# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1udxA 416 1.25e+00 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2bkqA 212 1.93e+00 1mkp 144 3.32e+00 1vhrA c.45.1.1 32654 1i88A 389 3.35e+00 c.95.1.2,c.95.1.2 66070,66071 1gc5A 467 3.67e+00 1gc5A c.72.1.3 60429 1hq0A 295 3.90e+00 1hzgA d.194.1.1 61122 1y74A 57 4.01e+00 2h1tA 188 4.17e+00 1dc1A 323 4.47e+00 1dc1A c.52.1.11 33321 1jx4A 352 4.53e+00 d.240.1.1,e.8.1.7 90378,90379 2b49A 287 4.54e+00 2g8yA 385 4.58e+00 2dg5B 190 5.17e+00 2ap1A 327 5.66e+00 1y88A 199 7.73e+00 2bkrA 212 8.56e+00 1lehA 364 8.91e+00 1bw9A c.2.1.7,c.58.1.1 30268,33916 1r6wA 322 9.35e+00 c.1.11.2,d.54.1.1 97165,97166 1zxuA 217 9.45e+00 1fhuA 320 9.50e+00 1fhuA c.1.11.2,d.54.1.1 29234,38878 1rjdA 334 9.71e+00 c.66.1.37 97558 1ckaA 57 9.79e+00 1ckaA b.34.2.1 24459 1p90A 145 1.00e+01 c.55.5.2 94377 2az4A 429 1.13e+01 1p57A 114 1.15e+01 d.170.1.2 94125 2eu9A 355 1.18e+01 1gci 269 1.19e+01 1gci c.41.1.1 32503 1kjkA 64 1.19e+01 d.10.1.4 72613 1gw5S 142 1.21e+01 d.110.4.2 70633 1kcqA 104 1.23e+01 d.109.1.1 68449 1euvA 221 1.26e+01 1euvA d.3.1.7 37133 1wbpA 397 1.29e+01 2fm8A 135 1.30e+01 1nriA 306 1.32e+01 c.80.1.3 86123 1g0uG 252 1.32e+01 d.153.1.4 41952 1wrmA 165 1.44e+01 1xwyA 264 1.45e+01 5nul 138 1.48e+01 5nul c.23.5.1 31191 1uwzA 136 1.54e+01 c.97.1.1 108081 1vicA 262 1.56e+01 c.68.1.13 100756 1o2dA 371 1.59e+01 e.22.1.2 86591 1xt9A 212 1.65e+01 1q8yA 373 1.66e+01 d.144.1.7 96234 1uptC 170 1.68e+01 c.37.1.8 99769 2cayA 145 1.76e+01 1oltA 457 1.79e+01 c.1.28.2 93334 1ayoA 130 1.81e+01 1ayoA b.2.4.1 22431 1w15A 153 1.82e+01 b.7.1.2 109041 2g6bA 180 1.86e+01 1ofuX 119 1.90e+01 c.37.1.22 86976 2f7tA 227 1.91e+01 1u7zA 226 1.92e+01 1zxfA 155 1.96e+01 1h8gA 95 2.05e+01 b.109.1.1 65735 1cseE 274 2.10e+01 1gci c.41.1.1 32481 1on0A 158 2.11e+01 d.108.1.1 87095 1hw6A 278 2.12e+01 1frb c.1.7.1 61296 2a10A 125 2.15e+01 1wsrA 375 2.24e+01 1u5tC 202 2.27e+01 a.4.5.54,a.4.5.54 107688,107689 1yw5A 177 2.29e+01 1o5kA 306 2.31e+01 c.1.10.1 92504 1pme 380 2.32e+01 1hcl d.144.1.7 41653 1t0iA 191 2.39e+01 c.23.5.4 106209 1sup 275 2.46e+01 1gci c.41.1.1 32510 1vljA 407 2.46e+01 e.22.1.2 108832 1tyyA 339 2.49e+01 1lzlA 323 2.52e+01 c.69.1.2 78306 1uanA 227 2.55e+01 c.134.1.1 99135 1vl4A 447 2.62e+01 d.283.1.1 108718 1x6oA 174 2.72e+01 b.34.5.2,b.40.4.5 109493,109494 1txoA 237 2.73e+01 1yu6A 275 2.75e+01 1gklA 297 2.81e+01 c.69.1.2 65250 1ne9A 335 2.84e+01 d.108.1.4,d.108.1.4 91839,91840 1lba 146 2.85e+01 1lba d.118.1.1 41062 1lqaA 346 2.85e+01 c.1.7.1 84674 1sh7A 284 2.88e+01 1hruA 188 3.01e+01 1hruA d.115.1.1 40926 2tysA 268 3.07e+01 2tysA c.1.2.4 28572 1svdM 110 3.11e+01 1vbkA 307 3.12e+01 1lw6E 281 3.13e+01 c.41.1.1 74293 2gtrA 261 3.16e+01 1wb4A 297 3.17e+01 1k2yX 463 3.19e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1jm1A 204 3.20e+01 b.33.1.1 71745 1r0rE 274 3.25e+01 c.41.1.1 96735 1to2E 281 3.33e+01 1r31A 428 3.36e+01 d.58.20.1,d.179.1.1 96897,96898 1zrzA 364 3.37e+01 1p5dX 463 3.39e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1howA 373 3.41e+01 1hcl d.144.1.7 41679 3cla 213 3.48e+01 3cla c.43.1.1 32610 1z8gA 372 3.51e+01 1geeA 261 3.52e+01 c.2.1.2 90509 1gcoA 261 3.53e+01 1ybvA c.2.1.2 29884 1jl0A 334 3.54e+01 1jenA d.156.1.1 63155 1pch 88 3.56e+01 1ptf d.94.1.1 40564 1j9yA 385 3.65e+01 1j9yA c.1.8.3 62791 1odzA 386 3.71e+01 c.1.8.3 86889 1qopA 268 3.79e+01 2tysA c.1.2.4 28570 1mpxA 615 3.85e+01 b.18.1.13,c.69.1.21 85041,85042 4tmkA 213 3.86e+01 5tmpA c.37.1.1 31930 1noyA 388 3.88e+01 1clqA c.55.3.5 33713 1em8A 147 3.91e+01 c.128.1.1 90457 1tvoA 368 3.92e+01 1tiiD 99 4.02e+01 1tiiD b.40.2.1 24965 1d7uA 433 4.05e+01 2dkb c.67.1.4 34439 1qb5D 99 4.06e+01 b.40.2.1 88357 1ek9A 428 4.07e+01 1ek9A f.5.1.1 43809 1v52A 133 4.15e+01 1poiB 260 4.16e+01 1poiB c.124.1.3 34155 1pi1A 185 4.17e+01 a.29.7.1 94699 1h10A 125 4.19e+01 b.55.1.1 83446 1unqA 125 4.19e+01 b.55.1.1 107968 1ooeA 236 4.30e+01 c.2.1.2 87196 1uj0A 62 4.32e+01 b.34.2.1 99449 1z2mA 155 4.35e+01 1kfcA 268 4.41e+01 c.1.2.4 77371 1kid 203 4.42e+01 1derA c.8.5.1 30771 1s3aA 102 4.48e+01 1xteA 154 4.51e+01 1jhgA 101 4.64e+01 1jhgA a.4.12.1 19009 1aj2 282 4.67e+01 1aj2 c.1.21.1 29665 1w9cA 321 4.74e+01 1q0pA 223 4.80e+01 c.62.1.1 95507 1tuoA 464 4.83e+01 1ua4A 455 4.88e+01 c.72.1.3 99128 1z08A 170 4.92e+01 1yadA 221 4.94e+01 1wa3A 205 4.95e+01 1z9zA 60 4.96e+01 1xb4A 202 5.08e+01 2g2cA 167 5.12e+01 1vg0A 650 5.20e+01 c.3.1.3,d.16.1.6 108596,108597 1q18A 332 5.33e+01 c.55.1.7,c.55.1.7 104470,104471 1z6nA 167 5.40e+01 2fpeA 62 5.40e+01 1iyxA 432 5.43e+01 c.1.11.1,d.54.1.1 83815,83816 1nw3A 416 5.44e+01 c.66.1.31 86288 2cvbA 188 5.45e+01 1a05A 358 5.46e+01 1cnzA c.77.1.1 35059 1qxoA 388 5.52e+01 d.258.1.1 96539 1rybA 212 5.53e+01 c.56.3.1 98098 1pgs 314 5.58e+01 1pgs b.121.1.1,b.121.1.1 23653,23654 1jtkA 136 5.65e+01 c.97.1.1 71862 2aynA 404 5.65e+01 1p8xA 344 5.78e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1rypA 243 5.81e+01 1pmaA d.153.1.4 41932 1wdnA 226 5.94e+01 1lst c.94.1.1 35816 2b7aA 293 5.95e+01 1zsoA 164 6.18e+01 1ttwA 138 6.23e+01 d.198.1.1 107308 1sy7A 715 6.27e+01 1e8yA 966 6.30e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1k0fA 277 6.32e+01 c.92.2.2 71974 1bwzA 274 6.43e+01 1bwzA d.21.1.1,d.21.1.1 38337,38338 1tfr 305 6.57e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1hywA 68 6.61e+01 1hywA d.186.1.1 61425 2a5yB 549 6.69e+01 1vlwA 217 6.73e+01 c.1.10.1 108868 2beiA 170 6.76e+01 1wguA 136 6.91e+01 1uheA 97 6.95e+01 1zkrA 153 7.00e+01 1vpjA 192 7.04e+01 1xkzA 255 7.05e+01 1id1A 153 7.14e+01 1id1A c.2.1.9 62286 1bd3A 243 7.15e+01 1bd3A c.61.1.1 34098 1u0mA 382 7.17e+01 c.95.1.2,c.95.1.2 107557,107558 2b6nA 278 7.18e+01 1nrjB 218 7.21e+01 c.37.1.8 86125 1xa1A 255 7.23e+01 e.3.1.1 109529 1bdfA 235 7.23e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1lam 484 7.27e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1m4jA 142 7.36e+01 d.109.1.2 78602 1uptA 171 7.39e+01 c.37.1.8 99767 1acf 125 7.45e+01 3nul d.110.1.1 40882 1lvwA 295 7.60e+01 c.68.1.6 84723 1lnsA 763 7.62e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1huuA 90 7.62e+01 1huuA a.55.1.1 17897 1qz9A 416 7.66e+01 c.67.1.3 96621 1ge7A 167 7.73e+01 1ge5A d.92.1.12 60461 1ad1A 266 7.73e+01 1aj2 c.1.21.1 29668 1iw7C 1119 7.76e+01 e.29.1.1 71474 2govA 195 7.81e+01 2gkeA 274 7.81e+01 1hqz1 141 7.86e+01 1xtnA 120 7.91e+01 1qhtA 775 7.95e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1i7qA 519 7.97e+01 1qdlA d.161.1.1 61901 1woqA 267 7.98e+01 c.55.1.10,c.55.1.10 109462,109463 2djkA 133 8.00e+01 1o1zA 234 8.04e+01 c.1.18.3 86555 1t1gA 364 8.08e+01 c.41.1.2 106246 1jlwA 219 8.12e+01 a.45.1.1,c.47.1.5 71741,71742 2kinA 238 8.14e+01 1bg2 c.37.1.9 32190 1zo0A 126 8.16e+01 1bi5A 389 8.18e+01 1bi5A c.95.1.2,c.95.1.2 35985,35986 1c93A 265 8.22e+01 2ebn c.1.8.5 28998 1edt 271 8.23e+01 2ebn c.1.8.5 28993 1gqzA 274 8.23e+01 d.21.1.1,d.21.1.1 83311,83312 1x8qA 184 8.24e+01 1f2rI 100 8.39e+01 1c9fA d.15.2.1 37641 1ad4A 266 8.43e+01 1aj2 c.1.21.1 29670 2bjfA 329 8.45e+01 1yzbA 182 8.48e+01 1x24A 180 8.49e+01 1gt91 357 8.57e+01 2gx9A 129 8.66e+01 2ebn 289 8.70e+01 2ebn c.1.8.5 28990 1g12A 167 8.71e+01 1ge5A d.92.1.12 60193 1ydnA 295 8.75e+01 1k2eA 156 8.75e+01 d.113.1.1 72010 1yd0A 96 8.75e+01 1x72A 334 8.85e+01 d.126.1.6 109495 1xrtA 467 8.88e+01 2cfuA 658 8.88e+01 2d00A 109 8.90e+01