Best Alignments for T0342

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2g0qA/T0342-2g0qA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2g0qA/T0342-2g0qA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.8896e-072.31e-40
1vkbA/T0342-1vkbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vkbA/T0342-1vkbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9835e-051.32e-23 d.269.1.1
1v30A/T0342-1v30A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v30A/T0342-1v30A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.3579e-041.27e-23
1xhsA/T0342-1xhsA-t2k-global-adpstyle1.a2m 1xhsA/T0342-1xhsA-t2k-global-adpstyle1.al 2.6086e+005.38e-09
2bfgA/T0342-2bfgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bfgA/T0342-2bfgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4410e+001.12e-10
2bs9A/T0342-2bs9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bs9A/T0342-2bs9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.9779e+002.78e-09
1blxA/T0342-1blxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1blxA/T0342-1blxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5349e+001.39e-10 1hcl d.144.1.7
2ab5A/T0342-2ab5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ab5A/T0342-2ab5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.0476e+001.54e-09
1eejA/T0342-1eejA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1eejA/T0342-1eejA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.0700e+001.55e-01 1eejA c.47.1.9
d.17.3.1
1pvxA/T0342-1pvxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pvxA/T0342-1pvxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.6241e+004.63e-10 1axkA b.29.1.11

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001