# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bkrA 212 6.98e-01 1dc1A 323 7.41e-01 1dc1A c.52.1.11 33321 2bkqA 212 1.48e+00 2dg5B 190 1.68e+00 1kcqA 104 3.17e+00 d.109.1.1 68449 1y74A 57 3.24e+00 2g8yA 385 3.56e+00 1lehA 364 3.74e+00 1bw9A c.2.1.7,c.58.1.1 30268,33916 1vicA 262 4.02e+00 c.68.1.13 100756 1rjdA 334 4.38e+00 c.66.1.37 97558 1gci 269 5.14e+00 1gci c.41.1.1 32503 1vljA 407 5.50e+00 e.22.1.2 108832 1fhuA 320 6.07e+00 1fhuA c.1.11.2,d.54.1.1 29234,38878 1hq0A 295 6.59e+00 1hzgA d.194.1.1 61122 1r6wA 322 6.63e+00 c.1.11.2,d.54.1.1 97165,97166 1vl4A 447 6.87e+00 d.283.1.1 108718 2b49A 287 6.93e+00 2ap1A 327 7.52e+00 1jx4A 352 7.61e+00 d.240.1.1,e.8.1.7 90378,90379 1hqz1 141 7.75e+00 1zxuA 217 7.85e+00 2eu9A 355 8.59e+00 1o2dA 371 8.92e+00 e.22.1.2 86591 1o5kA 306 9.15e+00 c.1.10.1 92504 2h1tA 188 9.17e+00 1yu6A 275 9.30e+00 1v52A 133 1.06e+01 1kjkA 64 1.07e+01 d.10.1.4 72613 1gc5A 467 1.11e+01 1gc5A c.72.1.3 60429 2cayA 145 1.14e+01 1uptC 170 1.15e+01 c.37.1.8 99769 1lw6E 281 1.16e+01 c.41.1.1 74293 1sup 275 1.18e+01 1gci c.41.1.1 32510 1uptA 171 1.22e+01 c.37.1.8 99767 1c93A 265 1.22e+01 2ebn c.1.8.5 28998 1euvA 221 1.31e+01 1euvA d.3.1.7 37133 1mkp 144 1.32e+01 1vhrA c.45.1.1 32654 1gw5S 142 1.34e+01 d.110.4.2 70633 2ebn 289 1.39e+01 2ebn c.1.8.5 28990 1on0A 158 1.42e+01 d.108.1.1 87095 1wsrA 375 1.43e+01 1to2E 281 1.46e+01 1edt 271 1.53e+01 2ebn c.1.8.5 28993 1ofuX 119 1.56e+01 c.37.1.22 86976 1ooeA 236 1.62e+01 c.2.1.2 87196 1pgs 314 1.64e+01 1pgs b.121.1.1,b.121.1.1 23653,23654 1p5dX 463 1.72e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1em8A 147 1.74e+01 c.128.1.1 90457 1wbpA 397 1.81e+01 1ayoA 130 1.82e+01 1ayoA b.2.4.1 22431 1vlwA 217 1.85e+01 c.1.10.1 108868 1ytqA 204 1.88e+01 1r4aA 165 1.90e+01 c.37.1.8 96986 1pme 380 1.91e+01 1hcl d.144.1.7 41653 1sh7A 284 1.97e+01 1zrzA 364 1.98e+01 1p90A 145 2.06e+01 c.55.5.2 94377 1p57A 114 2.06e+01 d.170.1.2 94125 1k2yX 463 2.07e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1u5tC 202 2.19e+01 a.4.5.54,a.4.5.54 107688,107689 1vpjA 192 2.24e+01 1udxA 416 2.26e+01 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1zo0A 126 2.26e+01 1tuoA 464 2.28e+01 1cseE 274 2.28e+01 1gci c.41.1.1 32481 1wb4A 297 2.31e+01 1hw6A 278 2.32e+01 1frb c.1.7.1 61296 1pi1A 185 2.35e+01 a.29.7.1 94699 1r0rE 274 2.38e+01 c.41.1.1 96735 2a10A 125 2.38e+01 1xt9A 212 2.39e+01 1uanA 227 2.41e+01 c.134.1.1 99135 1vsd 152 2.41e+01 1cxqA c.55.3.2 33625 1gklA 297 2.44e+01 c.69.1.2 65250 2g6bA 180 2.50e+01 1uwzA 136 2.60e+01 c.97.1.1 108081 3cla 213 2.60e+01 3cla c.43.1.1 32610 2govA 195 2.63e+01 1poiB 260 2.64e+01 1poiB c.124.1.3 34155 1k2eA 156 2.65e+01 d.113.1.1 72010 1howA 373 2.67e+01 1hcl d.144.1.7 41679 1txoA 237 2.70e+01 1tiiD 99 2.79e+01 1tiiD b.40.2.1 24965 1wtaA 275 2.80e+01 2fm8A 135 2.81e+01 1u9tA 354 2.82e+01 1jm1A 204 2.87e+01 b.33.1.1 71745 1zxfA 155 2.90e+01 1nrjB 218 2.95e+01 c.37.1.8 86125 1qb5D 99 2.96e+01 b.40.2.1 88357 1tvoA 368 3.02e+01 1q8yA 373 3.03e+01 d.144.1.7 96234 2az4A 429 3.06e+01 1wa3A 205 3.12e+01 1sz2A 332 3.13e+01 1x72A 334 3.16e+01 d.126.1.6 109495 1rybA 212 3.19e+01 c.56.3.1 98098 1tfr 305 3.25e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1q18A 332 3.25e+01 c.55.1.7,c.55.1.7 104470,104471 1hruA 188 3.36e+01 1hruA d.115.1.1 40926 1z08A 170 3.49e+01 1ad1A 266 3.51e+01 1aj2 c.1.21.1 29668 1tyyA 339 3.52e+01 1wrmA 165 3.58e+01 2tysA 268 3.62e+01 2tysA c.1.2.4 28572 3bamA 213 3.70e+01 1bam c.52.1.3 33288 1bif 469 3.75e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1o22A 170 3.76e+01 d.238.1.1 86557 1lqaA 346 3.77e+01 c.1.7.1 84674 1ckaA 57 3.79e+01 1ckaA b.34.2.1 24459 2gtrA 261 3.81e+01 1ua4A 455 3.84e+01 c.72.1.3 99128 1vkyA 347 3.86e+01 e.53.1.1 108696 4tmkA 213 3.88e+01 5tmpA c.37.1.1 31930 1ek9A 428 3.91e+01 1ek9A f.5.1.1 43809 1lw7A 365 3.93e+01 c.26.1.3,c.37.1.1 74295,74296 1jhgA 101 3.93e+01 1jhgA a.4.12.1 19009 1t0iA 191 3.94e+01 c.23.5.4 106209 1qfjA 232 3.98e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 1aj2 282 3.98e+01 1aj2 c.1.21.1 29665 1s3aA 102 3.98e+01 1x6oA 174 4.04e+01 b.34.5.2,b.40.4.5 109493,109494 1z8gA 372 4.10e+01 1p8xA 344 4.15e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 2beiA 170 4.16e+01 1nw3A 416 4.29e+01 c.66.1.31 86288 2a5yB 549 4.29e+01 1t1gA 364 4.32e+01 c.41.1.2 106246 1nnwA 252 4.44e+01 d.159.1.5 80674 1u0mA 382 4.45e+01 c.95.1.2,c.95.1.2 107557,107558 2cmuA 342 4.54e+01 1ptmA 329 4.59e+01 c.77.1.3 95104 1w15A 153 4.59e+01 b.7.1.2 109041 1svdM 110 4.61e+01 1bqcA 302 4.64e+01 1bqcA c.1.8.3 28831 1id1A 153 4.68e+01 1id1A c.2.1.9 62286 1y88A 199 4.71e+01 1hywA 68 4.71e+01 1hywA d.186.1.1 61425 1acf 125 4.78e+01 3nul d.110.1.1 40882 1mqeA 207 4.80e+01 d.113.1.1 91394 1s7kA 182 4.89e+01 1wzaA 488 4.89e+01 1q52A 314 4.93e+01 c.14.1.3 95846 2b7aA 293 4.98e+01 1cz6A 25 4.99e+01 j.3.1.3 46072 1ae9A 179 5.01e+01 1ae9A d.163.1.1 42153 1o5zA 442 5.07e+01 c.59.1.2,c.72.2.2 92530,92531 1qopA 268 5.18e+01 2tysA c.1.2.4 28570 2gx9A 129 5.18e+01 1iyxA 432 5.27e+01 c.1.11.1,d.54.1.1 83815,83816 1w9cA 321 5.29e+01 1geeA 261 5.35e+01 c.2.1.2 90509 1cxqA 162 5.36e+01 1cxqA c.55.3.2 33621 1gcoA 261 5.37e+01 1ybvA c.2.1.2 29884 1h8gA 95 5.39e+01 b.109.1.1 65735 1epxA 370 5.44e+01 1fbaA c.1.10.1 29150 1ne9A 335 5.49e+01 d.108.1.4,d.108.1.4 91839,91840 1vg0A 650 5.50e+01 c.3.1.3,d.16.1.6 108596,108597 1mpxA 615 5.50e+01 b.18.1.13,c.69.1.21 85041,85042 1jlwA 219 5.54e+01 a.45.1.1,c.47.1.5 71741,71742 1zsoA 164 5.55e+01 5nul 138 5.58e+01 5nul c.23.5.1 31191 2a8eA 220 5.60e+01 1j0dA 341 5.79e+01 c.79.1.1 83902 1eo1A 124 5.79e+01 1eo1A c.55.5.1 33739 1yw5A 177 5.83e+01 1m2dA 110 5.83e+01 c.47.1.11 78476 1uj0A 62 5.91e+01 b.34.2.1 99449 1cq3A 233 6.01e+01 1cq3A b.27.1.1 23923 1woqA 267 6.02e+01 c.55.1.10,c.55.1.10 109462,109463 1bd3A 243 6.05e+01 1bd3A c.61.1.1 34098 1m4jA 142 6.09e+01 d.109.1.2 78602 2agaA 190 6.11e+01 1u04A 771 6.12e+01 b.34.14.1,c.55.3.10 107539,107540 1f37A 110 6.12e+01 1f37A c.47.1.11 33088 1nriA 306 6.15e+01 c.80.1.3 86123 1xt8A 292 6.21e+01 1zgkA 308 6.30e+01 1f2dA 341 6.35e+01 1f2dA c.79.1.1 35298 1i7qA 519 6.38e+01 1qdlA d.161.1.1 61901 1uyrA 737 6.45e+01 c.14.1.4,c.14.1.4 100188,100189 1ad4A 266 6.48e+01 1aj2 c.1.21.1 29670 1yadA 221 6.72e+01 1z2mA 155 6.75e+01 1e8yA 966 6.79e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 3il8 72 6.81e+01 1tvxA d.9.1.1 37356 1gggA 226 6.83e+01 1lst c.94.1.1 35817 1gt91 357 6.85e+01 1jz8A 1023 6.92e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1wnaA 131 6.92e+01 1wosA 364 6.95e+01 b.44.2.1,d.250.1.1 109468,109469 1qz9A 416 6.99e+01 c.67.1.3 96621 1dp0A 1023 6.99e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 1wdnA 226 7.13e+01 1lst c.94.1.1 35816 1p9qC 256 7.17e+01 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 2a4hA 126 7.25e+01 2ag4A 164 7.30e+01 1g12A 167 7.37e+01 1ge5A d.92.1.12 60193 1r5mA 425 7.52e+01 1u6dX 308 7.53e+01 1rq2A 382 7.70e+01 c.32.1.1,d.79.2.1 105048,105049 1ttwA 138 7.72e+01 d.198.1.1 107308 1z9zA 60 7.88e+01 1qxoA 388 7.89e+01 d.258.1.1 96539 1zr5A 214 8.01e+01 2fhzA 109 8.03e+01 1thm 279 8.08e+01 1gci c.41.1.1 32544 1qhtA 775 8.18e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1toaA 313 8.20e+01 1toaA c.92.2.2 35598 1wguA 136 8.24e+01 1ztpA 251 8.26e+01 1ydgA 211 8.31e+01 1m1hA 248 8.44e+01 b.114.1.1,d.58.42.1 78415,78416 1u7zA 226 8.49e+01 1puoA 170 8.52e+01 a.101.1.1,a.101.1.1 95134,95135 1m2oA 768 8.54e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1lam 484 8.57e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1jl0A 334 8.68e+01 1jenA d.156.1.1 63155 1xknA 355 8.73e+01 1x8qA 184 8.86e+01 1t95A 240 8.86e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1lnsA 763 8.91e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1esgA 213 8.91e+01 1bam c.52.1.3 33286