2bf6A 449 3.54e+01 1t0fA 276 3.61e+01 2eu9A 355 3.61e+01 1v54J 59 3.61e+01 f.23.4.1 100331 1fit 147 3.67e+01 1fit d.13.1.1 37499 1q5hA 147 4.07e+01 b.85.4.1 95893 1k3yA 221 4.08e+01 a.45.1.1,c.47.1.5 77245,77246 1qf8A 182 4.25e+01 1qf8A g.41.4.1 45212 1r5iD 216 4.26e+01 a.202.1.1 97091 1wt4A 73 4.27e+01 1puoA 170 4.70e+01 a.101.1.1,a.101.1.1 95134,95135 1y74A 57 4.75e+01 1z9zA 60 4.79e+01 1wgxA 73 4.87e+01 1wlmA 151 4.87e+01 1lg7A 182 4.96e+01 d.213.1.1 73888 5pal 109 5.04e+01 1a75A a.39.1.4 17215 1mzbA 136 5.14e+01 a.4.5.42 91497 1k07A 263 5.14e+01 d.157.1.1 77218 2a6hC 1119 5.41e+01 2a4hA 126 5.45e+01 1dkzA 219 5.60e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1rz3A 201 5.64e+01 c.37.1.6 98132 1zsoA 164 5.76e+01 1pch 88 5.90e+01 1ptf d.94.1.1 40564 1jhdA 396 6.01e+01 b.122.1.3,c.26.1.5 66712,66713 1qwtA 255 6.21e+01 b.26.1.3 96501 1r1tA 122 6.24e+01 a.4.5.5 104769 2f40A 96 6.25e+01 1ayoA 130 6.53e+01 1ayoA b.2.4.1 22431 1fbr 93 6.75e+01 1fbr g.27.1.1,g.27.1.1 44948,44949 2f22A 144 6.80e+01 2djkA 133 6.83e+01 1wz8A 264 7.10e+01 1n8fA 350 7.18e+01 c.1.10.4 85397 1dfuP 94 7.22e+01 1dfuP b.53.1.1 26936 1ois 223 7.22e+01 1a36A e.15.1.1 43267 1yvrA 538 7.28e+01 1yvoA 172 7.47e+01 1v0dA 329 7.47e+01 d.4.1.7 108204 1d3bB 91 7.56e+01 1d3bB b.38.1.1 24804 2bc4A 211 7.60e+01 1wflA 74 7.62e+01 1i7dA 659 7.66e+01 1d6mA e.10.1.1 61886 1vliA 385 7.68e+01 b.85.1.1,c.1.10.6 108830,108831 1lrzA 426 7.69e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1pg4A 652 7.88e+01 e.23.1.1 88067 1yaxA 153 7.92e+01 1senA 164 8.07e+01 c.47.1.1 105465 1hfc 169 8.12e+01 1hfc d.92.1.11 40335 1irzA 64 8.12e+01 a.4.1.11 76772 4cpv 109 8.18e+01 1a75A a.39.1.4 17198 2govA 195 8.25e+01 1rz2A 254 8.30e+01 b.100.1.1 105130 1iznB 277 8.35e+01 e.43.1.2 83848 1ka2A 499 8.44e+01 d.92.1.5 77305 1lam 484 8.48e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1jx4A 352 8.55e+01 d.240.1.1,e.8.1.7 90378,90379 2ezk 99 8.57e+01 2ezk a.4.1.2 16027 1ezjA 115 8.61e+01 1ezjA h.1.14.1 45638 2a50A 73 8.63e+01 1g1xC 88 8.64e+01 1fjfR a.4.8.1 16249 3il8 72 8.66e+01 1tvxA d.9.1.1 37356 1regX 122 8.81e+01 1regX d.58.27.1 39406 1sqeA 109 8.85e+01 d.58.4.5 105908 1v2bA 177 8.88e+01 d.107.1.2 108279