# TARGET T0342 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-o_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 o_sep ) # The input amino acid frequencies were determined from # alignment T0342.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.37322 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 K 0.002 0.036 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.004 0.005 0.002 0.001 0.001 0.002 0.001 0.291 0.047 0.097 0.497 2 K 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.004 0.005 0.006 0.004 0.006 0.006 0.003 0.755 0.086 0.017 0.080 3 I 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.002 0.002 0.009 0.007 0.004 0.004 0.680 0.087 0.027 0.159 4 I 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.007 0.003 0.003 0.897 0.010 0.007 0.056 5 C 0.090 0.166 0.001 0.001 0.001 0.001 0.003 0.004 0.001 0.001 0.001 0.001 0.002 0.004 0.003 0.004 0.464 0.062 0.033 0.160 6 M 0.023 0.132 0.007 0.001 0.001 0.001 0.005 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.417 0.087 0.062 0.260 7 G 0.075 0.134 0.006 0.009 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.073 0.313 0.061 0.314 8 A 0.052 0.022 0.097 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.471 0.044 0.281 9 K 0.673 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.025 0.038 0.241 10 E 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.013 0.064 0.904 11 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.006 0.097 0.880 12 G 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.005 0.106 0.867 13 L 0.013 0.151 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.016 0.007 0.001 0.001 0.001 0.001 0.001 0.010 0.032 0.088 0.679 14 P 0.090 0.782 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.037 0.009 0.081 15 L 0.030 0.858 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.002 0.027 0.006 0.074 16 E 0.023 0.777 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.041 0.012 0.141 17 Y 0.024 0.834 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.030 0.008 0.087 18 Q 0.040 0.773 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.040 0.013 0.124 19 E 0.069 0.477 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.046 0.036 0.330 20 K 0.176 0.327 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.055 0.048 0.350 21 L 0.428 0.187 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.061 0.043 0.264 22 K 0.069 0.019 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.028 0.124 0.722 23 A 0.006 0.025 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.047 0.032 0.105 0.778 24 I 0.072 0.037 0.009 0.001 0.002 0.002 0.004 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.049 0.050 0.144 0.625 25 E 0.328 0.031 0.002 0.004 0.008 0.017 0.059 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.064 0.082 0.086 0.311 26 P 0.060 0.012 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.078 0.083 0.731 27 N 0.067 0.042 0.010 0.001 0.008 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.175 0.108 0.566 28 D 0.122 0.024 0.003 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.034 0.033 0.096 0.677 29 Y 0.080 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.036 0.022 0.092 0.747 30 T 0.017 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.036 0.045 0.109 0.769 31 G 0.004 0.049 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.074 0.057 0.111 0.680 32 K 0.018 0.135 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.001 0.061 0.001 0.005 0.001 0.002 0.001 0.036 0.029 0.089 0.602 33 V 0.017 0.315 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.002 0.001 0.003 0.001 0.001 0.038 0.018 0.054 0.547 34 S 0.035 0.873 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.006 0.059 35 E 0.013 0.882 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.039 0.006 0.053 36 E 0.007 0.896 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.022 0.005 0.067 37 I 0.012 0.923 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.032 0.003 0.027 38 E 0.011 0.895 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.020 0.006 0.062 39 D 0.030 0.760 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.036 0.018 0.146 40 I 0.081 0.204 0.198 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.329 0.042 0.138 41 I 0.268 0.036 0.008 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.099 0.100 0.475 42 K 0.057 0.004 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.091 0.071 0.760 43 K 0.002 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.052 0.079 0.844 44 G 0.061 0.015 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.117 0.123 0.665 45 E 0.033 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.049 0.060 0.078 0.767 46 T 0.022 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.034 0.016 0.060 0.863 47 Q 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.157 0.024 0.066 0.740 48 T 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.056 0.018 0.073 0.844 49 L 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.075 0.021 0.096 0.796