a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0342
- gi|55628290|ref|XP_519024.1|_140:188 PREDICTED: similar to chromosome 7 open reading frame 24 [Pan troglodytes]
- gi|15530290|gb|AAH13937.1| Chromosome 7 open reading frame 24 [Homo sapiens]
- gi|12653681|gb|AAH00625.1| Chromosome 7 open reading frame 24 [Homo sapiens]
- gi|13129018|ref|NP_076956.1| hypothetical protein LOC79017 [Homo sapiens]
- gi|17512589|gb|AAH19243.1| Hypothetical protein LOC79017 [Homo sapiens]
- gi|34222503|sp|O75223|CG024_HUMAN Protein C7orf24 [Taxonomy]
- gi|51105868|gb|EAL24452.1| chromosome 7 open reading frame 24 [Homo sapiens]
- gi|109066975|ref|XP_001085474.1|_140:188 PREDICTED: similar to C44B7.7 isoform 3 [Macaca mulatta]
- gi|81674275|gb|AAI09623.1|_140:186 Unknown (protein for MGC:133989) [Bos taurus]
- gi|83035087|ref|NP_001032699.1| hypothetical protein LOC533374 [Bos taurus]
- gi|34855922|ref|XP_342696.1|_140:187 PREDICTED: similar to RIKEN cDNA A030007L17 [Rattus norvegicus]
- gi|34855914|ref|XP_342694.1| PREDICTED: similar to RIKEN cDNA A030007L17 [Rattus norvegicus]
- gi|73976561|ref|XP_854377.1|_279:325 PREDICTED: similar to C44B7.7 [Canis familiaris]
- gi|21311849|ref|NP_080913.1|_140:184 hypothetical protein LOC68252 [Mus musculus]
- gi|74194380|dbj|BAE24696.1| unnamed protein product [Mus musculus]
- gi|12843087|dbj|BAB25854.1| unnamed protein product [Mus musculus]
- gi|26348015|dbj|BAC37656.1| unnamed protein product [Mus musculus]
- gi|26340774|dbj|BAC34049.1| unnamed protein product [Mus musculus]
- gi|34222627|sp|Q9D7X8|CG024_MOUSE Protein C7orf24 homolog [Taxonomy]
- gi|51874045|gb|AAH80818.1|_140:184 RIKEN cDNA A030007L17 [Mus musculus]
- gi|55651242|ref|XP_525274.1|_130:172 PREDICTED: similar to chromosome 7 open reading frame 24 [Pan troglodytes]
- gi|50732812|ref|XP_418776.1|_540:582 PREDICTED: similar to chromosome 7 open reading frame 24 [Gallus gallus]
- gi|66396567|gb|AAH96512.1|_137:169 LOC613056 protein [Xenopus tropicalis]
- gi|89268932|emb|CAJ81344.1|_138:170 novel protein [Xenopus tropicalis]
- gi|28279692|gb|AAH45940.1|_166:208 Zgc:56140 [Danio rerio]
- gi|47085667|ref|NP_998170.1| hypothetical protein LOC406278 [Danio rerio]
- gi|47229386|emb|CAF99374.1|_167:195 unnamed protein product [Tetraodon nigroviridis]

              10        20        30            40         
              |         |         |             |         
   1 KKIICMGAKENGLPLEYQEKLKAIEPNDYTGK..VS..EEIEDIIKKGETQTL
   2 KKIICMGAKENGLPLEYQEKLKAIEPNDYTGK..VS..EEIEDIIKKGETQTL
   3 KKIICMGAKENGLPLEYQEKLKAIEPNDYTGK..VA..EEIEDIIKKGETQTL
   4 KKVICMGAKENGLPLEYQKKLNSIEPNDYKGK..VS..EEIEDIIKKGEAK--
   5 KKVICMGAKENGLPLEYQEKLNVIEPNDYKGK..IS..DEMEDIIKKGEAKL-
   6 KKVICLGAKENGLPLEYQKKLNAIEPNDYKGE..VS..EEIEDIIKKGEIK--
   7 KKVICMGAKENGLPQEYQEKLKAIEPNEYKGK..IS..DEMEDIIKKGE----
   8 KKVICMGAKENGLPQEYQEKLKAIEPNEYKGK..IS..DEMEDIIKKGE----
   9 KKVICIGAKENGLPLEYKKKLKAVGPNDRTGK..VS..EEIEDIIKK------
  10 KKVICMGAKQNGLPTEYQKKLEAIETNNYAGP..VPilEEIEATI--------
  11 KQVLCMGAKQNDLPLKYQKMLKEIETNNFSGH..I-..---------------
  12 KQVLCMGAKQNDLPLKYQKMLKEIETNNFSGH..I-..---------------
  13 --VIVMGAEQNGLPEEYQEKLRSIETNKYEGRlpVM..EELEKALKK------
  14 --VVCLGAEQNGLPSEYLRKLKAIQTNNYSG-..--..---------------