# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g0qA 173 4.27e-05 1vkbA 161 1.17e-04 d.269.1.1 108643 1v30A 124 1.01e-02 1bpe 335 9.19e-01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 18076,75815,75816 1jroB 777 1.43e+00 d.41.1.1,d.133.1.1 67141,67142 1blxA 326 3.22e+00 1hcl d.144.1.7 41596 2ez6A 221 3.32e+00 1aoa 275 3.66e+00 1aoa a.40.1.1,a.40.1.1 17396,17397 1sflA 238 4.56e+00 1nz6A 101 5.81e+00 a.2.3.1 86441 1rt8A 513 5.97e+00 a.40.1.1 105095 1u6mA 199 6.22e+00 1sfjA 238 8.61e+00 1vr6A 350 9.90e+00 2bs9A 503 1.03e+01 1nb8A 353 1.23e+01 d.3.1.9 80385 2bfgA 503 1.50e+01 2bghA 421 1.50e+01 1wveC 80 1.62e+01 1kg0C 136 1.62e+01 d.169.1.1 72445 1oasA 322 1.67e+01 1oasA c.79.1.1 35293 1vdxA 184 1.73e+01 1j4aA 333 1.77e+01 c.2.1.4,c.23.12.1 71502,71503 1nbfA 353 1.79e+01 d.3.1.9 80387 1gzsB 165 1.84e+01 a.168.1.1 76425 1vgjA 184 1.86e+01 1pzxA 289 1.93e+01 c.119.1.1 95484 1v0aA 178 1.97e+01 1emy 153 1.98e+01 1a6m a.1.1.2 15204 1y2qA 143 2.07e+01 1diiC 80 2.20e+01 1diiC a.3.1.1 15925 1qttA 117 2.50e+01 1a1x b.63.1.1 27516 1jf0A 195 2.50e+01 1ej3A a.39.1.5 62926 2g8yA 385 2.52e+01 2booA 247 2.67e+01 1fcjA 322 2.91e+01 1oasA c.79.1.1 35289 1a1x 108 2.96e+01 1a1x b.63.1.1 27514 1wvcA 259 3.14e+01 1offA 97 3.17e+01 d.15.4.1 86947 1fiqC 763 3.37e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 1lkcA 364 3.43e+01 c.67.1.1 73978 1q3iA 214 3.50e+01 d.220.1.1 104524 1gjwA 637 3.58e+01 b.71.1.1,c.1.8.1 60582,60583 1d5mC 239 3.67e+01 3seb b.40.2.2,d.15.6.1 25185,37774 1awd 94 3.85e+01 1awd d.15.4.1 37673 1n3lA 372 3.91e+01 c.26.1.1 79966 1gtmA 419 3.95e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 5pal 109 4.03e+01 1a75A a.39.1.4 17215 1lc5A 364 4.03e+01 c.67.1.1 73827 1gjuA 637 4.11e+01 b.71.1.1,c.1.8.1 60580,60581 1tzlA 622 4.20e+01 1zxfA 155 4.23e+01 1qagA 226 4.24e+01 1qagA a.40.1.1,a.40.1.1 17400,17401 1eejA 216 4.32e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1opr 213 4.35e+01 1opr c.61.1.1 34091 1wy7A 207 4.48e+01 1nnwA 252 4.60e+01 d.159.1.5 80674 1edzA 320 4.62e+01 1ee9A c.2.1.7,c.58.1.2 30287,33935 1oroA 213 4.63e+01 1opr c.61.1.1 34093 4bcl 366 4.64e+01 4bcl b.75.1.1 27968 1n7zA 334 4.65e+01 b.127.1.1 85380 2fgeA 995 4.78e+01 1pzwA 80 4.80e+01 g.39.1.10 95483 1v37A 177 5.02e+01 1tt0A 623 5.02e+01 1qwtA 255 5.50e+01 b.26.1.3 96501 1ee9A 320 5.58e+01 1ee9A c.2.1.7,c.58.1.2 30288,33936 1qrjB 199 5.67e+01 1qrjB a.28.3.1 16952 1qfhA 212 5.70e+01 1qfhA b.1.18.10,b.1.18.10 21893,21894 1rfkA 98 5.83e+01 1a70 97 5.86e+01 1awd d.15.4.1 37678 1pms 136 5.86e+01 1awe b.55.1.1 26966 1nbfD 76 5.99e+01 d.15.1.1 80390 1oaiA 59 6.09e+01 a.5.2.3 81255 1dysA 348 6.51e+01 1bvwA c.6.1.1 30669 1d3zA 76 6.59e+01 1ubi d.15.1.1 37592 1u09A 476 6.63e+01 e.8.1.4 107545 1v25A 541 6.64e+01 e.23.1.1 108275 2b9dA 52 6.66e+01 1kotA 119 6.80e+01 d.15.1.3 68732 2d1eA 248 6.83e+01 1tl2A 236 6.91e+01 1tl2A b.67.1.1 27541 1se4 239 6.92e+01 3seb b.40.2.2,d.15.6.1 25187,37776 2cy5A 140 6.93e+01 1z4rA 168 6.99e+01 2fkbA 180 7.05e+01 1dt6A 473 7.06e+01 1dt6A a.104.1.1 18977 1dar 691 7.16e+01 1dar b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1 25707,32142,37547,39300 1fo4A 1332 7.16e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 17910,37695,38586,40227,41416,41758 1ubq 76 7.22e+01 1ubi d.15.1.1 37585 1dbhA 354 7.26e+01 1awe a.87.1.1,b.55.1.1 18514,26967 3seb 238 7.28e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1g4mA 393 7.35e+01 b.1.18.11,b.1.18.11 65143,65144 1fnuA 221 7.61e+01 3seb b.40.2.2,d.15.6.1 25212,37801 1ux8A 132 7.68e+01 1klpA 115 7.72e+01 a.28.1.1 72721 1ubi 76 7.86e+01 1ubi d.15.1.1 37584 1v95A 130 7.93e+01 c.51.1.1 108435 1so7A 382 8.10e+01 1h6gA 256 8.16e+01 1h6gA a.24.9.1,a.24.9.1 60669,60670 2cs2A 134 8.33e+01 1uj2A 252 8.37e+01 c.37.1.6 99452 1ir3A 306 8.45e+01 1fmk d.144.1.7 41702 1pbwA 216 8.54e+01 1pbwA a.116.1.1 19103 1g40A 244 8.61e+01 1e5gA g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1 44823,44824,44825,44826 1a4iA 301 8.74e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1yp5A 58 8.84e+01 1f1eA 154 8.92e+01 a.22.1.2 64927 2bdwA 362 8.93e+01