# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vkbA 161 1.26e-12 d.269.1.1 108643 2g0qA 173 6.00e-12 1v30A 124 2.94e-08 1t5hX 504 1.32e-01 e.23.1.1 106449 1cjxA 357 1.69e-01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1eejA 216 6.73e-01 1eejA c.47.1.9,d.17.3.1 33057,38071 1tzzA 392 8.11e-01 1ln1A 214 1.22e+00 d.129.3.2 74038 1r61A 207 1.69e+00 c.8.8.1 97138 1pg4A 652 2.67e+00 e.23.1.1 88067 2foyA 260 3.00e+00 1wu7A 434 3.04e+00 1s9jA 341 3.06e+00 1hw7A 255 3.18e+00 1i7fA d.193.1.1 61297 1dgfA 497 3.19e+00 1cf9A e.5.1.1 42782 2fl7A 232 3.32e+00 1g5cA 170 3.72e+00 1g5cA c.53.2.1 60264 1lwdA 413 3.82e+00 c.77.1.1 78265 1b25A 619 3.93e+00 1b25A a.110.1.1,d.152.1.1 19044,41796 2f71A 298 4.04e+00 1j2gA 319 4.21e+00 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1svvA 359 4.22e+00 c.67.1.1 106054 1woqA 267 4.37e+00 c.55.1.10,c.55.1.10 109462,109463 1u9tA 354 4.71e+00 1fnd 314 4.97e+00 1fnc b.43.4.2,c.25.1.1 25626,31516 1vkkA 154 5.23e+00 d.109.1.2 108669 2fh7A 595 5.56e+00 1ukkA 142 5.56e+00 d.227.1.1 99491 1u3eM 174 5.64e+00 d.4.1.3,d.285.1.1 107640,107641 2aexA 346 6.03e+00 1g4wR 383 6.38e+00 1g4uS a.24.11.1,c.45.1.2 16644,32692 2a6hC 1119 6.43e+00 1bx1A 314 6.49e+00 1fnc b.43.4.2,c.25.1.1 25629,31519 1ryiA 382 6.54e+00 1qhtA 775 6.88e+00 1tgoA c.55.3.5,e.8.1.1 33722,43011 1pbwA 216 6.92e+00 1pbwA a.116.1.1 19103 1yemA 179 7.01e+00 1iu8A 206 7.20e+00 c.56.4.1 71436 2a19A 175 7.20e+00 1pa1A 310 7.25e+00 c.45.1.2 94404 2fgeA 995 7.87e+00 1vbvA 105 8.29e+00 1vzyA 291 8.50e+00 1j0dA 341 8.57e+00 c.79.1.1 83902 1inlA 296 8.66e+00 c.66.1.17 66220 1lugA 259 8.75e+00 b.74.1.1 91127 1nvmB 312 8.86e+00 c.2.1.3,d.81.1.1 86251,86252 1fljA 260 9.01e+00 2cba b.74.1.1 27954 1h2kA 349 9.58e+00 b.82.2.6 76572 1wdtA 665 9.74e+00 2ghjA 118 9.85e+00 1idaA 99 1.04e+01 1fmb b.50.1.1 26715 1bvyF 191 1.04e+01 1bvyF c.23.5.1 31207 2fp8A 322 1.04e+01 1wdnA 226 1.05e+01 1lst c.94.1.1 35816 1y2qA 143 1.07e+01 1zz1A 369 1.07e+01 1uxzA 131 1.14e+01 b.18.1.10 100170 2d1sA 548 1.15e+01 1fcdA 401 1.16e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1p32A 209 1.20e+01 1p32A d.25.1.1 38379 1n9lA 109 1.22e+01 d.110.3.6 85468 1sgwA 214 1.24e+01 c.37.1.12 105541 8rucI 123 1.28e+01 1rboC d.73.1.1 39629 1ta8A 332 1.33e+01 1g8aA 227 1.33e+01 c.66.1.3 90506 2f7fA 494 1.35e+01 2bwnA 401 1.43e+01 1j1lA 290 1.44e+01 b.82.1.12 90766 2b3gA 123 1.49e+01 1uz5A 402 1.49e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1mdbA 539 1.50e+01 e.23.1.1 79008 2bmoA 447 1.52e+01 1yrtA 364 1.56e+01 1h2wA 710 1.56e+01 b.69.7.1,c.69.1.4 76596,76597 2as0A 396 1.56e+01 1m4jA 142 1.59e+01 d.109.1.2 78602 2pia 321 1.60e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1zupA 315 1.60e+01 1wxxA 382 1.63e+01 1zsoA 164 1.65e+01 1vioA 243 1.66e+01 d.265.1.3,d.66.1.5 100762,100763 2bv5A 282 1.70e+01 1tafB 70 1.71e+01 1tafB a.22.1.3 16482 1yge 839 1.73e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1zsqA 528 1.76e+01 1xuvA 178 1.77e+01 1q7zA 566 1.80e+01 c.1.21.2,c.1.26.1 96090,96091 1juvA 193 1.80e+01 c.71.1.1 90912 2bvcA 486 1.82e+01 1a2zA 220 1.90e+01 1a2zA c.56.4.1 33794 1ekeA 230 1.94e+01 1ekeA c.55.3.1 33572 1kl9A 182 1.95e+01 b.40.4.5 72681 1gz8A 299 1.98e+01 d.144.1.7 83405 1b7yA 350 1.99e+01 1pysA d.104.1.1 40776 1v9nA 360 2.05e+01 1qqrA 138 2.06e+01 1bmlC d.15.5.1 37721 1z94A 147 2.12e+01 2bjiA 277 2.14e+01 1yqgA 263 2.15e+01 1kwgA 645 2.16e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1mg7A 417 2.17e+01 d.14.1.6,d.58.26.6 84954,84955 1v1aA 309 2.20e+01 c.72.1.1 100249 2ex5A 207 2.22e+01 1vg8A 207 2.28e+01 c.37.1.8 108606 1uocA 289 2.34e+01 c.55.3.9 99686 1qfhA 212 2.37e+01 1qfhA b.1.18.10,b.1.18.10 21893,21894 1pyaB 228 2.38e+01 1pyaB 1zvnA 99 2.39e+01 1iqzA 81 2.42e+01 d.58.1.4 66281 1pp7U 131 2.43e+01 a.4.5.44 94973 1wduA 245 2.44e+01 d.151.1.1 109286 1u8fO 335 2.47e+01 2c0zA 216 2.51e+01 1ts9A 102 2.52e+01 4fiv 113 2.61e+01 1fmb b.50.1.1 26762 1k32A 1045 2.64e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1x6oA 174 2.67e+01 b.34.5.2,b.40.4.5 109493,109494 2beiA 170 2.70e+01 1ww7A 160 2.74e+01 1yx1A 264 2.75e+01 1gadO 330 2.77e+01 1dssG c.2.1.3,d.81.1.1 29950,39865 1guzA 310 2.81e+01 c.2.1.5,d.162.1.1 65586,65587 1nepA 130 2.85e+01 b.1.18.7 80440 1oaoA 674 2.86e+01 e.26.1.2 86744 1f39A 101 2.93e+01 1umuA b.87.1.1 28386 1utg 70 2.97e+01 1utg a.101.1.1 18813 1vjhA 122 3.07e+01 d.129.3.1 100811 1bs0A 384 3.08e+01 1bs0A c.67.1.4 34490 1u1iA 392 3.11e+01 c.2.1.3,d.81.1.3 107582,107583 2b8wA 328 3.12e+01 1y07A 128 3.15e+01 1i39A 225 3.18e+01 1ekeA c.55.3.1 61585 1txnA 328 3.19e+01 2cbuA 468 3.19e+01 1umwA 237 3.21e+01 d.223.1.2,d.223.1.2 99631,99632 2a74A 643 3.24e+01 1e8gA 560 3.24e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1z02A 446 3.27e+01 1zxkA 98 3.27e+01 2bvfA 459 3.31e+01 2gl5A 410 3.37e+01 1h8eA 510 3.38e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1kt6A 183 3.50e+01 b.60.1.1 84466 1jf9A 408 3.56e+01 1c0nA c.67.1.3 62931 1jfuA 186 3.57e+01 c.47.1.10 62940 1jihA 531 3.58e+01 d.240.1.1,e.8.1.7 90374,90375 2c5qA 240 3.61e+01 1f1xA 322 3.63e+01 d.32.1.3,d.32.1.3 83208,83209 1x89A 178 3.67e+01 1fm4A 159 3.75e+01 1bv1 d.129.3.1 76186 1eerB 227 3.76e+01 1eerB b.1.2.1,b.1.2.1 22011,22012 1px5A 349 3.79e+01 a.160.1.2,d.218.1.6 95277,95278 1ywnA 316 3.79e+01 2eucA 130 3.83e+01 1rm6A 769 3.83e+01 1iybA 208 3.83e+01 d.124.1.1 90720 1lldA 319 3.88e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1wveC 80 3.89e+01 1bfg 146 3.92e+01 1bfg b.42.1.1 25485 1pgl2 370 3.92e+01 1kgdA 180 4.08e+01 c.37.1.1 68582 1krhA 338 4.12e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1e25A 282 4.14e+01 1e25A e.3.1.1 42731 1aj8A 371 4.15e+01 1aj8A a.103.1.1 18900 1r9hA 135 4.17e+01 d.26.1.1 97260 1w8oA 601 4.20e+01 1t0bA 252 4.23e+01 c.23.16.6 106199 1nxmA 197 4.23e+01 b.82.1.1 86385 1yqzA 438 4.28e+01 1fc4A 401 4.30e+01 1bs0A c.67.1.4 59760 1c7qA 445 4.33e+01 2pgi c.80.1.2 35307 1fvgA 199 4.45e+01 1fvaA d.58.28.1 39408 1dkzA 219 4.47e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1yoxA 250 4.49e+01 1h3lA 87 4.50e+01 a.177.1.1 76639 1zx4A 192 4.52e+01 1ghpA 258 4.56e+01 1btl e.3.1.1 60520 1heiA 451 4.57e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1dpe 507 4.59e+01 1dpe c.94.1.1 35799 1yy6A 155 4.70e+01 2fojA 155 4.70e+01 1ww9A 392 4.88e+01 1wpoA 256 5.00e+01 1lay b.57.1.1 27012 1obbA 480 5.01e+01 c.2.1.5,d.162.1.2 86760,86761 1vjeA 166 5.07e+01 d.185.1.2 100807 1wwtA 88 5.11e+01 2ck3A 510 5.14e+01 1gk8A 475 5.15e+01 c.1.14.1,d.58.9.1 65234,65235 1k66A 149 5.18e+01 c.23.1.1 90941 1bazA 53 5.19e+01 1bazA a.43.1.1 17421 1g1tA 157 5.19e+01 d.169.1.1,g.3.11.1 65104,65105 2cz2A 223 5.21e+01 1qwtA 255 5.22e+01 b.26.1.3 96501 1od3A 168 5.23e+01 b.18.1.10 86825 1y7yA 74 5.25e+01 1pzgA 331 5.29e+01 c.2.1.5,d.162.1.1 95425,95426 1mrzA 293 5.30e+01 b.43.5.1,c.26.1.3 91452,91453 1tc5A 194 5.31e+01 c.110.1.1 106752 1pv0A 46 5.33e+01 a.2.12.1 95141 2gujA 155 5.38e+01 1uc2A 481 5.48e+01 d.261.1.1 99161 1bb9 115 5.49e+01 1bb9 b.34.2.1 24554 1xffA 240 5.50e+01 d.153.1.1 109580 2d2eA 250 5.51e+01 1i9zA 347 5.51e+01 1i9yA d.151.1.2 62102 1ec7A 446 5.58e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1v54E 109 5.65e+01 a.118.11.1 100326 1ad2 228 5.65e+01 1ad2 e.24.1.1 43353 1up7A 417 5.66e+01 1p2hA 571 5.71e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1lshA 1056 5.73e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2cwsA 237 5.75e+01 1nm8A 616 5.80e+01 c.43.1.3,c.43.1.3 85872,85873 1n08A 163 5.81e+01 b.43.5.1 79730 2bjdA 101 5.83e+01 2gefA 217 5.84e+01 1vkmA 297 5.86e+01 c.138.1.1 108670 1em2A 229 5.90e+01 1em2A d.129.3.2 41321 1h4vB 421 5.94e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 2aq2B 237 5.95e+01 1ve1A 304 6.03e+01 1eceA 358 6.03e+01 1eceA c.1.8.3 28813 1qxoA 388 6.03e+01 d.258.1.1 96539 1hzoA 271 6.09e+01 e.3.1.1 71092 2f96A 224 6.12e+01 2bkkA 264 6.12e+01 2ffsA 157 6.19e+01 1uekA 275 6.19e+01 d.14.1.5,d.58.26.5 88483,88484 1v0aA 178 6.20e+01 1hs6A 611 6.25e+01 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1vjuA 309 6.26e+01 d.248.1.1 100835 1wddS 128 6.26e+01 1a8o 70 6.27e+01 1a8o a.28.3.1 16953 1f9yA 158 6.32e+01 d.58.30.1 83249 1qe5A 266 6.32e+01 1b8oA c.56.2.1 33784 1bvoA 175 6.39e+01 1a3qA b.2.5.3 22457 1id1A 153 6.41e+01 1id1A c.2.1.9 62286 1k3iA 656 6.42e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1uxxX 133 6.44e+01 b.18.1.10 100169 1uyrA 737 6.44e+01 c.14.1.4,c.14.1.4 100188,100189 1bqk 124 6.53e+01 1bqk b.6.1.1 22889 1tu1A 148 6.56e+01 d.107.1.3 107316 1x9pA 523 6.57e+01 1wo8A 126 6.58e+01 2d9rA 104 6.58e+01 1nqzA 194 6.59e+01 d.113.1.1 86077 2fb7A 95 6.59e+01 1y7wA 291 6.59e+01 2bzlA 325 6.65e+01 1h6dA 433 6.79e+01 c.2.1.3,d.81.1.5 65656,65657 2gqrA 237 6.86e+01 1lrzA 426 6.86e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1gppA 237 7.00e+01 b.86.1.2 76262 1aozA 552 7.13e+01 1aozA b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1i8dA 213 7.13e+01 b.43.4.3,b.43.4.3 61953,61954 1h4gA 207 7.13e+01 b.29.1.11 70863 1a78A 134 7.16e+01 1c1lA b.29.1.3 24212 1t6nA 220 7.20e+01 c.37.1.19 106576 1ryp1 222 7.21e+01 1ryp1 1snzA 344 7.23e+01 b.30.5.4 98930 1uacL 107 7.25e+01 b.1.1.1 99133 1twfK 120 7.28e+01 1m3yA 413 7.29e+01 b.121.2.3,b.121.2.3 78579,78580 1eexG 173 7.29e+01 1dioG a.23.2.1 16490 1ckmA 330 7.31e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1li4A 432 7.33e+01 c.2.1.4,c.23.12.3 84616,84617 1n62B 809 7.39e+01 d.41.1.1,d.133.1.1 80092,80093 1nrlA 316 7.45e+01 a.123.1.1 92091 1oxdA 227 7.50e+01 d.22.1.1 93687 2f4qA 346 7.53e+01 1io2A 213 7.53e+01 1ekeA c.55.3.1 62612 1yb5A 351 7.54e+01 1zanL 214 7.54e+01 1zgoA 223 7.57e+01 1gwyA 175 7.71e+01 b.97.1.1 83356 1i2aA 219 7.73e+01 e.24.1.1 90660 1vj1A 363 7.76e+01 b.35.1.2,c.2.1.1 100794,100795 1pg6A 243 7.76e+01 b.82.5.2 94673 1l1lA 739 7.85e+01 c.7.1.4 73470 2etgA 296 7.90e+01 1v3vA 333 7.90e+01 b.35.1.2,c.2.1.1 108345,108346 2fymA 431 7.91e+01 1g3qA 237 7.93e+01 1hyqA c.37.1.10 60237 1oshA 232 7.96e+01 a.123.1.1 93496 1yljA 263 7.99e+01 1l3lA 234 8.01e+01 a.4.6.2,d.110.5.1 73541,73542 1c7gA 456 8.02e+01 c.67.1.2 90415 1mjhA 162 8.04e+01 1mjhA c.26.2.4 31639 1zndA 174 8.04e+01 2awkA 228 8.08e+01 1nd4A 264 8.08e+01 d.144.1.6 91815 1kngA 156 8.10e+01 c.47.1.10 72777 1tzjA 338 8.11e+01 2azpA 318 8.13e+01 1uliA 460 8.18e+01 b.33.1.2,d.129.3.3 107921,107922 1kmvA 186 8.24e+01 c.71.1.1 72757 1rxwA 336 8.29e+01 a.60.7.1,c.120.1.2 98059,98060 1oohA 126 8.30e+01 a.39.2.1 93383 2b49A 287 8.34e+01 1rreA 200 8.43e+01 d.14.1.10 97791 1ecfA 504 8.45e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1ukuA 102 8.49e+01 d.58.5.2 99533 1hfuA 503 8.49e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2f02A 323 8.51e+01 1n7zA 334 8.62e+01 b.127.1.1 85380 1yspA 181 8.65e+01 1vd3A 217 8.70e+01 1p5zB 263 8.73e+01 c.37.1.1 87815 2dg5A 366 8.74e+01 1qy1A 174 8.75e+01 b.60.1.1 96568 2ew0A 192 8.78e+01 1mgtA 174 8.80e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1qopA 268 8.82e+01 2tysA c.1.2.4 28570 1ihkA 174 8.84e+01 1bfg b.42.1.1 62384 2ajgA 196 8.86e+01 1j99A 293 9.00e+01 c.37.1.5 71618