Best Alignments for T0342

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1vkbA/T0342-1vkbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vkbA/T0342-1vkbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.2829e-155.46e-50 d.269.1.1
2g0qA/T0342-2g0qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2g0qA/T0342-2g0qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5456e-141.25e-57
1v30A/T0342-1v30A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v30A/T0342-1v30A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6716e-091.31e-36
1cjxA/T0342-1cjxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1cjxA/T0342-1cjxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2401e+009.91e-08 1cjxA d.32.1.3
d.32.1.3
1eejA/T0342-1eejA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1eejA/T0342-1eejA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2048e+001.65e-02 1eejA c.47.1.9
d.17.3.1
1t5hX/T0342-1t5hX-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t5hX/T0342-1t5hX-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4281e+002.04e-07 e.23.1.1
2fh7A/T0342-2fh7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fh7A/T0342-2fh7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.5987e+005.67e-13
2bzlA/T0342-2bzlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bzlA/T0342-2bzlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6256e+001.52e-12
2f7fA/T0342-2f7fA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f7fA/T0342-2f7fA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.5193e+009.34e-11
1yqgA/T0342-1yqgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yqgA/T0342-1yqgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.0047e+001.63e-14

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001