# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vkbA 161 8.19e-15 d.269.1.1 108643 2g0qA 173 9.24e-13 1v30A 124 6.73e-08 1yqgA 263 2.33e+00 1pjr 724 4.26e+00 1pjr c.37.1.19,c.37.1.19 32391,32392 1wekA 217 5.32e+00 1y2qA 143 6.37e+00 1b6a 478 6.79e+00 1bn5 a.4.5.25,d.127.1.1 16223,41160 1k66A 149 7.34e+00 c.23.1.1 90941 1p2fA 220 9.56e+00 a.4.6.1,c.23.1.1 87720,87721 1wteA 272 1.03e+01 1v0aA 178 1.12e+01 1ku1A 230 1.14e+01 a.118.3.1 72996 2d2eA 250 1.17e+01 1nb8A 353 1.28e+01 d.3.1.9 80385 1jlnA 297 1.31e+01 1pty c.45.1.2 63172 1fc1A 224 1.38e+01 1igtB b.1.1.2,b.1.1.2 21520,21521 1lrv 244 1.57e+01 1lrv a.118.1.5 19146 1f2eA 201 1.69e+01 1a0fA a.45.1.1,c.47.1.5 17745,33039 5pal 109 1.83e+01 1a75A a.39.1.4 17215 1u3eM 174 1.88e+01 d.4.1.3,d.285.1.1 107640,107641 1f8gA 384 1.95e+01 1sayA c.2.1.4,c.23.12.2 59695,59696 1u6mA 199 2.03e+01 1wg8A 285 2.13e+01 1nbfA 353 2.15e+01 d.3.1.9 80387 2fdsA 352 2.19e+01 1ei5A 520 2.19e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1xyzA 347 2.27e+01 1taxA c.1.8.3 28804 1nz6A 101 2.29e+01 a.2.3.1 86441 1l6xA 207 2.31e+01 b.1.1.2,b.1.1.2 73642,73643 1eejA 216 2.39e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1y96A 86 2.45e+01 1bf5A 545 2.49e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1i6iA 366 2.51e+01 1bg2 c.37.1.9 61844 2fh7A 595 2.54e+01 2bzlA 325 2.57e+01 1pmhX 185 2.61e+01 b.18.1.18 104193 1ihkA 174 2.69e+01 1bfg b.42.1.1 62384 1i6pA 220 2.72e+01 1ddzA c.53.2.1 61848 1vfvA 366 2.75e+01 c.37.1.9 108592 2b3oA 532 2.78e+01 1k4mA 213 2.81e+01 c.26.1.3 77258 1zbpA 273 2.83e+01 1ko7A 314 2.87e+01 c.98.2.1,c.91.1.2 72797,72798 2ftzA 284 3.00e+01 1s1pA 331 3.01e+01 c.1.7.1 98350 1l7dA 384 3.02e+01 c.2.1.4,c.23.12.2 77774,77775 1u09A 476 3.13e+01 e.8.1.4 107545 1ep3B 262 3.24e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 2aqwA 332 3.39e+01 2ao0A 324 3.51e+01 1j5wA 298 3.60e+01 d.104.1.1 71589 1ssfA 156 3.76e+01 b.34.9.1,b.34.9.1 105982,105983 1sflA 238 3.93e+01 1n08A 163 4.03e+01 b.43.5.1 79730 1b9oA 123 4.03e+01 3lzt d.2.1.2 36597 2f1fA 164 4.07e+01 2f7fA 494 4.24e+01 1fxxA 482 4.39e+01 1fxxA c.55.3.5 33726 2g39A 497 4.41e+01 1i8fA 81 4.50e+01 1i8fA b.38.1.1 61959 1yzxA 226 4.66e+01 2axtO 247 4.68e+01 1wrmA 165 4.68e+01 1wvcA 259 4.74e+01 1g7fA 298 4.81e+01 1pty c.45.1.2 60330 2fvvA 194 4.85e+01 1vg8A 207 4.88e+01 c.37.1.8 108606 1qgvA 142 4.94e+01 1qgvA c.47.1.8 33056 1nkqA 259 5.08e+01 d.177.1.1 103862 1bjt 793 5.13e+01 1bjt e.11.1.1 43249 1louA 101 5.16e+01 1ris d.58.14.1 39323 1rtxA 123 5.18e+01 a.1.1.1 97827 1xzoA 174 5.18e+01 6ldh 330 5.19e+01 3ldh c.2.1.5,d.162.1.1 30161,42128 2fqxA 318 5.20e+01 1zq7A 207 5.28e+01 1sfjA 238 5.30e+01 1kpf 126 5.34e+01 1kpf d.13.1.1 37507 1larA 575 5.35e+01 1larA c.45.1.2,c.45.1.2 32693,32694 1vprA 374 5.35e+01 1ryaA 160 5.36e+01 d.113.1.5 105122 1rvkA 382 5.38e+01 c.1.11.2,d.54.1.1 97928,97929 1ev2E 220 5.45e+01 1cvsC b.1.1.4,b.1.1.4 21738,21739 1kg0C 136 5.48e+01 d.169.1.1 72445 1j4aA 333 5.58e+01 c.2.1.4,c.23.12.1 71502,71503 2f8lA 344 5.67e+01 1n7zA 334 5.95e+01 b.127.1.1 85380 2ganA 190 6.14e+01 1twfH 146 6.19e+01 1t35A 191 6.24e+01 c.129.1.1 99108 2bmoA 447 6.54e+01 1cjxA 357 6.57e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1g5cA 170 6.65e+01 1g5cA c.53.2.1 60264 1zc1A 208 6.66e+01 1ow5A 85 6.68e+01 a.60.1.2 93630 2dg5A 366 6.74e+01 1t8qA 336 6.76e+01 c.1.18.3 106669 2cy2A 174 6.87e+01 1wb4A 297 6.87e+01 1eg9A 449 6.89e+01 1ndoA b.33.1.2,d.129.3.3 24443,41322 1u2cA 246 6.97e+01 b.1.6.2,d.272.1.1 107610,107611 1s69A 124 7.00e+01 a.1.1.1 105305 1h7zA 194 7.01e+01 1qhvA b.21.1.1 60733 1a1x 108 7.01e+01 1a1x b.63.1.1 27514 2akaB 299 7.04e+01 1pvc1 301 7.07e+01 1pov1 1y44A 320 7.09e+01 1kz1A 159 7.09e+01 c.16.1.1 73318 1fnc 314 7.32e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1a0i 348 7.39e+01 1a0i b.40.4.6,d.142.2.1 25363,41577 1kpeA 126 7.40e+01 1kpf d.13.1.1 37508 1ve1A 304 7.45e+01 1fnd 314 7.46e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1g4mA 393 7.53e+01 b.1.18.11,b.1.18.11 65143,65144 2f71A 298 7.55e+01 2shpA 525 7.59e+01 2shpA c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 1gklA 297 7.67e+01 c.69.1.2 65250 1hw7A 255 7.68e+01 1i7fA d.193.1.1 61297 1u7lA 392 7.71e+01 2bv5A 282 7.71e+01 2polA 366 7.85e+01 2polA d.131.1.1,d.131.1.1,d.131.1.1 41356,41357,41358 1sq5A 308 7.94e+01 c.37.1.6 105882 3il8 72 7.96e+01 1tvxA d.9.1.1 37356 1qqhA 144 7.98e+01 1dtoA b.91.1.1 28404 2fvgA 340 8.00e+01 2fnoA 248 8.00e+01 1tqhA 247 8.00e+01 c.69.1.29 107225 1mmiA 366 8.06e+01 d.131.1.1,d.131.1.1,d.131.1.1 91309,91310,91311 1i50H 146 8.09e+01 b.40.4.8 61761 1gtmA 419 8.25e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1zgmA 248 8.36e+01 1pa1A 310 8.48e+01 c.45.1.2 94404 1p15A 253 8.48e+01 c.45.1.2 93894 1y8aA 332 8.50e+01 1sk4A 163 8.55e+01 d.118.1.1 105664 1a12A 413 8.63e+01 1a12A b.69.5.1 27663 2awkA 228 8.80e+01