# TARGET T0342 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0342.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 9 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 K 0.001 0.002 0.866 0.007 0.001 0.003 0.001 0.001 0.019 0.090 0.007 0.001 0.003 2 K 0.001 0.020 0.530 0.005 0.001 0.009 0.010 0.046 0.292 0.053 0.007 0.007 0.019 3 I 0.008 0.041 0.075 0.001 0.001 0.016 0.068 0.378 0.347 0.014 0.002 0.015 0.035 4 I 0.006 0.027 0.142 0.002 0.001 0.027 0.042 0.334 0.329 0.020 0.002 0.031 0.037 5 C 0.001 0.017 0.424 0.001 0.001 0.044 0.008 0.126 0.267 0.058 0.011 0.006 0.035 6 M 0.001 0.007 0.477 0.004 0.013 0.167 0.001 0.006 0.052 0.154 0.112 0.002 0.006 7 G 0.001 0.002 0.164 0.001 0.051 0.476 0.001 0.001 0.005 0.119 0.180 0.001 0.001 8 A 0.001 0.004 0.066 0.001 0.093 0.653 0.001 0.001 0.001 0.079 0.102 0.001 0.002 9 K 0.001 0.004 0.026 0.001 0.083 0.768 0.001 0.001 0.001 0.020 0.095 0.001 0.002 10 E 0.001 0.004 0.036 0.001 0.052 0.570 0.001 0.001 0.001 0.040 0.293 0.001 0.002 11 N 0.001 0.002 0.090 0.001 0.019 0.219 0.001 0.001 0.001 0.108 0.559 0.001 0.001 12 G 0.001 0.013 0.322 0.001 0.013 0.073 0.001 0.001 0.001 0.230 0.343 0.001 0.005 13 L 0.001 0.007 0.752 0.001 0.005 0.041 0.001 0.001 0.001 0.166 0.018 0.008 0.003 14 P 0.001 0.007 0.791 0.001 0.009 0.150 0.001 0.001 0.001 0.019 0.018 0.001 0.006 15 L 0.001 0.002 0.051 0.001 0.011 0.890 0.001 0.001 0.001 0.017 0.027 0.001 0.001 16 E 0.001 0.001 0.008 0.001 0.011 0.947 0.001 0.001 0.001 0.010 0.023 0.001 0.001 17 Y 0.001 0.001 0.009 0.001 0.007 0.965 0.001 0.001 0.001 0.006 0.011 0.001 0.001 18 Q 0.001 0.001 0.010 0.001 0.011 0.965 0.001 0.001 0.001 0.003 0.007 0.001 0.001 19 E 0.001 0.001 0.008 0.001 0.009 0.962 0.001 0.001 0.001 0.003 0.012 0.001 0.002 20 K 0.001 0.001 0.006 0.001 0.007 0.951 0.001 0.001 0.001 0.004 0.030 0.001 0.001 21 L 0.001 0.001 0.010 0.001 0.013 0.919 0.001 0.001 0.001 0.009 0.046 0.001 0.001 22 K 0.001 0.002 0.044 0.002 0.039 0.716 0.001 0.001 0.001 0.031 0.156 0.004 0.002 23 A 0.001 0.005 0.074 0.001 0.062 0.529 0.001 0.001 0.002 0.068 0.243 0.002 0.012 24 I 0.002 0.043 0.328 0.003 0.044 0.245 0.001 0.001 0.006 0.198 0.102 0.012 0.017 25 E 0.001 0.010 0.509 0.004 0.052 0.071 0.001 0.001 0.007 0.252 0.058 0.026 0.012 26 P 0.001 0.012 0.385 0.003 0.123 0.040 0.001 0.001 0.007 0.114 0.294 0.002 0.020 27 N 0.001 0.068 0.286 0.001 0.112 0.036 0.001 0.001 0.010 0.183 0.290 0.006 0.007 28 D 0.001 0.025 0.346 0.001 0.101 0.034 0.001 0.001 0.004 0.227 0.253 0.002 0.007 29 Y 0.001 0.008 0.192 0.001 0.085 0.062 0.001 0.001 0.001 0.194 0.450 0.002 0.004 30 T 0.001 0.006 0.200 0.001 0.068 0.086 0.001 0.001 0.001 0.297 0.336 0.001 0.003 31 G 0.001 0.009 0.277 0.001 0.026 0.117 0.001 0.001 0.001 0.426 0.134 0.004 0.005 32 K 0.001 0.041 0.513 0.001 0.012 0.152 0.001 0.001 0.002 0.185 0.079 0.002 0.015 33 V 0.001 0.035 0.566 0.001 0.012 0.259 0.001 0.001 0.004 0.058 0.046 0.010 0.010 34 S 0.001 0.005 0.819 0.001 0.003 0.148 0.001 0.001 0.001 0.012 0.006 0.001 0.006 35 E 0.001 0.002 0.044 0.001 0.009 0.923 0.001 0.001 0.001 0.008 0.012 0.001 0.001 36 E 0.001 0.001 0.002 0.001 0.002 0.982 0.001 0.001 0.001 0.003 0.010 0.001 0.001 37 I 0.001 0.001 0.002 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.006 0.001 0.001 38 E 0.001 0.001 0.003 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.003 0.001 0.001 39 D 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.005 0.001 0.001 40 I 0.001 0.001 0.004 0.001 0.003 0.978 0.001 0.001 0.001 0.003 0.010 0.001 0.001 41 I 0.001 0.001 0.006 0.001 0.006 0.958 0.001 0.001 0.001 0.005 0.022 0.001 0.001 42 K 0.001 0.001 0.012 0.001 0.013 0.834 0.001 0.001 0.001 0.008 0.130 0.001 0.001 43 K 0.001 0.001 0.020 0.001 0.007 0.464 0.001 0.001 0.001 0.036 0.470 0.001 0.001 44 G 0.001 0.002 0.221 0.001 0.005 0.170 0.001 0.001 0.001 0.224 0.371 0.002 0.004 45 E 0.001 0.007 0.657 0.001 0.012 0.076 0.001 0.001 0.002 0.177 0.038 0.013 0.016 46 T 0.005 0.015 0.463 0.002 0.021 0.142 0.001 0.001 0.008 0.200 0.032 0.035 0.076 47 Q 0.004 0.031 0.531 0.001 0.013 0.091 0.001 0.001 0.019 0.078 0.049 0.125 0.058 48 T 0.001 0.012 0.846 0.001 0.002 0.020 0.001 0.001 0.015 0.007 0.011 0.006 0.080 49 L 0.001 0.001 0.988 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.003