# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g0qA 173 1.88e-13 1vkbA 161 2.48e-13 d.269.1.1 108643 1v30A 124 5.63e-07 1cjxA 357 1.59e-01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1eejA 216 2.20e-01 1eejA c.47.1.9,d.17.3.1 33057,38071 2foyA 260 7.10e-01 1hcb 260 1.08e+00 2cba b.74.1.1 27814 1t5hX 504 1.68e+00 e.23.1.1 106449 1hw7A 255 1.78e+00 1i7fA d.193.1.1 61297 1lugA 259 1.85e+00 b.74.1.1 91127 1fr7A 260 2.01e+00 2cba b.74.1.1 27828 1ln1A 214 2.87e+00 d.129.3.2 74038 1h4vB 421 3.01e+00 1adjA c.51.1.1,d.104.1.1 60624,60625 1yo1A 260 3.36e+00 1wu7A 434 3.59e+00 1adjA 421 3.75e+00 1adjA c.51.1.1,d.104.1.1 33188,40737 8rucI 123 4.08e+00 1rboC d.73.1.1 39629 2cba 260 4.85e+00 2cba b.74.1.1 27821 1vbuA 328 5.13e+00 1s9jA 341 5.66e+00 1k3eA 156 5.74e+00 d.198.1.1 68103 2fgeA 995 6.42e+00 1zotA 358 6.63e+00 2f7fA 494 6.89e+00 1g4wR 383 7.48e+00 1g4uS a.24.11.1,c.45.1.2 16644,32692 1pbwA 216 7.79e+00 1pbwA a.116.1.1 19103 1fiwA 290 8.04e+00 5ptp 1p32A 209 8.05e+00 1p32A d.25.1.1 38379 2fp8A 322 8.25e+00 1blxA 326 8.43e+00 1hcl d.144.1.7 41596 1yemA 179 8.43e+00 1vbvA 105 9.36e+00 1bif 469 9.63e+00 1bif c.37.1.7,c.60.1.4 31961,34003 1lnzA 342 9.77e+00 b.117.1.1,c.37.1.8 78112,78113 2d2eA 250 1.02e+01 1g5cA 170 1.06e+01 1g5cA c.53.2.1 60264 1px5A 349 1.07e+01 a.160.1.2,d.218.1.6 95277,95278 1pyaB 228 1.11e+01 1pyaB 1lwdA 413 1.16e+01 c.77.1.1 78265 1jalA 363 1.17e+01 c.37.1.8,d.15.10.2 84138,84139 1fnc 314 1.20e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1fnd 314 1.21e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1tzzA 392 1.28e+01 1fvgA 199 1.28e+01 1fvaA d.58.28.1 39408 1fljA 260 1.31e+01 2cba b.74.1.1 27954 1wa3A 205 1.35e+01 1x6oA 174 1.41e+01 b.34.5.2,b.40.4.5 109493,109494 1aj8A 371 1.41e+01 1aj8A a.103.1.1 18900 1uekA 275 1.42e+01 d.14.1.5,d.58.26.5 88483,88484 1jfuA 186 1.42e+01 c.47.1.10 62940 1nxmA 197 1.48e+01 b.82.1.1 86385 1eqoA 158 1.54e+01 1hka 1f9yA 158 1.54e+01 d.58.30.1 83249 1vkkA 154 1.57e+01 d.109.1.2 108669 1tk1A 260 1.57e+01 d.248.1.1 107066 1bx1A 314 1.58e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1yqgA 263 1.64e+01 1zz1A 369 1.66e+01 1m4jA 142 1.69e+01 d.109.1.2 78602 1nm2A 317 1.77e+01 c.19.1.1,d.58.23.1 80654,80655 1z94A 147 1.79e+01 1rreA 200 1.84e+01 d.14.1.10 97791 1kwgA 645 1.87e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1viuA 203 1.90e+01 d.113.1.1 100771 1vj1A 363 1.91e+01 b.35.1.2,c.2.1.1 100794,100795 1zd0A 150 1.99e+01 1e8gA 560 2.01e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1tl9A 339 2.02e+01 1s6yA 450 2.06e+01 c.2.1.5,d.162.1.2 105314,105315 1yruA 364 2.13e+01 1fgyA 127 2.18e+01 1faoA b.55.1.1 26976 1ua4A 455 2.19e+01 c.72.1.3 99128 2d9rA 104 2.26e+01 2fvgA 340 2.29e+01 1v6fA 151 2.31e+01 d.109.1.2 108395 1rlhA 173 2.35e+01 d.256.1.1 97646 1y2qA 143 2.35e+01 1rovA 857 2.40e+01 a.119.1.1,b.12.1.1 97674,97675 1s96A 219 2.49e+01 c.37.1.1 98740 1ww7A 160 2.52e+01 1vlwA 217 2.58e+01 c.1.10.1 108868 1nrlA 316 2.58e+01 a.123.1.1 92091 2an9A 207 2.62e+01 1j2gA 319 2.69e+01 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1ospO 257 2.74e+01 1ospO b.76.1.1 27971 1n9lA 109 2.76e+01 d.110.3.6 85468 1s9pA 227 2.80e+01 a.123.1.1 105384 1uxzA 131 2.83e+01 b.18.1.10 100170 1xjvA 294 2.85e+01 1i74A 309 2.86e+01 1i74A c.107.1.1 61867 1lshA 1056 2.94e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1j4aA 333 3.01e+01 c.2.1.4,c.23.12.1 71502,71503 1yx1A 264 3.09e+01 1yl31 118 3.11e+01 1ukkA 142 3.14e+01 d.227.1.1 99491 2bx6A 350 3.20e+01 1zgoA 223 3.24e+01 1w1kA 560 3.25e+01 d.58.32.1,d.145.1.1 109059,109060 2hhmA 276 3.40e+01 1imbA e.7.1.1 42955 1i36A 264 3.47e+01 a.100.1.8,c.2.1.6 71108,71109 1yrtA 364 3.49e+01 1iqzA 81 3.64e+01 d.58.1.4 66281 2aexA 346 3.65e+01 1zupA 315 3.70e+01 1b04A 318 3.73e+01 1b04A d.142.2.2 41579 2fl7A 232 3.80e+01 1ukuA 102 3.80e+01 d.58.5.2 99533 1z02A 446 3.81e+01 1k32A 1045 3.83e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1mv3A 213 3.84e+01 b.34.2.1 91468 1nekA 588 3.86e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1iw7C 1119 3.90e+01 e.29.1.1 71474 1poiA 317 3.93e+01 1poiA c.124.1.2 34153 1qxoA 388 3.97e+01 d.258.1.1 96539 1v0aA 178 3.98e+01 1e39A 571 4.07e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1yoxA 250 4.07e+01 1rocA 155 4.11e+01 b.1.22.1 97673 1p15A 253 4.12e+01 c.45.1.2 93894 1qj2B 809 4.12e+01 1qj2B 1wddS 128 4.13e+01 1sjdA 368 4.15e+01 c.1.11.2,d.54.1.1 105632,105633 1uxtA 501 4.17e+01 c.82.1.1 108125 2a74C 343 4.28e+01 1uy4A 145 4.38e+01 b.18.1.10 108131 1zxkA 98 4.41e+01 1k66A 149 4.44e+01 c.23.1.1 90941 1ggxA 223 4.55e+01 1ggxA d.22.1.1 38367 2f96A 224 4.58e+01 1kssA 571 4.60e+01 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1n62B 809 4.61e+01 d.41.1.1,d.133.1.1 80092,80093 2a73B 991 4.64e+01 1h2kA 349 4.65e+01 b.82.2.6 76572 2ck3A 510 4.71e+01 2bsaA 303 4.77e+01 1ng4A 390 4.83e+01 c.3.1.2,d.16.1.3 85666,85667 1obbA 480 4.83e+01 c.2.1.5,d.162.1.2 86760,86761 1p6oA 161 4.94e+01 c.97.1.2 94185 1ryiA 382 4.95e+01 1wdnA 226 5.01e+01 1lst c.94.1.1 35816 1wfuA 120 5.04e+01 1zxiB 809 5.16e+01 1pqxA 91 5.17e+01 d.267.1.1 104296 1oxdA 227 5.19e+01 d.22.1.1 93687 1woqA 267 5.22e+01 c.55.1.10,c.55.1.10 109462,109463 1e5mA 416 5.34e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1s14A 194 5.35e+01 d.122.1.2 98329 1oohA 126 5.41e+01 a.39.2.1 93383 1vi2A 300 5.46e+01 c.2.1.7,c.58.1.5 100726,100727 1p2hA 571 5.48e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2bmoA 447 5.55e+01 1vh7A 265 5.58e+01 c.1.2.1 100646 1y0pA 571 5.64e+01 1f2dA 341 5.68e+01 1f2dA c.79.1.1 35298 1q9iA 571 5.78e+01 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1c0pA 363 5.79e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1imbA 277 5.81e+01 1imbA e.7.1.1 42957 2a6hC 1119 5.87e+01 1bfg 146 5.88e+01 1bfg b.42.1.1 25485 1aszB 490 5.89e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 3rubS 123 5.91e+01 1rboC d.73.1.1 39616 1p5zB 263 5.92e+01 c.37.1.1 87815 1zsqA 528 5.96e+01 1ve1A 304 5.97e+01 1ad2 228 5.99e+01 1ad2 e.24.1.1 43353 1qwtA 255 6.01e+01 b.26.1.3 96501 1n0uA 842 6.09e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1tdhA 364 6.12e+01 a.156.1.2,b.113.1.1,g.39.1.8 106772,106773,106774 2fflA 756 6.20e+01 2absA 383 6.42e+01 1larA 575 6.49e+01 1larA c.45.1.2,c.45.1.2 32693,32694 1r61A 207 6.54e+01 c.8.8.1 97138 1eur 365 6.55e+01 1eut b.68.1.1 27607 1kgdA 180 6.56e+01 c.37.1.1 68582 2cwsA 237 6.56e+01 2ghjA 118 6.57e+01 1p0yA 444 6.58e+01 a.166.1.1,b.85.7.3 87654,87655 1uisA 231 6.64e+01 d.22.1.1 99431 1kevA 351 6.69e+01 1pedA b.35.1.2,c.2.1.1 24749,29765 1xs5A 241 6.71e+01 1nnhA 294 6.75e+01 d.104.1.1 92005 2eucA 130 6.76e+01 1nvmB 312 6.80e+01 c.2.1.3,d.81.1.1 86251,86252 1od3A 168 6.80e+01 b.18.1.10 86825 1v0jA 399 6.84e+01 1g3mA 294 6.85e+01 c.37.1.5 83268 2h21A 440 7.04e+01 2ffmA 91 7.11e+01 1ia6A 441 7.18e+01 a.102.1.2 76738 1w8oA 601 7.23e+01 1u7zA 226 7.26e+01 1mdbA 539 7.28e+01 e.23.1.1 79008 1uiuA 502 7.30e+01 c.94.1.1 99434 1qqrA 138 7.31e+01 1bmlC d.15.5.1 37721 1mxmA 254 7.33e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1yb5A 351 7.37e+01 1a1x 108 7.39e+01 1a1x b.63.1.1 27514 1f86A 115 7.40e+01 1etb1 b.3.4.1 59689 1h8eA 510 7.43e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1tafB 70 7.46e+01 1tafB a.22.1.3 16482 1wvfA 520 7.46e+01 2g39A 497 7.50e+01 1idaA 99 7.54e+01 1fmb b.50.1.1 26715 1j0dA 341 7.57e+01 c.79.1.1 83902 1eceA 358 7.62e+01 1eceA c.1.8.3 28813 1wcqA 601 7.65e+01 1tu1A 148 7.78e+01 d.107.1.3 107316 1fcdA 401 7.82e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1svvA 359 7.82e+01 c.67.1.1 106054 1pwmA 316 7.85e+01 c.1.7.1 95231 1mi1A 414 7.89e+01 a.169.1.1,b.55.1.6 79137,79138 2aw4Q 117 7.95e+01 1zvnA 99 8.08e+01 2cxnA 557 8.09e+01 1y5iB 512 8.10e+01 1gk8A 475 8.10e+01 c.1.14.1,d.58.9.1 65234,65235 1ro5A 201 8.16e+01 d.108.1.3 105023 1a7s 221 8.16e+01 1a7s b.47.1.2 26284 2gi3A 476 8.18e+01 1kl9A 182 8.19e+01 b.40.4.5 72681 2gaeA 346 8.20e+01 1jihA 531 8.21e+01 d.240.1.1,e.8.1.7 90374,90375 1pg4A 652 8.21e+01 e.23.1.1 88067 2c3gA 98 8.30e+01 1u3eM 174 8.36e+01 d.4.1.3,d.285.1.1 107640,107641 1wpoA 256 8.38e+01 1lay b.57.1.1 27012 1gen 218 8.41e+01 1gen b.66.1.1 27536 1q16B 512 8.43e+01 d.58.1.5 95548 2fh7A 595 8.48e+01 1lx7A 253 8.49e+01 c.56.2.1 74329 1mg7A 417 8.49e+01 d.14.1.6,d.58.26.6 84954,84955 1fzqA 181 8.50e+01 1hurA c.37.1.8 32060 1vzyA 291 8.51e+01 1uxjA 309 8.63e+01 c.2.1.5,d.162.1.1 108112,108113 2bhvA 246 8.64e+01 1zlqA 502 8.66e+01 2c6yA 111 8.68e+01 1zsoA 164 8.68e+01 1lci 550 8.68e+01 1lci e.23.1.1 43349 1txnA 328 8.79e+01 1fecA 490 8.80e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1ir21 140 8.89e+01 1b25A 619 8.90e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1wo8A 126 8.94e+01 1y07A 128 8.96e+01 1pda 315 8.98e+01 1pda c.94.1.1,d.50.2.1 35751,38794