# List of top-scoring protein chains for T0342.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vkbA 161 3.19e-18 d.269.1.1 108643 2g0qA 173 5.89e-16 1xhsA 121 1.29e-13 1v30A 124 4.85e-09 1zba3 221 1.46e-01 1yyeA 268 6.68e-01 1qkmA 255 7.21e-01 3erdA a.123.1.1 19309 1l2jA 271 9.66e-01 a.123.1.1 73505 1u3rA 241 1.16e+00 1ndeA 255 1.23e+00 a.123.1.1 80415 1x76A 240 1.31e+00 1jroB 777 1.75e+00 d.41.1.1,d.133.1.1 67141,67142 1h6nA 484 1.83e+00 e.5.1.1 90623 1qknA 255 1.84e+00 3erdA a.123.1.1 19310 1vprA 374 1.97e+00 1t91A 207 2.31e+00 1vg1A 185 2.83e+00 c.37.1.8 108599 1qqp3 220 2.88e+00 1qqp3 1zafA 238 2.98e+00 1vg8A 207 3.22e+00 c.37.1.8 108606 1h7kA 483 4.12e+00 e.5.1.1 90624 1ynfA 458 4.68e+00 2ftzA 284 5.04e+00 2g2dA 193 5.65e+00 2foyA 260 6.00e+00 1crm 260 6.53e+00 2cba b.74.1.1 27816 1jv0A 260 6.59e+00 b.74.1.1 63303 1bas 154 6.63e+00 1bfg b.42.1.1 25488 1iilA 155 6.67e+00 1bfg b.42.1.1 62433 1yniA 458 6.74e+00 2cab 261 6.84e+00 2cba b.74.1.1 27906 1bfb 147 7.20e+00 1bfg b.42.1.1 25490 1bfg 146 7.22e+00 1bfg b.42.1.1 25485 1m85A 484 8.11e+00 e.5.1.1 74578 1gxfA 492 8.65e+00 c.3.1.5,c.3.1.5,d.87.1.1 90527,90528,90529 1bla 155 8.77e+00 1bfg b.42.1.1 25502 1v58A 241 8.90e+00 c.47.1.9,d.17.3.1 108371,108372 1v9iC 261 8.91e+00 b.74.1.1 100541 1v9eA 259 8.93e+00 b.74.1.1 100539 1aogA 485 9.13e+00 3grs c.3.1.5,c.3.1.5,d.87.1.1 30517,30518,40190 1bzlA 486 9.17e+00 3grs c.3.1.5,c.3.1.5,d.87.1.1 30521,30522,40192 4fgf 146 9.34e+00 1bfg b.42.1.1 25486 1jzoA 216 9.36e+00 c.47.1.9,d.17.3.1 84267,84268 1jzdA 220 9.62e+00 c.47.1.9,d.17.3.1 84257,84258 1ev2A 132 9.84e+00 1bfg b.42.1.1 25493 1eejA 216 1.11e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1mn2 357 1.24e+01 1arv a.93.1.1 18666 1yydA 357 1.28e+01 1i7fA 292 1.29e+01 1i7fA d.193.1.1 61888 1o57A 291 1.29e+01 a.4.5.40,c.61.1.1 92483,92484 1mn1 357 1.30e+01 1arv a.93.1.1 18667 1p4aA 285 1.37e+01 a.4.5.40,c.61.1.1 94090,94091 1yal 218 1.38e+01 1cs8A d.3.1.1 37025 1cjxA 357 1.39e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1ko6A 187 1.40e+01 b.119.1.1 77471 1bff 129 1.42e+01 1bfg b.42.1.1 25489 1v6aA 332 1.44e+01 1vr6A 350 1.47e+01 2bkwA 385 1.52e+01 2bfh 128 1.53e+01 1bfg b.42.1.1 25497 1n08A 163 1.60e+01 b.43.5.1 79730 1q7eA 428 1.60e+01 c.123.1.1 96035 1e93A 484 1.63e+01 e.5.1.1 64802 1ndaA 491 1.65e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30525,30526,40194 1pt7A 437 1.66e+01 c.123.1.1 95093 1lnzA 342 1.66e+01 b.117.1.1,c.37.1.8 78112,78113 1rzmA 338 1.87e+01 c.1.10.4 105137 1rc6A 261 1.99e+01 b.82.1.11 97287 2h39A 351 2.09e+01 1sefA 274 2.09e+01 b.82.1.11 105452 1l3wA 546 2.17e+01 b.1.6.1,b.1.6.1,b.1.6.1,b.1.6.1,b.1.6.1 73553,73554,73555,73556,73557 1z84A 351 2.21e+01 1i2tA 61 2.23e+01 1i2tA a.144.1.1 61582 1ok7A 366 2.38e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1za6B 344 2.44e+01 1aec 218 2.44e+01 1cs8A d.3.1.1 37003 1fmd3 219 2.56e+01 1qqp3 2d8aA 348 2.57e+01 1ipkA 416 2.58e+01 b.82.1.2,b.82.1.2 71264,71265 1ipjA 416 2.58e+01 b.82.1.2,b.82.1.2 71258,71259 1u5uA 374 2.63e+01 1fvpA 231 2.66e+01 1nfp c.1.16.2 29556 1x7gA 261 2.72e+01 1k66A 149 2.73e+01 c.23.1.1 90941 2g19A 244 2.83e+01 1uc2A 481 2.87e+01 d.261.1.1 99161 2g1mA 246 2.92e+01 1w4zA 281 2.96e+01 1v0aA 178 3.05e+01 1jqlA 366 3.10e+01 d.131.1.1,d.131.1.1,d.131.1.1 63231,63232,63233 2a8sA 212 3.13e+01 2fvgA 340 3.14e+01 1jnpA 116 3.14e+01 b.63.1.1 66964 1txuA 273 3.28e+01 a.222.1.1 107439 1krrA 203 3.37e+01 b.81.1.3 72899 3gpdG 334 3.46e+01 1dssG c.2.1.3,d.81.1.1 30029,39944 2ah6A 208 3.52e+01 1vhwA 253 3.53e+01 c.56.2.1 100706 1uijA 416 3.54e+01 b.82.1.2,b.82.1.2 107866,107867 1walA 345 3.55e+01 1cnzA c.77.1.1 35041 1jbkA 195 3.68e+01 c.37.1.20 71631 1ipd 345 3.72e+01 1cnzA c.77.1.1 35038 1gwcA 230 3.75e+01 a.45.1.1,c.47.1.5 70660,70661 1emy 153 3.81e+01 1a6m a.1.1.2 15204 1gc9A 345 3.88e+01 1cnzA c.77.1.1 35037 2a0nA 265 3.98e+01 2ig2H 455 4.00e+01 1igtB b.1.1.1,b.1.1.2 19849,20953 1s1iF 162 4.10e+01 i.1.1.1 105180 1xaa 345 4.13e+01 1cnzA c.77.1.1 35033 1wpnA 188 4.22e+01 1xi5J 114 4.25e+01 1u29A 129 4.39e+01 1u2bA 138 4.40e+01 1rvkA 382 4.49e+01 c.1.11.2,d.54.1.1 97928,97929 2fgyA 542 4.50e+01 1mabA 510 4.53e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18311,26476,32356 1vh7A 265 4.54e+01 c.1.2.1 100646 1g2uA 345 4.56e+01 1cnzA c.77.1.1 35036 2f43A 510 4.59e+01 1gc8A 345 4.61e+01 1cnzA c.77.1.1 35042 1nmrA 85 4.62e+01 a.144.1.1 91992 1dr8A 344 4.63e+01 1cnzA c.77.1.1 35051 1dpzA 349 4.63e+01 1cnzA c.77.1.1 35053 1osjA 345 4.63e+01 1cnzA c.77.1.1 35039 1dr0A 346 4.63e+01 1cnzA c.77.1.1 35045 1gpwA 253 4.72e+01 c.1.2.1 65460 2b5wA 357 4.74e+01 2ck3A 510 4.76e+01 1efrA 510 4.77e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18299,26464,32344 2fbwB 252 4.78e+01 1f74A 293 4.79e+01 1nal3 c.1.10.1 29079 1ccs 259 4.81e+01 2cba b.74.1.1 27935 1lg5A 260 4.91e+01 b.74.1.1 73886 1fcqA 350 4.95e+01 c.1.8.9 65006 1idm 343 5.01e+01 1cnzA c.77.1.1 35035 2fvlA 324 5.04e+01 1nkqA 259 5.25e+01 d.177.1.1 103862 1zxkA 98 5.30e+01 1rxwA 336 5.34e+01 a.60.7.1,c.120.1.2 98059,98060 1h6rA 236 5.42e+01 d.22.1.1 65683 1fr7A 260 5.48e+01 2cba b.74.1.1 27828 1xad 345 5.52e+01 1cnzA c.77.1.1 35055 1zh9A 259 5.53e+01 2b5vA 357 5.56e+01 1th9A 260 5.61e+01 1zoyB 252 5.66e+01 1qzyA 478 5.69e+01 a.4.5.25,d.127.1.1 96717,96718 1jftA 340 5.70e+01 a.35.1.5,c.93.1.1 66652,66653 1thfD 253 5.71e+01 1thfD c.1.2.1 28535 1oroA 213 5.72e+01 1opr c.61.1.1 34093 1k72A 614 5.74e+01 a.102.1.2,b.2.2.2 84309,84310 1bllE 488 5.77e+01 1lam c.50.1.1,c.56.5.3 33170,33833 1a65A 504 5.84e+01 1a65A b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 1hfuA 503 5.85e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2f7fA 494 5.87e+01 1zglM 209 5.95e+01 1ffyA 917 5.95e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1zuoA 186 6.01e+01 2ewbA 486 6.08e+01 1b6a 478 6.11e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1cai 260 6.16e+01 2cba b.74.1.1 27830 1lam 484 6.23e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1ryaA 160 6.31e+01 d.113.1.5 105122 2viuB 175 6.31e+01 1hgeB h.3.1.1 45676 1ji6A 589 6.32e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1fh5H 198 6.32e+01 1igtB b.1.1.1,b.1.1.2 20465,21429 1bygA 278 6.49e+01 1fmk d.144.1.7 41705 1nijA 318 6.53e+01 c.37.1.10,d.237.1.1 85741,85742 1e7pG 655 6.54e+01 1qlaA a.7.3.1,c.3.1.4,d.168.1.1 59359,59360,59361 1nunB 230 6.56e+01 b.1.1.4,b.1.1.4 80735,80736 1yhgA 239 6.56e+01 2bs3A 656 6.56e+01 1gv1A 310 6.63e+01 c.2.1.5,d.162.1.1 65598,65599 1hzhH 457 6.66e+01 1igtB b.1.1.1,b.1.1.2,b.1.1.2,b.1.1.2 61437,61438,61439,61440 1cct 259 6.72e+01 2cba b.74.1.1 27910 1an7A 136 6.72e+01 1seiA d.140.1.1 41465 1m2oB 190 6.78e+01 c.37.1.8 78485 1v37A 177 6.79e+01 1fjgH 138 6.79e+01 1seiA d.140.1.1 41468 2fk0B 181 6.93e+01 1nldH 215 7.01e+01 1igtB b.1.1.1,b.1.1.2 20111,21141 1g87A 614 7.02e+01 a.102.1.2,b.2.2.2 83275,83276 2ah8A 236 7.11e+01 1gadO 330 7.18e+01 1dssG c.2.1.3,d.81.1.1 29950,39865 1s7cA 331 7.19e+01 c.2.1.3,d.81.1.1 105346,105347 1z74A 358 7.20e+01 1y2qA 143 7.21e+01 1gaeO 330 7.23e+01 1dssG c.2.1.3,d.81.1.1 29954,39869 1i6pA 220 7.26e+01 1ddzA c.53.2.1 61848 1hw7A 255 7.26e+01 1i7fA d.193.1.1 61297 1xjcA 169 7.27e+01 1qrcA 559 7.32e+01 1tyv b.80.1.6 28045 1nz6A 101 7.33e+01 a.2.3.1 86441 1clwA 554 7.38e+01 1tyv b.80.1.6 28043 1qa1A 554 7.39e+01 1tyv b.80.1.6 28047 1bic 260 7.43e+01 2cba b.74.1.1 27854 1qa3A 554 7.44e+01 1tyv b.80.1.6 28046 1yo1A 260 7.44e+01 1tyv 554 7.44e+01 1tyv b.80.1.6 28038 1qa2A 554 7.46e+01 1tyv b.80.1.6 28048 1h4vB 421 7.52e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1jh9A 340 7.67e+01 a.35.1.5,c.93.1.1 66710,66711 1i94H 138 7.68e+01 1seiA d.140.1.1 61999 1jhzA 289 7.73e+01 c.93.1.1 66731 1qyoA 239 7.75e+01 d.22.1.1 96601 2fnjA 226 7.79e+01 1qxrA 189 7.79e+01 b.82.1.7 96552 1uz2X 162 7.80e+01 b.60.1.1 108149 1n7zA 334 7.86e+01 b.127.1.1 85380 1x82A 190 7.87e+01 1z93A 266 7.92e+01 2d03H 223 7.93e+01 1t2qH 221 7.97e+01 2fouA 260 7.98e+01 3rpbA 140 8.11e+01 1rsy b.7.1.2 23199 1qrbA 559 8.12e+01 1tyv b.80.1.6 28042 2gc1A 188 8.13e+01 1z97A 266 8.15e+01 1qq1A 559 8.15e+01 1tyv b.80.1.6 28041 1tsp 559 8.17e+01 1tyv b.80.1.6 28044 1ydd 259 8.17e+01 2cba b.74.1.1 27911 1hea 260 8.22e+01 2cba b.74.1.1 27891 1a5z 319 8.27e+01 1ceqA c.2.1.5,d.162.1.1 30181,42148 1yda 259 8.28e+01 2cba b.74.1.1 27908 1heb 260 8.32e+01 2cba b.74.1.1 27892 2ba0A 229 8.37e+01 1zxfA 155 8.44e+01 1xqfA 418 8.54e+01 1cve 259 8.75e+01 2cba b.74.1.1 27915 1cnj 259 8.77e+01 2cba b.74.1.1 27850 1yzxA 226 8.78e+01 1q73A 236 8.80e+01 d.22.1.1 96018 1ni9A 338 8.83e+01 e.7.1.2 85739 1h9n 259 8.91e+01 2cba b.74.1.1 27840 1y5eA 169 8.99e+01