Best Alignments for T0342

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1z6nA/T0342-1z6nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z6nA/T0342-1z6nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3571e+002.45e-03
2d1eA/T0342-2d1eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2d1eA/T0342-2d1eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7853e+001.31e-04
2tct/T0342-2tct-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2tct/T0342-2tct-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9935e+004.41e-05 2tct a.4.1.9
a.121.1.1
2utgA/T0342-2utgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2utgA/T0342-2utgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4737e+003.05e+00 1utg a.101.1.1
1qjtA/T0342-1qjtA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qjtA/T0342-1qjtA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.1008e+002.84e-04 1eh2 a.39.1.6
1v37A/T0342-1v37A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v37A/T0342-1v37A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.2338e+003.33e-06
1rbp/T0342-1rbp-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rbp/T0342-1rbp-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.1748e+001.03e-01 1aqb b.60.1.1
1c3pA/T0342-1c3pA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1c3pA/T0342-1c3pA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.3527e+003.70e-04 1c3pA c.42.1.2
1zbmA/T0342-1zbmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zbmA/T0342-1zbmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.8068e+005.97e-02
1pmzA/T0342-1pmzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pmzA/T0342-1pmzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0272e+012.12e-02 a.39.1.10

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001