# TARGET T0342 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0342.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 9 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 K 0.047 0.001 0.001 0.001 0.087 0.864 2 K 0.631 0.008 0.001 0.002 0.020 0.339 3 I 0.952 0.005 0.001 0.001 0.003 0.039 4 I 0.966 0.001 0.001 0.002 0.004 0.026 5 C 0.935 0.007 0.002 0.004 0.011 0.042 6 M 0.441 0.002 0.005 0.015 0.098 0.438 7 G 0.184 0.010 0.031 0.044 0.412 0.319 8 A 0.071 0.018 0.114 0.090 0.523 0.185 9 K 0.046 0.018 0.250 0.139 0.455 0.091 10 E 0.046 0.014 0.318 0.243 0.312 0.067 11 N 0.038 0.003 0.098 0.302 0.380 0.180 12 G 0.012 0.003 0.003 0.011 0.201 0.770 13 L 0.017 0.018 0.001 0.006 0.101 0.858 14 P 0.018 0.011 0.003 0.047 0.140 0.782 15 L 0.002 0.001 0.026 0.881 0.042 0.048 16 E 0.003 0.001 0.020 0.937 0.025 0.014 17 Y 0.005 0.001 0.024 0.941 0.021 0.009 18 Q 0.016 0.001 0.016 0.938 0.014 0.015 19 E 0.018 0.002 0.025 0.918 0.025 0.012 20 K 0.011 0.001 0.030 0.896 0.030 0.032 21 L 0.016 0.002 0.068 0.799 0.060 0.054 22 K 0.012 0.002 0.061 0.783 0.069 0.072 23 A 0.026 0.005 0.055 0.685 0.081 0.148 24 I 0.047 0.026 0.040 0.384 0.163 0.341 25 E 0.063 0.010 0.040 0.213 0.224 0.450 26 P 0.089 0.017 0.050 0.130 0.350 0.364 27 N 0.065 0.017 0.076 0.089 0.394 0.359 28 D 0.046 0.011 0.027 0.028 0.418 0.471 29 Y 0.053 0.026 0.025 0.027 0.438 0.431 30 T 0.045 0.010 0.010 0.034 0.246 0.655 31 G 0.075 0.032 0.009 0.081 0.222 0.582 32 K 0.065 0.054 0.004 0.111 0.119 0.648 33 V 0.071 0.016 0.007 0.190 0.080 0.636 34 S 0.039 0.006 0.017 0.412 0.081 0.444 35 E 0.007 0.001 0.036 0.871 0.028 0.057 36 E 0.006 0.001 0.047 0.915 0.019 0.012 37 I 0.005 0.001 0.031 0.932 0.021 0.009 38 E 0.005 0.001 0.031 0.941 0.017 0.005 39 D 0.004 0.001 0.022 0.928 0.033 0.012 40 I 0.005 0.001 0.017 0.908 0.047 0.024 41 I 0.010 0.006 0.011 0.875 0.056 0.042 42 K 0.019 0.010 0.009 0.773 0.136 0.052 43 K 0.014 0.002 0.008 0.638 0.212 0.126 44 G 0.008 0.002 0.019 0.215 0.460 0.295 45 E 0.050 0.010 0.054 0.226 0.434 0.226 46 T 0.079 0.029 0.093 0.243 0.259 0.297 47 Q 0.057 0.040 0.083 0.215 0.196 0.410 48 T 0.034 0.015 0.035 0.128 0.125 0.664 49 L 0.001 0.001 0.001 0.005 0.017 0.976