# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g0qA 173 7.36e-05 1vkbA 161 4.40e-04 d.269.1.1 108643 1v30A 124 9.14e-04 1jroB 777 1.37e+00 d.41.1.1,d.133.1.1 67141,67142 2fgeA 995 2.98e+00 2g8yA 385 3.07e+00 1y2qA 143 3.69e+00 1pbwA 216 3.78e+00 1pbwA a.116.1.1 19103 1kqaA 203 3.98e+00 b.81.1.3 72868 1krrA 203 4.08e+00 b.81.1.3 72899 1sflA 238 4.80e+00 1vdxA 184 5.78e+00 1dysA 348 6.09e+00 1bvwA c.6.1.1 30669 1blxA 326 6.40e+00 1hcl d.144.1.7 41596 2d1eA 248 6.48e+00 1sfjA 238 6.91e+00 1awd 94 7.34e+00 1awd d.15.4.1 37673 1vgjA 184 7.88e+00 1f1eA 154 7.91e+00 a.22.1.2 64927 1offA 97 8.00e+00 d.15.4.1 86947 1vr6A 350 8.23e+00 1ru3A 732 9.33e+00 e.26.1.3 97835 1gjwA 637 1.05e+01 b.71.1.1,c.1.8.1 60582,60583 1g40A 244 1.06e+01 1e5gA g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1 44823,44824,44825,44826 1aj8A 371 1.10e+01 1aj8A a.103.1.1 18900 1i1gA 141 1.19e+01 a.4.5.32,d.58.4.2 65982,65983 1nnwA 252 1.21e+01 d.159.1.5 80674 1ogwA 76 1.27e+01 d.15.1.1 87001 1pah 308 1.28e+01 4pah d.178.1.1 42578 4pah 308 1.30e+01 4pah d.178.1.1 42576 1jj2A 239 1.36e+01 1rl2A b.34.5.3,b.40.4.5 63084,63085 1rfkA 98 1.39e+01 1gzsB 165 1.42e+01 a.168.1.1 76425 1ew4A 106 1.50e+01 1ew4A d.82.2.1 40023 1r9kA 172 1.53e+01 a.168.1.1 104869 2as9A 210 1.54e+01 2f6kA 307 1.61e+01 1s69A 124 1.62e+01 a.1.1.1 105305 1ubi 76 1.66e+01 1ubi d.15.1.1 37584 1gjuA 637 1.75e+01 b.71.1.1,c.1.8.1 60580,60581 1d3zA 76 1.76e+01 1ubi d.15.1.1 37592 1v37A 177 1.85e+01 1nz6A 101 1.85e+01 a.2.3.1 86441 1j8uA 325 1.91e+01 d.178.1.1 71611 1i2tA 61 1.94e+01 1i2tA a.144.1.1 61582 1z6nA 167 1.98e+01 1eexB 224 2.00e+01 1dioB c.51.3.1 33213 1wehA 171 2.12e+01 1idrA 136 2.24e+01 1dlyA a.1.1.1 62301 1dmwA 307 2.24e+01 4pah d.178.1.1 42580 1ubq 76 2.26e+01 1ubi d.15.1.1 37585 1tl2A 236 2.26e+01 1tl2A b.67.1.1 27541 1dioB 224 2.27e+01 1dioB c.51.3.1 33219 2booA 247 2.27e+01 1nbfD 76 2.43e+01 d.15.1.1 80390 3seb 238 2.47e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1o20A 427 2.52e+01 c.82.1.1 86556 1wraA 308 2.67e+01 2b18A 164 2.77e+01 1rt8A 513 2.78e+01 a.40.1.1 105095 1wmiA 90 2.93e+01 1a70 97 2.99e+01 1awd d.15.4.1 37678 2ff4A 388 3.18e+01 1h65A 270 3.23e+01 c.37.1.8 65640 1mwrA 646 3.44e+01 d.17.4.5,d.175.1.1,e.3.1.1 79586,79587,79588 1frd 98 3.48e+01 1awd d.15.4.1 37648 1ass 159 3.55e+01 1a6dA c.8.5.2 30818 1ee9A 320 3.65e+01 1ee9A c.2.1.7,c.58.1.2 30288,33936 1pzxA 289 3.66e+01 c.119.1.1 95484 2fkbA 180 3.79e+01 1ux8A 132 3.85e+01 1ustA 93 4.00e+01 a.4.5.13 99884 1jw2A 72 4.12e+01 a.23.5.1 67372 1fnmA 691 4.15e+01 1dar b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 25709,32144,37546,39302,39303 1vqoA 240 4.18e+01 1gtmA 419 4.22e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 2aexA 346 4.25e+01 1lwdA 413 4.48e+01 c.77.1.1 78265 1se4 239 4.50e+01 3seb b.40.2.2,d.15.6.1 25187,37776 1u6mA 199 4.56e+01 1d5mC 239 4.68e+01 3seb b.40.2.2,d.15.6.1 25185,37774 1hqvA 191 4.79e+01 1hqvA a.39.1.8 61160 2bs9A 503 4.84e+01 1edzA 320 4.85e+01 1ee9A c.2.1.7,c.58.1.2 30287,33935 1r7jA 95 4.91e+01 a.4.5.49 104836 1luzA 88 4.95e+01 b.40.4.5 74271 2cyeA 133 5.05e+01 1zy1B 197 5.09e+01 1gowA 489 5.12e+01 1qvbA c.1.8.4 28981 1jf0A 195 5.13e+01 1ej3A a.39.1.5 62926 1i8fA 81 5.19e+01 1i8fA b.38.1.1 61959 1vqqA 646 5.20e+01 1kxgA 152 5.22e+01 b.22.1.1 73145 1gjsA 65 5.23e+01 1gab a.8.1.2 60578 2aw4Q 117 5.31e+01 1eejA 216 5.44e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1f0iA 504 5.50e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1v9nA 360 5.53e+01 1so7A 382 5.55e+01 2bfgA 503 5.58e+01 1lo7A 141 5.63e+01 d.38.1.1 74144 1eia 207 5.70e+01 1eia a.28.3.1,a.73.1.1 16951,18331 1el4A 195 5.94e+01 1ej3A a.39.1.5 59453 1wt4A 73 6.05e+01 1vbkA 307 6.06e+01 2g7gA 213 6.08e+01 1bvqA 141 6.11e+01 1bvqA d.38.1.1 38542 1om2A 95 6.12e+01 1om2A a.23.4.1 16520 1j4aA 333 6.19e+01 c.2.1.4,c.23.12.1 71502,71503 1wgwA 99 6.20e+01 1e5gA 120 6.20e+01 1e5gA g.18.1.1,g.18.1.1 44843,44844 1pq4A 291 6.25e+01 c.92.2.2 94995 2b1xA 470 6.40e+01 1v0wA 506 6.51e+01 d.136.1.2,d.136.1.2 108220,108221 1aoa 275 6.56e+01 1aoa a.40.1.1,a.40.1.1 17396,17397 1mwsA 646 6.59e+01 d.17.4.5,d.175.1.1,e.3.1.1 79592,79593,79594 1jf2A 195 6.70e+01 1ej3A a.39.1.5 62930 1g9lA 144 6.77e+01 1g9lA a.144.1.1 60399 1f6yA 262 6.78e+01 1f6yA c.1.21.2 29673 1diiC 80 6.89e+01 1diiC a.3.1.1 15925 1wveC 80 7.00e+01 1v0aA 178 7.09e+01 1gwuA 309 7.09e+01 a.93.1.1 83351 1rtxA 123 7.11e+01 a.1.1.1 97827 1qd1A 325 7.13e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1dar 691 7.16e+01 1dar b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1 25707,32142,37547,39300 1f3aA 222 7.32e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1q3iA 214 7.32e+01 d.220.1.1 104524 2ez6A 221 7.34e+01 2fwkA 121 7.44e+01 1ghj 79 7.49e+01 1ghj b.84.1.1 28232 1amz 435 7.49e+01 1csh a.103.1.1 18884 1fnuA 221 7.52e+01 3seb b.40.2.2,d.15.6.1 25212,37801 2gfgA 193 7.57e+01 1n81A 186 7.60e+01 a.185.1.1 85388 1ilyA 90 7.62e+01 c.55.4.1 71245 1ffkB 338 7.71e+01 1ffkB b.43.3.2 25719 2bwrA 401 7.73e+01 1s1pA 331 7.81e+01 c.1.7.1 98350 1rzmA 338 7.88e+01 c.1.10.4 105137 1oroA 213 7.91e+01 1opr c.61.1.1 34093 1asx 159 7.93e+01 1a6dA c.8.5.2 30821 2fd5A 180 7.93e+01 1q08A 99 7.94e+01 a.6.1.3 95497 2atjA 308 8.09e+01 1bgp a.93.1.1 18675 1tr8A 102 8.33e+01 1uxzA 131 8.37e+01 b.18.1.10 100170 1r9dA 787 8.43e+01 c.7.1.1 104865 1qagA 226 8.51e+01 1qagA a.40.1.1,a.40.1.1 17400,17401 1emy 153 8.57e+01 1a6m a.1.1.2 15204 1z7mA 344 8.57e+01 7atjA 308 8.59e+01 1bgp a.93.1.1 18673 2a33A 215 8.62e+01 2bibA 547 8.67e+01 3kar 346 8.76e+01 1bg2 c.37.1.9 32198 1odkA 235 8.81e+01 c.56.2.1 86863 1i18A 97 8.81e+01 b.43.4.3 61520 1aun 208 8.81e+01 1thv b.25.1.1 23900 1ho8A 480 8.85e+01 1ho8A a.118.1.9 61107 1bc5A 269 8.86e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1pvgA 418 8.97e+01 d.14.1.3,d.122.1.2 95161,95162