# TARGET T0342 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0342.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.37322 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 K 0.069 0.023 0.009 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.151 0.018 0.102 0.621 2 K 0.055 0.007 0.008 0.001 0.007 0.004 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.293 0.011 0.162 0.448 3 I 0.014 0.003 0.002 0.001 0.006 0.004 0.006 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.687 0.002 0.048 0.222 4 I 0.001 0.001 0.001 0.001 0.011 0.005 0.011 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.910 0.001 0.010 0.043 5 C 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.828 0.001 0.016 0.141 6 M 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.004 0.905 0.002 0.012 0.068 7 G 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.014 0.025 0.002 0.004 0.282 0.015 0.128 0.520 8 A 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.021 0.002 0.010 0.006 0.002 0.002 0.533 0.007 0.069 0.342 9 K 0.006 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.031 0.001 0.001 0.003 0.002 0.001 0.001 0.157 0.006 0.216 0.563 10 E 0.075 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.038 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.108 0.012 0.091 0.654 11 N 0.098 0.072 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.092 0.022 0.071 0.639 12 G 0.560 0.030 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.036 0.019 0.332 13 L 0.062 0.033 0.121 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.004 0.272 0.451 14 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 15 L 0.007 0.012 0.001 0.001 0.011 0.007 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.001 0.115 0.810 16 E 0.020 0.082 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.003 0.120 0.749 17 Y 0.119 0.277 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.009 0.101 0.476 18 Q 0.055 0.758 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.004 0.013 0.149 19 E 0.036 0.738 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.006 0.021 0.183 20 K 0.056 0.760 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.020 0.007 0.144 21 L 0.121 0.712 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.027 0.003 0.111 22 K 0.112 0.481 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.112 0.050 0.026 0.200 23 A 0.223 0.190 0.014 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.091 0.020 0.432 24 I 0.428 0.125 0.027 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.004 0.005 0.084 0.027 0.019 0.268 25 E 0.047 0.071 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.005 0.005 0.016 0.003 0.142 0.013 0.205 0.482 26 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.004 0.992 27 N 0.014 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.021 0.052 0.005 0.016 0.003 0.002 0.001 0.302 0.006 0.120 0.434 28 D 0.402 0.011 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.025 0.038 0.476 29 Y 0.148 0.056 0.005 0.001 0.001 0.001 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.058 0.008 0.200 0.505 30 T 0.129 0.041 0.004 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.053 0.021 0.184 0.560 31 G 0.084 0.080 0.032 0.004 0.004 0.006 0.003 0.002 0.003 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.073 0.014 0.105 0.583 32 K 0.143 0.026 0.030 0.002 0.006 0.004 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.006 0.223 0.511 33 V 0.051 0.045 0.002 0.006 0.003 0.007 0.004 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.104 0.004 0.083 0.686 34 S 0.037 0.048 0.005 0.001 0.013 0.009 0.045 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.076 0.003 0.140 0.603 35 E 0.027 0.065 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.004 0.050 0.830 36 E 0.016 0.183 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.013 0.219 0.559 37 I 0.035 0.316 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.013 0.372 0.256 38 E 0.008 0.933 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.048 39 D 0.003 0.925 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.061 40 I 0.013 0.921 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.002 0.056 41 I 0.011 0.950 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.028 42 K 0.016 0.926 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.003 0.036 43 K 0.049 0.818 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.038 0.002 0.089 44 G 0.330 0.379 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.100 0.006 0.170 45 E 0.068 0.066 0.627 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.008 0.026 0.196 46 T 0.013 0.054 0.014 0.023 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.004 0.043 0.799 47 Q 0.062 0.067 0.004 0.004 0.007 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.001 0.136 0.014 0.063 0.627 48 T 0.065 0.063 0.009 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.075 0.013 0.107 0.656 49 L 0.051 0.074 0.007 0.002 0.003 0.002 0.001 0.003 0.004 0.002 0.002 0.001 0.005 0.003 0.002 0.002 0.231 0.009 0.058 0.540