Best Alignments for T0342

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2g0qA/T0342-2g0qA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2g0qA/T0342-2g0qA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7094e-159.26e-61
1vkbA/T0342-1vkbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vkbA/T0342-1vkbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1684e-132.03e-49 d.269.1.1
1v30A/T0342-1v30A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v30A/T0342-1v30A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0363e-082.79e-34
1xhsA/T0342-1xhsA-t04-global-adpstyle1.a2m 1xhsA/T0342-1xhsA-t04-global-adpstyle1.al 4.5786e-064.45e-21
1jroB/T0342-1jroB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jroB/T0342-1jroB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7500e+006.74e-03 d.41.1.1
d.133.1.1
2bv5A/T0342-2bv5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bv5A/T0342-2bv5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3175e+001.64e-17
1jlnA/T0342-1jlnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jlnA/T0342-1jlnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4632e+009.93e-19 1pty c.45.1.2
2bijA/T0342-2bijA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bijA/T0342-2bijA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4737e+006.69e-20
2fh7A/T0342-2fh7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fh7A/T0342-2fh7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7225e+008.60e-14
2bzlA/T0342-2bzlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bzlA/T0342-2bzlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8423e+006.27e-17

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001